Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Forward (+)

18814160 .. 18815373

Gene Structure 1214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00097590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGCACAAGATGGCTAAGTCCCATGTAGTTGCCAAAGTCCCTTTTGTAGTTTCCAAGTTACTAGTACTATTGGGTATCCTCATGGCTACCTTTACCACAACAGGTGCCCAGGTTGGTGTTTGTTATGGAACTGTCGCAAACAACTTGCCACCCCCACGAGAAGTAATATCACTTTACAACCAATATAAAATCAAAAGGATGCGGCTTTATGGTCCTAACCATGATGCTCTCGAAGCTCTTAGAGGCTCCAACATTGAGCTCATGCTTGATGCTAAAGGGCCATTAGCACCTTTTGTTGGCCCTGCCATGGAAAAAATTCACAATGCAATTTCGAGGGCTGGTCTTGCAAGCAAAATTAAAGTCTCCACGGCCGTTCATCCTGTAATTCTCCAAGAATCCTACCCTCCATCAAAAGGATCATTCAGGCAGGATTACAGACCATTTCTTGATCCTATCATTGGTTTCCTAGTGGGAAATAAATCTCCATTGCTTCTAAATATGTACCCATACTTTAGTTTCATTCAAAACCGAGCAAACATTGACCTTCGATATGCTCTTTTTACATCTCCGTCAGTCGTGGTTCAAGATGGACAATCTGGCTATCAAAATCTGTTTGATGCAATTCTTGATGCACATTACTCCGCTTTAGAGAAGGCTGGGGGTGGTTCTTTGAGAATTGTTGTATCGGAGACTGGTTGGCCCTCTGCTGGTGGTGATGGTCAAGTGACAACAAAGGAGAATGCGAGAATTTACAACTCAAATGTGATCAAGCATGTCAAGGGCGGTACTCCAAAGAGACGTGGAGGTTCGATAGAAACTTACATATTTGCCGTGTTCAATGAGAATCAAAAACGTGGAGACGAGACTGAGAAAAATTTCGGCCTCTTTTACCCAAGCAAAAATCCGGTTTTTCCCATCAATTTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

309

Amino Acids

33.97

Weight (kDa)

9.63

Isoelectric Point (pI)

