Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Forward (+)

20396335 .. 20399367

Gene Structure 3033 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023240

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCTTTTCTCGATTGCTAATGTACTTGTATCTGATGCAGGTGCCCAATTTGGTGTTTGTTATGGAACTGTAGCAAACAATCTACCAGAACCACGACAAGTAATATCACTTTACAACCAACATAGCATCATAAGGATGCGGCTATATGGTCCTAACCATGACGCTCTCGAAGCTCTTAGAGGCTCTAACATCGAGCTCGTGCTTGGGGCTGAACACGAACGCCTTCAGGACATATCTTCTAACCAAGCTAGTGCTGATGATTGGGTCCAAAACAATGTTGTAACCTATGGAGATGTCAATTTCAAATACATTGCAGTTGGGAATGAAATAGAATCAGATCCATTTGCACAATTTGTTGGCCCTGCCATGGAAAAAATTCAAAATGCAATTTCTAAGGCCGGTCTTGCAAACAAAATTAAAGTCTCGCCAGCAGTTCATCCTATAGTCCTCCAAGAATCCTTCCCTCCATCAAAAGGATCATTCAAGCAGGATTATCGAGCCTTTCCTGATCCTGTCATTGGTTTCCTTGTGGGAAACCAATCTCCGTCACTTTCTGAAACTGTAAAAGTTCATGTTGATCTAAAAGGCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

198

Amino Acids

21.42

Weight (kDa)

5.48

Isoelectric Point (pI)

