Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Forward (+)

30439873 .. 30440840

Gene Structure 968 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44879

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGCAGGTTCCAAGATTAATTGGTGTTTGTTATGGAACCTTGGGAAACGACTTACTGCCAGCACAGGAAGTAATATCTATGTTCGACCAGCATAGAATTCAGAAAATCCGTCTCTATGATCCTAACCAAGGAGCTCTCCAAGCCCTTAGAGGCTCCAACATCGAAGTCATGCTTGGTGTTGAAAATGAACGCCTTCAAGACCAAGACAAGGCTAATTCCTGGGTCCAAAGTAATGTCATAAACTATGGCAATGTCAATTTCAAATACATTGTAGTTGGAAACGAAATAGATCCTACAGGTCCACAAGCATCATTTGTTGGCCCTGCAATGGAAAACATTCAAAAAGCAATTACTTCGGAGAATCTTGCCAGTAAAATCAAAGTCTCCACTGCCATTTCCACTGCCGTCCTCAAAGAACCCTCCTACCCTCCATCAAACGGATCATTCCGTATTGACCATTTACCATTTCTTAATCCCATAATCGCCTTCTTAGCACGCAACCAATCTCCACTGCTCGTTAATCTATACCCTTATTTTACTTACAATCAAAACAGTCAGATTAATATCGAGTATGCTCTTTTTACATCTCCATCACCTGTAGTGCATGATGGCCAGCTTGGCGGTTCCTTGGGAATCGTTGTATCGGAGTCTGGTTGGCCCTCTTCCGGTGGGGATGGAGAAGTGACTACAACTGAGAATGCAATAATTTACAACTCCAATTTGATCAATCATGTGAAGGCTAATGGGACTCCAAAGAAACCTGGAAGCACTATAGAGGCTTATGTGTTTGCCATGTTTAATGAGAATCAAAAGAAAGGTCCACAGACTGAGAGACATTGGGGGCTCTTCTACCCAACCAAACAGCCTAAATATCTCACATCGATTTCAATTAAGCCAAAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

301

Amino Acids

33.21

Weight (kDa)

6.97

Isoelectric Point (pI)

