Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Reverse (-)

69536390 .. 69538961

Gene Structure 2572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG476400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGCGGCTTTATGGTCCTAACCATGATGCTCTCGAAGCTCTTAGAGGCTCCAACATTGAGCTCATGCTTGGTGTCGAAAACGAACGCCTTCGGGATATTTCTTCTAACCAAGCCAGTGCTGATGATTGGGTCCAAAAAAATGTTGTGACCTATGGAAATGTCAATTTCAAGTACATTGCGGTTGGAAATGAAATAGATGCTAAAGGGCAATTAGCACCATTTGTTGGCCCTGCCATGGAAAAAATTCACAATGCAATTTCGAGGGCTGGTCTTGCAAACAAAATTAAAGTCTCCACGGCCGTTCATCCTGTAATTCTCCAAGAATCCTACCCTCCATCAAAAGGATCATTCAGGCAGGATTACCGACCATTTCTTGATCCTATCATTGGTTTCCTAGTGGGAAATAAATCTCCATTGCTTCTAAATATGTACCCATACTTTAGTTTCATTCAAAACCGAGCAAACATTGACCTTCGATATGCTCTTTTTACATCTCCGTCAGTCGTGGTTCAAGATGGACAATCTGGCTATCAAAATCTGTTTGATGCAATTCTTGATGCACATTACTCCGCTTTAGAGAAGGCTGGGGGTGGTTCTTTGAGAATTGTTGTATCGGAGACTGGTTGGCCCTCTGCTGGTGGTGATCGTCAAGTGACAACAAAGGAAAATGCGAGAATTTACAACTCAAATGTGATCAAGCATGTCAAGGGCGGTACTCCAAAGAGACCTGGCGGTTCGATAGAAACCTACATATTTGCCATGTTCAATGAGAATCAAAAACCTGGAGACGAGACTGAGAAAAATTTCGGCCTCTTTTACCCAAGCAAAAATCCGGTTTATCCCATCAATTTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

285

Amino Acids

31.52

Weight (kDa)