32.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	18 - 185	3.9e-46	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	29
Acc36I	ACCTGC	1 cut(s)	29
AccB1I	GGYRCC	1 cut(s)	41
AciI	CCGC	1 cut(s)	139
AclWI	GGATC	3 cut(s)	332, 484, 503
AcsI	RAATTY	1 cut(s)	375
AcuI	CTGAAG	1 cut(s)	209
AfaI	GTAC	1 cut(s)	24
AfiI	CCNNNNNNNGG	3 cut(s)	367, 473, 518
AgsI	TTSAA	3 cut(s)	304, 380, 484
AluBI	AGCT	3 cut(s)	173, 196, 248
AluI	AGCT	3 cut(s)	173, 196, 248
Alw21I	GWGCWC	1 cut(s)	198
Alw26I	GTCTC	1 cut(s)	427
AlwI	GGATC	3 cut(s)	332, 484, 503
AoxI	GGCC	2 cut(s)	358, 396
ApoI	RAATTY	1 cut(s)	375
ArsI	GACNNNNNNTTYG	2 cut(s)	405, 437
Asp700I	GAANNNNTTC	2 cut(s)	222, 375
AspS9I	GGNCC	3 cut(s)	149, 265, 359
AvaII	GGWCC	2 cut(s)	149, 265
BaeGI	GKGCMC	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	198
BauI	CACGAG	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	198
BccI	CCATC	1 cut(s)	475
BcgI	CGANNNNNNTGC	2 cut(s)	476, 510
BcoDI	GTCTC	1 cut(s)	427
BfaI	CTAG	1 cut(s)	249
BfmI	CTRYAG	2 cut(s)	69, 441
BfuAI	ACCTGC	1 cut(s)	29
BisI	GCNGC	1 cut(s)	140
BlsI	GCNGC	1 cut(s)	141
Bme18I	GGWCC	2 cut(s)	149, 265
BmgT120I	GGNCC	3 cut(s)	149, 265, 359
BmiI	GGNNCC	2 cut(s)	43, 266
BmsI	GCATC	3 cut(s)	25, 126, 135
BsaJI	CCNNGG	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	3 cut(s)	367, 473, 518
Bse118I	RCCGGY	1 cut(s)	398
Bse3DI	GCAATG	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	2 cut(s)	141, 436
BseLI	CCNNNNNNNGG	3 cut(s)	367, 473, 518
BseMI	GCAATG	1 cut(s)	309
BseSI	GKGCMC	1 cut(s)	46
BshFI	GGCC	2 cut(s)	360, 398
BshNI	GGYRCC	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	399
BslI	CCNNNNNNNGG	3 cut(s)	367, 473, 518
BsmAI	GTCTC	1 cut(s)	427
BsnI	GGCC	2 cut(s)	360, 398
Bsp1286I	GDGCHC	2 cut(s)	46, 198
Bsp143I	GATC	4 cut(s)	337, 476, 508, 577
Bsp19I	CCATGG	1 cut(s)	366
BspACI	CCGC	1 cut(s)	139
BspANI	GGCC	2 cut(s)	360, 398
BspLI	GGNNCC	2 cut(s)	43, 266
BspMI	ACCTGC	1 cut(s)	29
BspPI	GGATC	3 cut(s)	332, 484, 503
BspT107I	GGYRCC	1 cut(s)	41
BsrDI	GCAATG	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	398
BssAI	RCCGGY	1 cut(s)	398
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	4 cut(s)	337, 476, 508, 577
BssSI	CACGAG	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	366
Bst2BI	CACGAG	1 cut(s)	197
Bst4CI	ACNGT	2 cut(s)	70, 562
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	2 cut(s)	176, 393
BstDSI	CCRYGG	1 cut(s)	366
BstF5I	GGATG	2 cut(s)	141, 436
BstKTI	GATC	4 cut(s)	340, 479, 511, 580
BstMAI	GTCTC	1 cut(s)	427
BstMBI	GATC	4 cut(s)	337, 476, 508, 577
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 404
BstSFI	CTRYAG	2 cut(s)	69, 441
BstSLI	GKGCMC	1 cut(s)	46
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuRI	GGCC	2 cut(s)	360, 398
BtgI	CCRYGG	1 cut(s)	366
BtsCI	GGATG	2 cut(s)	141, 436
BveI	ACCTGC	1 cut(s)	29
Cac8I	GCNNGC	1 cut(s)	429
Cfr10I	RCCGGY	1 cut(s)	398
Cfr13I	GGNCC	3 cut(s)	149, 265, 359
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	3 cut(s)	158, 367, 572
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	2 cut(s)	176, 393
DpnI	GATC	4 cut(s)	339, 478, 510, 579
DpnII	GATC	4 cut(s)	337, 476, 508, 577
Ecl136II	GAGCTC	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	198
Eco47I	GGWCC	2 cut(s)	149, 265
Eco53kI	GAGCTC	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	366
EcoT38I	GRGCYC	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	3 cut(s)	161, 370, 575
FatI	CATG	3 cut(s)	157, 366, 571
Fnu4HI	GCNGC	1 cut(s)	140
FokI	GGATG	2 cut(s)	148, 423
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	1 cut(s)	140
FspBI	CTAG	1 cut(s)	249
GluI	GCNGC	1 cut(s)	140
HaeIII	GGCC	2 cut(s)	360, 398
HapII	CCGG	1 cut(s)	399
HgaI	GACGC	1 cut(s)	170
Hin1II	CATG	3 cut(s)	161, 370, 575
HinfI	GANTC	2 cut(s)	332, 455
HpaII	CCGG	1 cut(s)	399
Hpy188I	TCNGA	3 cut(s)	34, 337, 556
Hpy188III	TCNNGA	4 cut(s)	10, 167, 227, 506
HpyAV	CCTTC	2 cut(s)	233, 469
HpyCH4III	ACNGT	2 cut(s)	70, 562
HpyCH4V	TGCA	5 cut(s)	38, 314, 347, 386, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 404
HpyF3I	CTNAG	2 cut(s)	176, 393
Hsp92II	CATG	3 cut(s)	161, 370, 575
Kzo9I	GATC	4 cut(s)	337, 476, 508, 577
LpnPI	CCDG	9 cut(s)	24, 99, 212, 375, 412, 441, 473, 519, 525
LweI	GCATC	3 cut(s)	25, 126, 135
MaeI	CTAG	1 cut(s)	249
MaeIII	GTNAC	2 cut(s)	280, 546
MalI	GATC	4 cut(s)	339, 478, 510, 579
MboI	GATC	4 cut(s)	337, 476, 508, 577
MboII	GAAGA	1 cut(s)	228
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	2 cut(s)	46, 198
MluCI	AATT	6 cut(s)	47, 298, 350, 375, 387, 414
MnlI	CCTC	3 cut(s)	173, 458, 474
MroXI	GAANNNNTTC	2 cut(s)	222, 375
MseI	TTAA	1 cut(s)	417
MslI	CAYNNNNRTG	1 cut(s)	134
MspI	CCGG	1 cut(s)	399
MwoI	GCNNNNNNNGC	2 cut(s)	170, 404
NcoI	CCATGG	1 cut(s)	366
NdeII	GATC	4 cut(s)	337, 476, 508, 577
NlaIII	CATG	3 cut(s)	161, 370, 575
NlaIV	GGNNCC	2 cut(s)	43, 266
NmuCI	GTSAC	1 cut(s)	546
PaqCI	CACCTGC	1 cut(s)	29
PdmI	GAANNNNTTC	2 cut(s)	222, 375
PfeI	GAWTC	2 cut(s)	332, 455
PkrI	GCNGC	1 cut(s)	141
Psp124BI	GAGCTC	1 cut(s)	198
PspN4I	GGNNCC	2 cut(s)	43, 266
PspPI	GGNCC	3 cut(s)	149, 265, 359
PsuI	RGATCY	1 cut(s)	337
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
RseI	CAYNNNNRTG	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	198
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	1 cut(s)	140
Sau3AI	GATC	4 cut(s)	337, 476, 508, 577
Sau96I	GGNCC	3 cut(s)	149, 265, 359
SduI	GDGCHC	2 cut(s)	46, 198
SetI	ASST	5 cut(s)	43, 175, 198, 250, 287
SfaNI	GCATC	3 cut(s)	25, 126, 135
SfcI	CTRYAG	2 cut(s)	69, 441
SinI	GGWCC	2 cut(s)	149, 265
SmiMI	CAYNNNNRTG	1 cut(s)	134
Sse9I	AATT	6 cut(s)	47, 298, 350, 375, 387, 414
SsiI	CCGC	1 cut(s)	139
SspMI	CTAG	1 cut(s)	249
SstI	GAGCTC	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	2 cut(s)	70, 562
TaqI	TCGA	4 cut(s)	11, 168, 192, 496
TasI	AATT	6 cut(s)	47, 298, 350, 375, 387, 414
TatI	WGTACW	1 cut(s)	22
TauI	GCSGC	1 cut(s)	142
TfiI	GAWTC	2 cut(s)	332, 455
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TseFI	GTSAC	1 cut(s)	546
Tsp45I	GTSAC	1 cut(s)	546
TspDTI	ATGAA	3 cut(s)	339, 425, 560
TspGWI	ACGGA	1 cut(s)	534
VpaK11BI	GGWCC	2 cut(s)	149, 265
XapI	RAATTY	1 cut(s)	375
XmnI	GAANNNNTTC	2 cut(s)	222, 375
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.