48.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	38 - 91	1.2e-12	Glycosyl hydrolases family 17
Glyco_hydro_17	PF00332	97 - 308	2.6e-74	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	104
AciI	CCGC	3 cut(s)	202, 642, 783
AclWI	GGATC	2 cut(s)	424, 443
AcoI	YGGCCR	1 cut(s)	369
AcsI	RAATTY	3 cut(s)	315, 747, 874
AfaI	GTAC	3 cut(s)	66, 503, 787
AfiI	CCNNNNNNNGG	5 cut(s)	296, 307, 413, 458, 707
AgsI	TTSAA	4 cut(s)	524, 584, 838, 925
AhlI	ACTAGT	1 cut(s)	61
AjiI	CACGTC	1 cut(s)	800
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	2 cut(s)	236, 259
AluI	AGCT	2 cut(s)	236, 259
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	5 cut(s)	367, 683, 790, 852, 857
AlwI	GGATC	2 cut(s)	424, 443
AoxI	GGCC	5 cut(s)	278, 298, 369, 698, 880
ApoI	RAATTY	3 cut(s)	315, 747, 874
ArsI	GACNNNNNNTTYG	2 cut(s)	345, 377
Asp700I	GAANNNNTTC	2 cut(s)	315, 875
AspS9I	GGNCC	4 cut(s)	212, 278, 299, 699
AsuHPI	GGTGA	1 cut(s)	725
AvaII	GGWCC	1 cut(s)	212
BaeGI	GKGCMC	1 cut(s)	109
BanI	GGYRCC	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	261
BauI	CACGAG	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	261
BccI	CCATC	5 cut(s)	4, 415, 581, 710, 923
BceAI	ACGGC	3 cut(s)	356, 384, 815
BciT130I	CCWGG	1 cut(s)	110
BciVI	GTATCC	1 cut(s)	86
BclI	TGATCA	1 cut(s)	765
BcoDI	GTCTC	5 cut(s)	367, 683, 790, 852, 857
BcuI	ACTAGT	1 cut(s)	61
BfaI	CTAG	2 cut(s)	62, 467
BfuI	GTATCC	1 cut(s)	86
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
BmcAI	AGTACT	1 cut(s)	66
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	212
BmgBI	CACGTC	1 cut(s)	800
BmgT120I	GGNCC	4 cut(s)	212, 278, 299, 699
BmiI	GGNNCC	2 cut(s)	106, 247
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	5 cut(s)	189, 214, 259, 607, 619
BsaJI	CCNNGG	3 cut(s)	108, 306, 366
BsaWI	WCCGGW	1 cut(s)	904
Bsc4I	CCNNNNNNNGG	5 cut(s)	296, 307, 413, 458, 707
Bse1I	ACTGG	1 cut(s)	697
Bse3DI	GCAATG	1 cut(s)	485
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	3 cut(s)	108, 306, 366
BseGI	GGATG	2 cut(s)	204, 376
BseLI	CCNNNNNNNGG	5 cut(s)	296, 307, 413, 458, 707
BseMI	GCAATG	1 cut(s)	485
BseMII	CTCAG	1 cut(s)	858
BseNI	ACTGG	1 cut(s)	697
BseSI	GKGCMC	1 cut(s)	109
BseX3I	CGGCCG	1 cut(s)	369
BseYI	CCCAGC	1 cut(s)	656
Bsh1285I	CGRYCG	1 cut(s)	372
BshFI	GGCC	5 cut(s)	280, 300, 371, 700, 882
BshNI	GGYRCC	1 cut(s)	104
BsiEI	CGRYCG	1 cut(s)	372
BsiHKAI	GWGCWC	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	905
BslFI	GGGAC	2 cut(s)	4, 23
BslI	CCNNNNNNNGG	5 cut(s)	296, 307, 413, 458, 707
BsmAI	GTCTC	5 cut(s)	367, 683, 790, 852, 857
BsmBI	CGTCTC	2 cut(s)	790, 852
BsmFI	GGGAC	2 cut(s)	4, 23
BsmI	GAATGC	1 cut(s)	745
BsnI	GGCC	5 cut(s)	280, 300, 371, 700, 882
Bsp1286I	GDGCHC	2 cut(s)	109, 261
Bsp143I	GATC	3 cut(s)	416, 448, 765
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	3 cut(s)	202, 642, 783
BspANI	GGCC	5 cut(s)	280, 300, 371, 700, 882
BspCNI	CTCAG	1 cut(s)	859
BspLI	GGNNCC	2 cut(s)	106, 247
BspPI	GGATC	2 cut(s)	424, 443
BspT107I	GGYRCC	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	485
BsrI	ACTGG	1 cut(s)	697
BssECI	CCNNGG	3 cut(s)	108, 306, 366
BssMI	GATC	3 cut(s)	416, 448, 765
BssSI	CACGAG	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	3 cut(s)	15, 239, 867
BstDSI	CCRYGG	2 cut(s)	306, 366
BstF5I	GGATG	2 cut(s)	204, 376
BstKTI	GATC	3 cut(s)	419, 451, 768
BstMAI	GTCTC	5 cut(s)	367, 683, 790, 852, 857
BstMBI	GATC	3 cut(s)	416, 448, 765
BstMCI	CGRYCG	1 cut(s)	372
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 344
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	776
BstSCI	CCNGG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	109
BstZI	CGGCCG	1 cut(s)	369
BsuI	GTATCC	1 cut(s)	86
BsuRI	GGCC	5 cut(s)	280, 300, 371, 700, 882
BtgI	CCRYGG	2 cut(s)	306, 366
BtrI	CACGTC	1 cut(s)	800
BtsCI	GGATG	2 cut(s)	204, 376
Cac8I	GCNNGC	1 cut(s)	349
Cfr13I	GGNCC	4 cut(s)	212, 278, 299, 699