8.55

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	1 - 284	4.3e-98	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	224
AciI	CCGC	5 cut(s)	4, 179, 570, 711, 732
AclWI	GGATC	2 cut(s)	352, 371
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	3 cut(s)	243, 675, 802
AfaI	GTAC	3 cut(s)	173, 431, 715
AfiI	CCNNNNNNNGG	5 cut(s)	224, 235, 341, 386, 635
AgsI	TTSAA	5 cut(s)	169, 452, 512, 766, 853
AjnI	CCWGG	2 cut(s)	727, 781
AluBI	AGCT	2 cut(s)	38, 61
AluI	AGCT	2 cut(s)	38, 61
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	5 cut(s)	295, 611, 718, 780, 785
AlwI	GGATC	2 cut(s)	352, 371
AoxI	GGCC	4 cut(s)	226, 297, 626, 808
ApoI	RAATTY	3 cut(s)	243, 675, 802
ArsI	GACNNNNNNTTYG	2 cut(s)	273, 305
Asp700I	GAANNNNTTC	3 cut(s)	87, 243, 803
AspS9I	GGNCC	4 cut(s)	14, 130, 227, 627
AsuHPI	GGTGA	1 cut(s)	653
AvaII	GGWCC	2 cut(s)	14, 130
BanII	GRGCYC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	63
BccI	CCATC	3 cut(s)	343, 509, 851
BceAI	ACGGC	2 cut(s)	284, 312
BciT130I	CCWGG	2 cut(s)	729, 783
BclI	TGATCA	1 cut(s)	693
BcoDI	GTCTC	5 cut(s)	295, 611, 718, 780, 785
BfaI	CTAG	1 cut(s)	395
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	2 cut(s)	729, 783
Bme18I	GGWCC	2 cut(s)	14, 130
BmgT120I	GGNCC	4 cut(s)	14, 130, 227, 627
BmiI	GGNNCC	2 cut(s)	49, 131
BmrFI	CCNGG	2 cut(s)	729, 783
BmsI	GCATC	4 cut(s)	16, 187, 535, 547
BpmI	CTGGAG	1 cut(s)	804
BsaI	GGTCTC	1 cut(s)	718
BsaJI	CCNNGG	2 cut(s)	234, 294
BsaWI	WCCGGW	1 cut(s)	832
Bsc4I	CCNNNNNNNGG	5 cut(s)	224, 235, 341, 386, 635
Bse1I	ACTGG	2 cut(s)	114, 625
Bse3DI	GCAATG	2 cut(s)	174, 413
BseBI	CCWGG	2 cut(s)	729, 783
BseDI	CCNNGG	2 cut(s)	234, 294
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	5 cut(s)	224, 235, 341, 386, 635
BseMI	GCAATG	2 cut(s)	174, 413
BseMII	CTCAG	1 cut(s)	786
BseNI	ACTGG	2 cut(s)	114, 625
BseX3I	CGGCCG	1 cut(s)	297
BseYI	CCCAGC	1 cut(s)	584
Bsh1285I	CGRYCG	1 cut(s)	300
BshFI	GGCC	4 cut(s)	228, 299, 628, 810
BsiEI	CGRYCG	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	833
BslI	CCNNNNNNNGG	5 cut(s)	224, 235, 341, 386, 635
BsmAI	GTCTC	5 cut(s)	295, 611, 718, 780, 785
BsmBI	CGTCTC	1 cut(s)	780
BsnI	GGCC	4 cut(s)	228, 299, 628, 810
Bso31I	GGTCTC	1 cut(s)	718
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	4 cut(s)	344, 376, 643, 693
Bsp19I	CCATGG	1 cut(s)	234
BspACI	CCGC	5 cut(s)	4, 179, 570, 711, 732
BspANI	GGCC	4 cut(s)	228, 299, 628, 810
BspCNI	CTCAG	1 cut(s)	787
BspLI	GGNNCC	2 cut(s)	49, 131
BspPI	GGATC	2 cut(s)	352, 371
BspTNI	GGTCTC	1 cut(s)	718
BsrDI	GCAATG	2 cut(s)	174, 413
BsrI	ACTGG	2 cut(s)	114, 625
BssECI	CCNNGG	2 cut(s)	234, 294
BssMI	GATC	4 cut(s)	344, 376, 643, 693
BssT1I	CCWWGG	1 cut(s)	234
Bst2UI	CCWGG	2 cut(s)	729, 783
BstDEI	CTNAG	2 cut(s)	41, 795
BstDSI	CCRYGG	2 cut(s)	234, 294
BstF5I	GGATG	1 cut(s)	304
BstKTI	GATC	4 cut(s)	347, 379, 646, 696
BstMAI	GTCTC	5 cut(s)	295, 611, 718, 780, 785
BstMBI	GATC	4 cut(s)	344, 376, 643, 693
BstMCI	CGRYCG	1 cut(s)	300
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 272
BstNI	CCWGG	2 cut(s)	729, 783
BstNSI	RCATGY	1 cut(s)	704
BstSCI	CCNGG	2 cut(s)	727, 781
BstZI	CGGCCG	1 cut(s)	297
BsuRI	GGCC	4 cut(s)	228, 299, 628, 810
BtgI	CCRYGG	2 cut(s)	234, 294
BtsCI	GGATG	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	121
Cfr13I	GGNCC	4 cut(s)	14, 130, 227, 627
Csp6I	GTAC	3 cut(s)	172, 430, 714
CviAII	CATG	5 cut(s)	23, 64, 235, 701, 760
CviQI	GTAC	3 cut(s)	172, 430, 714
DdeI	CTNAG	2 cut(s)	41, 795
DpnI	GATC	4 cut(s)	346, 378, 645, 695