41.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	7 - 291	5.5e-82	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	621
AclWI	GGATC	3 cut(s)	113, 284, 448
AcoI	YGGCCR	1 cut(s)	610
AcsI	RAATTY	2 cut(s)	96, 899
AfiI	CCNNNNNNNGG	5 cut(s)	128, 208, 328, 437, 665
AgsI	TTSAA	5 cut(s)	182, 197, 262, 341, 888
AjnI	CCWGG	2 cut(s)	218, 760
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AluBI	AGCT	2 cut(s)	134, 616
AluI	AGCT	2 cut(s)	134, 616
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	3 cut(s)	116, 388, 826
AlwI	GGATC	3 cut(s)	113, 284, 448
AoxI	GGCC	3 cut(s)	319, 610, 656
ApoI	RAATTY	2 cut(s)	96, 899
ArsI	GACNNNNNNTTYG	2 cut(s)	802, 834
AseI	ATTAAT	2 cut(s)	17, 561
Asp700I	GAANNNNTTC	2 cut(s)	192, 336
AspS9I	GGNCC	5 cut(s)	223, 299, 320, 657, 818
AsuHPI	GGTGA	1 cut(s)	585
AvaII	GGWCC	3 cut(s)	223, 299, 818
BalI	TGGCCA	1 cut(s)	612
BanII	GRGCYC	2 cut(s)	136, 846
Bbv12I	GWGCWC	1 cut(s)	136
BccI	CCATC	4 cut(s)	439, 598, 602, 668
BceAI	ACGGC	1 cut(s)	389
BcgI	CGANNNNNNTGC	2 cut(s)	336, 370
BciT130I	CCWGG	2 cut(s)	220, 762
BclI	TGATCA	1 cut(s)	723
BcoDI	GTCTC	3 cut(s)	116, 388, 826
BfaI	CTAG	1 cut(s)	904
BfmI	CTRYAG	3 cut(s)	294, 597, 771
BglI	GCCNNNNNGGC	1 cut(s)	618
Bme1390I	CCNGG	2 cut(s)	220, 762
Bme18I	GGWCC	3 cut(s)	223, 299, 818
BmgT120I	GGNCC	5 cut(s)	223, 299, 320, 657, 818
BmiI	GGNNCC	5 cut(s)	9, 37, 154, 224, 625
BmrFI	CCNGG	2 cut(s)	220, 762
BmsI	GCATC	1 cut(s)	317
Bsa29I	ATCGAT	1 cut(s)	881
BsaBI	GATNNNNATC	1 cut(s)	563
BsaJI	CCNNGG	4 cut(s)	39, 127, 219, 627
BsaWI	WCCGGW	1 cut(s)	665
Bsc4I	CCNNNNNNNGG	5 cut(s)	128, 208, 328, 437, 665
Bse1I	ACTGG	1 cut(s)	369
Bse3DI	GCAATG	2 cut(s)	256, 333
Bse8I	GATNNNNATC	1 cut(s)	563
BseBI	CCWGG	2 cut(s)	220, 762
BseCI	ATCGAT	1 cut(s)	881
BseDI	CCNNGG	4 cut(s)	39, 127, 219, 627
BseGI	GGATG	1 cut(s)	679
BseJI	GATNNNNATC	1 cut(s)	563
BseLI	CCNNNNNNNGG	5 cut(s)	128, 208, 328, 437, 665
BseMI	GCAATG	2 cut(s)	256, 333
BseMII	CTCAG	2 cut(s)	684, 819
BseNI	ACTGG	1 cut(s)	369
BshFI	GGCC	3 cut(s)	321, 612, 658
BshVI	ATCGAT	1 cut(s)	881
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	666
BslFI	GGGAC	1 cut(s)	760
BslI	CCNNNNNNNGG	5 cut(s)	128, 208, 328, 437, 665
BsmAI	GTCTC	3 cut(s)	116, 388, 826
BsmBI	CGTCTC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	760
BsmI	GAATGC	1 cut(s)	703
BsnI	GGCC	3 cut(s)	321, 612, 658
Bsp1286I	GDGCHC	2 cut(s)	136, 846
Bsp143I	GATC	4 cut(s)	118, 289, 440, 723
BspACI	CCGC	1 cut(s)	621
BspANI	GGCC	3 cut(s)	321, 612, 658
BspCNI	CTCAG	2 cut(s)	685, 820
BspDI	ATCGAT	1 cut(s)	881
BspLI	GGNNCC	5 cut(s)	9, 37, 154, 224, 625
BspPI	GGATC	3 cut(s)	113, 284, 448
BspQI	GCTCTTC	1 cut(s)	851
