Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Reverse (-)

29780823 .. 29781392

Gene Structure 570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG288600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGCGGCTATATGGTCCCAACCATGACGCTCTCGAAGCTCTTAGAGGCTCCAACATCGAGCTCATGCTTGGGGTCGAACATGAATGCCTTCAGGACATATCTTCTAACCAAGCCAGTGCTGATGATTGGGTCCAAAACAATGTGGTAACCTATGGAGATGTCAATTTCAAATACATTGCAGTTGGGAATGAAATAGAATCAGGTCCATTTGCACAATTTGTTGGCCCTGCCATGGAAAAAATTCAAAATTCAATTTCTAAGGCTGGTCTTGCGAACAAAATTAAAGTCTCCACAGCGGTTCATCCTATAGTCCTCCAAGAATCCTCCCCTCCATCAAAAGGATCATTCAAGCAGGATTACCGAGCCTTTCTTGATCCTGTCATTGGTTTTCTTGTGGGAAACCAATCTCCGCTGCTTGTTAATATGTACCCATACTTTAGTTACATTGACAACCGAAAGATTAACCTTCAATATGCTCTTTTCACATATCCATCAGTCTGGTTCAAGATGGACAACTTGGCTACCAAAACTTGTTTGATGCAATTCTGGATGCACATTACTCCGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

189

Amino Acids

21.25

Weight (kDa)