DpnII	GATC	4 cut(s)	344, 376, 643, 693
EaeI	YGGCCR	1 cut(s)	297
EagI	CGGCCG	1 cut(s)	297
Ecl136II	GAGCTC	1 cut(s)	61
EclXI	CGGCCG	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	63
Eco31I	GGTCTC	1 cut(s)	718
Eco47I	GGWCC	2 cut(s)	14, 130
Eco52I	CGGCCG	1 cut(s)	297
Eco53kI	GAGCTC	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	61
EcoRII	CCWGG	2 cut(s)	727, 781
EcoT14I	CCWWGG	1 cut(s)	234
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	234
Esp3I	CGTCTC	1 cut(s)	780
FaeI	CATG	5 cut(s)	26, 67, 238, 704, 763
FatI	CATG	5 cut(s)	22, 63, 234, 700, 759
FbaI	TGATCA	1 cut(s)	693
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	1 cut(s)	291
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	1 cut(s)	395
GluI	GCNGC	1 cut(s)	5
GsaI	CCCAGC	1 cut(s)	588
GsuI	CTGGAG	1 cut(s)	804
HaeIII	GGCC	4 cut(s)	228, 299, 628, 810
HapII	CCGG	1 cut(s)	833
Hin1II	CATG	5 cut(s)	26, 67, 238, 704, 763
HinfI	GANTC	2 cut(s)	323, 772
HpaII	CCGG	1 cut(s)	833
HphI	GGTGA	1 cut(s)	653
Hpy188I	TCNGA	1 cut(s)	616
Hpy188III	TCNNGA	5 cut(s)	32, 92, 374, 512, 554
HpyAV	CCTTC	3 cut(s)	98, 482, 574
HpyCH4V	TGCA	4 cut(s)	254, 275, 548, 560
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 272
HpyF3I	CTNAG	2 cut(s)	41, 795
Hsp92II	CATG	5 cut(s)	26, 67, 238, 704, 763
Ksp22I	TGATCA	1 cut(s)	693
Kzo9I	GATC	4 cut(s)	344, 376, 643, 693
LmnI	GCTCC	1 cut(s)	53
LweI	GCATC	4 cut(s)	16, 187, 535, 547
MaeI	CTAG	1 cut(s)	395
MaeIII	GTNAC	2 cut(s)	145, 652
MalI	GATC	4 cut(s)	346, 378, 645, 695
MboI	GATC	4 cut(s)	344, 376, 643, 693
MboII	GAAGA	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	63
MmeI	TCCRAC	2 cut(s)	75, 163
MnlI	CCTC	5 cut(s)	38, 255, 342, 640, 821
MroXI	GAANNNNTTC	3 cut(s)	87, 243, 803
MseI	TTAA	1 cut(s)	285
MspI	CCGG	1 cut(s)	833
MspR9I	CCNGG	2 cut(s)	729, 783
MvaI	CCWGG	2 cut(s)	729, 783
MwoI	GCNNNNNNNGC	2 cut(s)	35, 272
NcoI	CCATGG	1 cut(s)	234
NdeII	GATC	4 cut(s)	344, 376, 643, 693
NlaIII	CATG	5 cut(s)	26, 67, 238, 704, 763
NlaIV	GGNNCC	2 cut(s)	49, 131
NmuCI	GTSAC	2 cut(s)	145, 652
NspI	RCATGY	1 cut(s)	704
PdmI	GAANNNNTTC	3 cut(s)	87, 243, 803
PfeI	GAWTC	2 cut(s)	323, 772
PflMI	CCANNNNNTGG	1 cut(s)	224
PkrI	GCNGC	1 cut(s)	6
Psp124BI	GAGCTC	1 cut(s)	63
Psp6I	CCWGG	2 cut(s)	727, 781
PspFI	CCCAGC	1 cut(s)	584
PspGI	CCWGG	2 cut(s)	727, 781
PspN4I	GGNNCC	2 cut(s)	49, 131
PspPI	GGNCC	4 cut(s)	14, 130, 227, 627
RsaI	GTAC	3 cut(s)	173, 431, 715
RsaNI	GTAC	3 cut(s)	172, 430, 714
SacI	GAGCTC	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	4 cut(s)	344, 376, 643, 693
Sau96I	GGNCC	4 cut(s)	14, 130, 227, 627
ScrFI	CCNGG	2 cut(s)	729, 783
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	7 cut(s)	40, 63, 152, 474, 730, 749, 784
SfaNI	GCATC	4 cut(s)	16, 187, 535, 547
SinI	GGWCC	2 cut(s)	14, 130
SsiI	CCGC	5 cut(s)	4, 179, 570, 711, 732
SspMI	CTAG	1 cut(s)	395
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	727, 781
StyI	CCWWGG	1 cut(s)	234
TaqI	TCGA	5 cut(s)	33, 75, 260, 475, 737
TatI	WGTACW	1 cut(s)	171
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	323, 772
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	2 cut(s)	145, 652
Tsp45I	GTSAC	2 cut(s)	145, 652
TspDTI	ATGAA	3 cut(s)	204, 293, 436
TspGWI	ACGGA	1 cut(s)	486
TspRI	CASTG	1 cut(s)	121
Van91I	CCANNNNNTGG	1 cut(s)	224
VpaK11BI	GGWCC	2 cut(s)	14, 130
XapI	RAATTY	3 cut(s)	243, 675, 802
XceI	RCATGY	1 cut(s)	704
XmnI	GAANNNNTTC	3 cut(s)	87, 243, 803
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.