BsrDI	GCAATG	2 cut(s)	256, 333
BsrI	ACTGG	1 cut(s)	369
BssECI	CCNNGG	4 cut(s)	39, 127, 219, 627
BssMI	GATC	4 cut(s)	118, 289, 440, 723
BssT1I	CCWWGG	3 cut(s)	39, 127, 627
Bst2UI	CCWGG	2 cut(s)	220, 762
Bst4CI	ACNGT	1 cut(s)	554
Bst6I	CTCTTC	2 cut(s)	667, 851
BstC8I	GCNNGC	3 cut(s)	60, 496, 614
BstDEI	CTNAG	4 cut(s)	146, 490, 693, 828
BstENI	CCTNNNNNAGG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	679
BstKTI	GATC	4 cut(s)	121, 292, 443, 726
BstMAI	GTCTC	3 cut(s)	116, 388, 826
BstMBI	GATC	4 cut(s)	118, 289, 440, 723
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 491, 618
BstNI	CCWGG	2 cut(s)	220, 762
BstSCI	CCNGG	2 cut(s)	218, 760
BstSFI	CTRYAG	3 cut(s)	294, 597, 771
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
Bsu15I	ATCGAT	1 cut(s)	881
BsuRI	GGCC	3 cut(s)	321, 612, 658
BsuTUI	ATCGAT	1 cut(s)	881
BtsCI	GGATG	1 cut(s)	679
BtsI	GCAGTG	3 cut(s)	387, 399, 509
BtsIMutI	CAGTG	3 cut(s)	387, 399, 509
Cac8I	GCNNGC	3 cut(s)	60, 496, 614
Cfr13I	GGNCC	5 cut(s)	223, 299, 320, 657, 818
ClaI	ATCGAT	1 cut(s)	881
CviAII	CATG	4 cut(s)	169, 605, 731, 793
DdeI	CTNAG	4 cut(s)	146, 490, 693, 828
DpnI	GATC	4 cut(s)	120, 291, 442, 725
DpnII	GATC	4 cut(s)	118, 289, 440, 723
EaeI	YGGCCR	1 cut(s)	610
Eam1104I	CTCTTC	2 cut(s)	667, 851
EarI	CTCTTC	2 cut(s)	667, 851
Ecl136II	GAGCTC	1 cut(s)	134
Eco130I	CCWWGG	3 cut(s)	39, 127, 627
Eco24I	GRGCYC	2 cut(s)	136, 846
Eco47I	GGWCC	3 cut(s)	223, 299, 818
Eco53kI	GAGCTC	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	134
EcoNI	CCTNNNNNAGG	1 cut(s)	126
EcoRI	GAATTC	1 cut(s)	96
EcoRII	CCWGG	2 cut(s)	218, 760
EcoT14I	CCWWGG	3 cut(s)	39, 127, 627
EcoT38I	GRGCYC	2 cut(s)	136, 846
ErhI	CCWWGG	3 cut(s)	39, 127, 627
Esp3I	CGTCTC	1 cut(s)	116
FaeI	CATG	4 cut(s)	172, 608, 734, 796
FalI	AAGNNNNNCTT	2 cut(s)	156, 188
FaqI	GGGAC	1 cut(s)	760
FatI	CATG	4 cut(s)	168, 604, 730, 792
FbaI	TGATCA	1 cut(s)	723
FokI	GGATG	1 cut(s)	686
FriOI	GRGCYC	2 cut(s)	136, 846
FspBI	CTAG	1 cut(s)	904
HaeIII	GGCC	3 cut(s)	321, 612, 658
HapII	CCGG	1 cut(s)	666
Hin1II	CATG	4 cut(s)	172, 608, 734, 796
HinfI	GANTC	5 cut(s)	361, 633, 647, 748, 805
HpaII	CCGG	1 cut(s)	666
HphI	GGTGA	1 cut(s)	585
Hpy166II	GTNNAC	2 cut(s)	302, 821
Hpy188I	TCNGA	4 cut(s)	102, 358, 558, 646
Hpy188III	TCNNGA	1 cut(s)	197
Hpy8I	GTNNAC	2 cut(s)	302, 821
HpyAV	CCTTC	3 cut(s)	203, 496, 730
HpyCH4III	ACNGT	1 cut(s)	554
HpyCH4V	TGCA	4 cut(s)	4, 326, 604, 701
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 491, 618
HpyF3I	CTNAG	4 cut(s)	146, 490, 693, 828
Hsp92II	CATG	4 cut(s)	172, 608, 734, 796
Ksp22I	TGATCA	1 cut(s)	723
Kzo9I	GATC	4 cut(s)	118, 289, 440, 723
LguI	GCTCTTC	1 cut(s)	851
LmnI	GCTCC	2 cut(s)	131, 158