5.76

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	1 - 167	8.3e-47	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	4, 296, 410, 563
AclWI	GGATC	2 cut(s)	349, 368
AcsI	RAATTY	2 cut(s)	240, 247
AcuI	CTGAAG	1 cut(s)	74
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	3 cut(s)	232, 338, 383
AgsI	TTSAA	6 cut(s)	169, 245, 252, 349, 470, 505
AluBI	AGCT	2 cut(s)	38, 61
AluI	AGCT	2 cut(s)	38, 61
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	2 cut(s)	349, 368
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	1 cut(s)	412
ApoI	RAATTY	2 cut(s)	240, 247
ArsI	GACNNNNNNTTYG	2 cut(s)	270, 302
Asp700I	GAANNNNTTC	2 cut(s)	87, 240
AspS9I	GGNCC	4 cut(s)	14, 130, 203, 224
AvaII	GGWCC	3 cut(s)	14, 130, 203
BanII	GRGCYC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	399
BccI	CCATC	3 cut(s)	340, 499, 502
BcoDI	GTCTC	1 cut(s)	292
BfmI	CTRYAG	1 cut(s)	306
BisI	GCNGC	2 cut(s)	5, 413
BlsI	GCNGC	2 cut(s)	6, 414
Bme18I	GGWCC	3 cut(s)	14, 130, 203
BmgT120I	GGNCC	4 cut(s)	14, 130, 203, 224
BmiI	GGNNCC	3 cut(s)	16, 49, 131
BmsI	GCATC	2 cut(s)	528, 540
BsaJI	CCNNGG	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 338, 383
Bse1I	ACTGG	1 cut(s)	114
Bse3DI	GCAATG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	2 cut(s)	301, 555
BseLI	CCNNNNNNNGG	3 cut(s)	232, 338, 383
BseMI	GCAATG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	114
BseXI	GCAGC	1 cut(s)	399
BshFI	GGCC	1 cut(s)	225
BsiHKAI	GWGCWC	1 cut(s)	63
BslI	CCNNNNNNNGG	3 cut(s)	232, 338, 383
BsmAI	GTCTC	1 cut(s)	292
BsmI	GAATGC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	2 cut(s)	341, 373
Bsp19I	CCATGG	1 cut(s)	231
BspACI	CCGC	4 cut(s)	4, 296, 410, 563
BspANI	GGCC	1 cut(s)	225
BspLI	GGNNCC	3 cut(s)	16, 49, 131
BspPI	GGATC	2 cut(s)	349, 368
BsrDI	GCAATG	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	2 cut(s)	341, 373
BssT1I	CCWWGG	1 cut(s)	231
BstDEI	CTNAG	2 cut(s)	41, 258
BstDSI	CCRYGG	1 cut(s)	231
BstEII	GGTNACC	1 cut(s)	145
BstF5I	GGATG	2 cut(s)	301, 555
BstKTI	GATC	2 cut(s)	344, 376
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	2 cut(s)	341, 373
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 269
BstPI	GGTNACC	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	399
BstXI	CCANNNNNNTGG	1 cut(s)	498
BsuRI	GGCC	1 cut(s)	225
BtgI	CCRYGG	1 cut(s)	231
BtsCI	GGATG	2 cut(s)	301, 555
BtsIMutI	CAGTG	1 cut(s)	121
Cfr13I	GGNCC	4 cut(s)	14, 130, 203, 224
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	4 cut(s)	23, 64, 80, 232
CviJI	RGCY	9 cut(s)	7, 38, 48, 61, 113, 225, 263, 365, 521
CviKI_1	RGCY	9 cut(s)	7, 38, 48, 61, 113, 225, 263, 365, 521
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	2 cut(s)	41, 258
DpnI	GATC	2 cut(s)	343, 375
DpnII	GATC	2 cut(s)	341, 373
Ecl136II	GAGCTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	231
Eco24I	GRGCYC	1 cut(s)	63
Eco47I	GGWCC	3 cut(s)	14, 130, 203
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	74
Eco91I	GGTNACC	1 cut(s)	145
EcoICRI	GAGCTC	1 cut(s)	61
EcoO65I	GGTNACC	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	231
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	4 cut(s)	26, 67, 83, 235
FatI	CATG	4 cut(s)	22, 63, 79, 231
Fnu4HI	GCNGC	2 cut(s)	5, 413
FokI	GGATG	2 cut(s)	288, 562
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	2 cut(s)	5, 413
GluI	GCNGC	2 cut(s)	5, 413
HaeIII	GGCC	1 cut(s)	225
HgaI	GACGC	1 cut(s)	35
Hin1II	CATG	4 cut(s)	26, 67, 83, 235
HinfI	GANTC	2 cut(s)	197, 320
Hpy188III	TCNNGA	5 cut(s)	32, 92, 371, 505, 547
HpyAV	CCTTC	2 cut(s)	98, 476
HpyCH4V	TGCA	4 cut(s)	179, 212, 541, 553
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 269
HpyF3I	CTNAG	2 cut(s)	41, 258
Hsp92II	CATG	4 cut(s)	26, 67, 83, 235
Kzo9I	GATC	2 cut(s)	341, 373
LmnI	GCTCC	1 cut(s)	53
LpnPI	CCDG	9 cut(s)	77, 127, 186, 240, 249, 338, 390, 484, 532
Lsp1109I	GCAGC	1 cut(s)	399
LweI	GCATC	2 cut(s)	528, 540
MaeIII	GTNAC	2 cut(s)	145, 440
MalI	GATC	2 cut(s)	343, 375
MboI	GATC	2 cut(s)	341, 373
MboII	GAAGA	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	7 cut(s)	163, 215, 240, 247, 252, 279, 542
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	4 cut(s)	38, 323, 334, 339
MroXI	GAANNNNTTC	2 cut(s)	87, 240
MseI	TTAA	3 cut(s)	282, 420, 462
MspA1I	CMGCKG	2 cut(s)	296, 412
Mva1269I	GAATGC	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	35, 269
NcoI	CCATGG	1 cut(s)	231
NdeII	GATC	2 cut(s)	341, 373
NlaIII	CATG	4 cut(s)	26, 67, 83, 235
NlaIV	GGNNCC	3 cut(s)	16, 49, 131
PctI	GAATGC	1 cut(s)	89
PdmI	GAANNNNTTC	2 cut(s)	87, 240
PfeI	GAWTC	2 cut(s)	197, 320
PkrI	GCNGC	2 cut(s)	6, 414
Psp124BI	GAGCTC	1 cut(s)	63
PspEI	GGTNACC	1 cut(s)	145
PspN4I	GGNNCC	3 cut(s)	16, 49, 131
PspPI	GGNCC	4 cut(s)	14, 130, 203, 224
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
SacI	GAGCTC	1 cut(s)	63
SaqAI	TTAA	3 cut(s)	282, 420, 462
SatI	GCNGC	2 cut(s)	5, 413
Sau3AI	GATC	2 cut(s)	341, 373
Sau96I	GGNCC	4 cut(s)	14, 130, 203, 224
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	5 cut(s)	40, 63, 152, 205, 468
SfaNI	GCATC	2 cut(s)	528, 540
SfcI	CTRYAG	1 cut(s)	306
SinI	GGWCC	3 cut(s)	14, 130, 203
Sse9I	AATT	7 cut(s)	163, 215, 240, 247, 252, 279, 542
SsiI	CCGC	4 cut(s)	4, 296, 410, 563
SstI	GAGCTC	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	231
TaqI	TCGA	3 cut(s)	33, 57, 75
TasI	AATT	7 cut(s)	163, 215, 240, 247, 252, 279, 542
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	197, 320
Tru1I	TTAA	3 cut(s)	282, 420, 462
Tru9I	TTAA	3 cut(s)	282, 420, 462
TscAI	CASTG	1 cut(s)	121
TseI	GCWGC	1 cut(s)	412
TspDTI	ATGAA	3 cut(s)	96, 204, 290
TspRI	CASTG	1 cut(s)	121
VpaK11BI	GGWCC	3 cut(s)	14, 130, 203
XapI	RAATTY	2 cut(s)	240, 247
XmnI	GAANNNNTTC	2 cut(s)	87, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.