Csp6I	GTAC	3 cut(s)	65, 502, 786
CviAII	CATG	6 cut(s)	23, 82, 221, 262, 307, 773
CviQI	GTAC	3 cut(s)	65, 502, 786
DdeI	CTNAG	3 cut(s)	15, 239, 867
DpnI	GATC	3 cut(s)	418, 450, 767
DpnII	GATC	3 cut(s)	416, 448, 765
EaeI	YGGCCR	1 cut(s)	369
EagI	CGGCCG	1 cut(s)	369
Ecl136II	GAGCTC	1 cut(s)	259
EclXI	CGGCCG	1 cut(s)	369
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	212
Eco52I	CGGCCG	1 cut(s)	369
Eco53kI	GAGCTC	1 cut(s)	259
EcoICRI	GAGCTC	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	306
Esp3I	CGTCTC	2 cut(s)	790, 852
FaeI	CATG	6 cut(s)	26, 85, 224, 265, 310, 776
FaqI	GGGAC	2 cut(s)	4, 23
FatI	CATG	6 cut(s)	22, 81, 220, 261, 306, 772
FbaI	TGATCA	1 cut(s)	765
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	2 cut(s)	211, 363
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	1 cut(s)	203
FspBI	CTAG	2 cut(s)	62, 467
GluI	GCNGC	1 cut(s)	203
GsaI	CCCAGC	1 cut(s)	660
HaeIII	GGCC	5 cut(s)	280, 300, 371, 700, 882
HapII	CCGG	1 cut(s)	905
Hin1II	CATG	6 cut(s)	26, 85, 224, 265, 310, 776
HinfI	GANTC	2 cut(s)	395, 844
HpaII	CCGG	1 cut(s)	905
HphI	GGTGA	1 cut(s)	725
Hpy188I	TCNGA	1 cut(s)	688
Hpy188III	TCNNGA	4 cut(s)	230, 446, 584, 626
HpyAV	CCTTC	2 cut(s)	554, 646
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4IV	ACGT	2 cut(s)	799, 853
HpyCH4V	TGCA	5 cut(s)	4, 326, 347, 620, 632
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 344
HpyF3I	CTNAG	3 cut(s)	15, 239, 867
HpySE526I	ACGT	2 cut(s)	799, 853
Hsp92II	CATG	6 cut(s)	26, 85, 224, 265, 310, 776
Ksp22I	TGATCA	1 cut(s)	765
Kzo9I	GATC	3 cut(s)	416, 448, 765
LmnI	GCTCC	1 cut(s)	251
LweI	GCATC	5 cut(s)	189, 214, 259, 607, 619
MaeI	CTAG	2 cut(s)	62, 467
MaeII	ACGT	2 cut(s)	799, 853
MaeIII	GTNAC	2 cut(s)	57, 724
MalI	GATC	3 cut(s)	418, 450, 767
MboI	GATC	3 cut(s)	416, 448, 765
MhlI	GDGCHC	2 cut(s)	109, 261
MluCI	AATT	9 cut(s)	315, 327, 354, 384, 621, 675, 747, 874, 919
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	7 cut(s)	89, 236, 327, 414, 712, 797, 893
MroXI	GAANNNNTTC	2 cut(s)	315, 875
MseI	TTAA	1 cut(s)	357
MspI	CCGG	1 cut(s)	905
MspR9I	CCNGG	1 cut(s)	110
Mva1269I	GAATGC	1 cut(s)	745
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	2 cut(s)	233, 344
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	3 cut(s)	416, 448, 765
NlaIII	CATG	6 cut(s)	26, 85, 224, 265, 310, 776
NlaIV	GGNNCC	2 cut(s)	106, 247
NmuCI	GTSAC	1 cut(s)	724
NspI	RCATGY	1 cut(s)	776
PctI	GAATGC	1 cut(s)	745
PdmI	GAANNNNTTC	2 cut(s)	315, 875
PfeI	GAWTC	2 cut(s)	395, 844
PkrI	GCNGC	1 cut(s)	204
Psp124BI	GAGCTC	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	108
PspFI	CCCAGC	1 cut(s)	656
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	2 cut(s)	106, 247
PspPI	GGNCC	4 cut(s)	212, 278, 299, 699
RsaI	GTAC	3 cut(s)	66, 503, 787
RsaNI	GTAC	3 cut(s)	65, 502, 786
SacI	GAGCTC	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	3 cut(s)	416, 448, 765
Sau96I	GGNCC	4 cut(s)	212, 278, 299, 699
ScaI	AGTACT	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	2 cut(s)	109, 261
SfaNI	GCATC	5 cut(s)	189, 214, 259, 607, 619
SinI	GGWCC	1 cut(s)	212
SpeI	ACTAGT	1 cut(s)	61
Sse9I	AATT	9 cut(s)	315, 327, 354, 384, 621, 675, 747, 874, 919
SsiI	CCGC	3 cut(s)	202, 642, 783
SspMI	CTAG	2 cut(s)	62, 467
SstI	GAGCTC	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	133
TaiI	ACGT	2 cut(s)	802, 856
TaqI	TCGA	4 cut(s)	231, 332, 547, 809
TasI	AATT	9 cut(s)	315, 327, 354, 384, 621, 675, 747, 874, 919
TatI	WGTACW	1 cut(s)	64
TauI	GCSGC	1 cut(s)	205
TfiI	GAWTC	2 cut(s)	395, 844
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TseFI	GTSAC	1 cut(s)	724
Tsp45I	GTSAC	1 cut(s)	724
TspDTI	ATGAA	2 cut(s)	365, 508
TspGWI	ACGGA	1 cut(s)	558
VpaK11BI	GGWCC	1 cut(s)	212
XapI	RAATTY	3 cut(s)	315, 747, 874
XceI	RCATGY	1 cut(s)	776
XmnI	GAANNNNTTC	2 cut(s)	315, 875
XspI	CTAG	2 cut(s)	62, 467
ZrmI	AGTACT	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.