LweI	GCATC	1 cut(s)	317
MaeI	CTAG	1 cut(s)	904
MaeIII	GTNAC	1 cut(s)	682
MalI	GATC	4 cut(s)	120, 291, 442, 725
MboI	GATC	4 cut(s)	118, 289, 440, 723
MboII	GAAGA	2 cut(s)	654, 838
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	2 cut(s)	136, 846
MlsI	TGGCCA	1 cut(s)	612
MluCI	AATT	9 cut(s)	18, 96, 214, 256, 348, 705, 718, 888, 899
MluNI	TGGCCA	1 cut(s)	612
MlyI	GAGTC	2 cut(s)	656, 742
MmeI	TCCRAC	2 cut(s)	180, 256
MnlI	CCTC	6 cut(s)	143, 419, 430, 438, 670, 769
Mox20I	TGGCCA	1 cut(s)	612
MroXI	GAANNNNTTC	2 cut(s)	192, 336
MscI	TGGCCA	1 cut(s)	612
MseI	TTAA	6 cut(s)	17, 471, 519, 561, 798, 891
Msp20I	TGGCCA	1 cut(s)	612
MspI	CCGG	1 cut(s)	666
MspR9I	CCNGG	2 cut(s)	220, 762
Mva1269I	GAATGC	1 cut(s)	703
MvaI	CCWGG	2 cut(s)	220, 762
MwoI	GCNNNNNNNGC	3 cut(s)	140, 491, 618
NdeII	GATC	4 cut(s)	118, 289, 440, 723
NlaIII	CATG	4 cut(s)	172, 608, 734, 796
NlaIV	GGNNCC	5 cut(s)	9, 37, 154, 224, 625
NmuCI	GTSAC	1 cut(s)	682
PciSI	GCTCTTC	1 cut(s)	851
PctI	GAATGC	1 cut(s)	703
PdmI	GAANNNNTTC	2 cut(s)	192, 336
PfeI	GAWTC	3 cut(s)	361, 633, 805
PleI	GAGTC	2 cut(s)	655, 742
PpsI	GAGTC	2 cut(s)	655, 742
PshBI	ATTAAT	2 cut(s)	17, 561
Psp124BI	GAGCTC	1 cut(s)	136
Psp6I	CCWGG	2 cut(s)	218, 760
PspGI	CCWGG	2 cut(s)	218, 760
PspN4I	GGNNCC	5 cut(s)	9, 37, 154, 224, 625
PspPI	GGNCC	5 cut(s)	223, 299, 320, 657, 818
PsuI	RGATCY	1 cut(s)	289
SacI	GAGCTC	1 cut(s)	136
SapI	GCTCTTC	1 cut(s)	851
SaqAI	TTAA	6 cut(s)	17, 471, 519, 561, 798, 891
Sau3AI	GATC	4 cut(s)	118, 289, 440, 723
Sau96I	GGNCC	5 cut(s)	223, 299, 320, 657, 818
SchI	GAGTC	2 cut(s)	656, 742
ScrFI	CCNGG	2 cut(s)	220, 762
SduI	GDGCHC	2 cut(s)	136, 846
SetI	ASST	8 cut(s)	9, 41, 136, 301, 598, 618, 763, 820
SfaNI	GCATC	1 cut(s)	317
SfcI	CTRYAG	3 cut(s)	294, 597, 771
SinI	GGWCC	3 cut(s)	223, 299, 818
Sse9I	AATT	9 cut(s)	18, 96, 214, 256, 348, 705, 718, 888, 899
SsiI	CCGC	1 cut(s)	621
SspMI	CTAG	1 cut(s)	904
SstI	GAGCTC	1 cut(s)	136
StyD4I	CCNGG	2 cut(s)	218, 760
StyI	CCWWGG	3 cut(s)	39, 127, 627
TaaI	ACNGT	1 cut(s)	554
TaqI	TCGA	4 cut(s)	84, 162, 567, 881
TasI	AATT	9 cut(s)	18, 96, 214, 256, 348, 705, 718, 888, 899
TfiI	GAWTC	3 cut(s)	361, 633, 805
Tru1I	TTAA	6 cut(s)	17, 471, 519, 561, 798, 891
Tru9I	TTAA	6 cut(s)	17, 471, 519, 561, 798, 891
TscAI	CASTG	3 cut(s)	394, 406, 516
TseFI	GTSAC	1 cut(s)	682
Tsp45I	GTSAC	1 cut(s)	682
TspDTI	ATGAA	1 cut(s)	201
TspGWI	ACGGA	3 cut(s)	98, 437, 453
TspRI	CASTG	3 cut(s)	394, 406, 516
VpaK11BI	GGWCC	3 cut(s)	223, 299, 818
VspI	ATTAAT	2 cut(s)	17, 561
XagI	CCTNNNNNAGG	1 cut(s)	126
XapI	RAATTY	2 cut(s)	96, 899
XmnI	GAANNNNTTC	2 cut(s)	192, 336
XspI	CTAG	1 cut(s)	904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.