Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Forward (+)

20418806 .. 20420035

Gene Structure 1230 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023241

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGATGGCCAAGTCCCATGTAGTTGCAGTTTCCAAGTTACTACTTTTTGGGATCCTATTGGCTACCTTTACCACAACAGGTGCCCAAATTGGTGTTTGTTATGGAACTGTAGCAAATAATCTACCAGAACCACGACAAGTAATATCACTTTACAACCAACATAACATCAAAAGGATGCGGCTATATGGTCCTAACCATGACGCTCTCGAAGCTCTTAGAGGCTCCAATATCGAGCTCATACTTGGGGTCGAACACGAACGCCTTCAGGACATATCTTCTAACCAAGCCAGTGCTGATGATTGGGTCAAAAACAATGTGGTAACCTATGGAGATGTCAATTTCAAATACATTGCGGTTGGGAATGAAATAGAATCAGGTCCATTTGCACAATTTGTTGGCCCTGCCATGGAAAAAATTCAAAATGCAATTTCTAAGGCCGGTCTTGCAAACAAAATTAAAGTCTCGACAGCGGTTCATCCTATAGTCCTCCAAGAATCCTTCCCTCCATCAAAAGGATCATTCAAGCAGGATTATAGGGCCTTTCTTGATCCTGTCATTGGTTTCCTTGTGGGAAACCAATCTCCGTTGCTTGTTAATATGTACCCATACTTTAGTTACATTGACAACCGAGAGATTAACCTTCAATATGCTCTTTTCACATATCCATCAGTTCTGGTTCAAGATGGACAACTTGGCTACAAAAACTTGTTTGATGCACTTCTGGATGCACATTACTCCGCTTTAGAGAAGGCCGGAGGCAGTTCTTTGAAAATTGTTGTATCGGAGACGGGTTGGCCTTCCGCTGGTGGTGATGGCGAAGTGACAACAATAGAGAATGCGAGAATCTACAACTCAAATGTGATTAATCATGTCAAGGGTGGTACTCCGAAGAAACCTGAAGGTCCTATAGAAACTTACATATTTGCCATGTTCAATGAGAATGAGAAAACTGGAGCAGAGACTGAGAAGAATTTCGGGCTCTTTTTACCAACTGGAGATCCTGTTTATCCTATCAATTTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

342

Amino Acids

37.42

Weight (kDa)

5.68

Isoelectric Point (pI)

34.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	30 - 340	2.1e-107	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	80
AciI	CCGC	5 cut(s)	178, 353, 470, 738, 801
AclWI	GGATC	5 cut(s)	46, 59, 523, 542, 992
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	2 cut(s)	414, 970
AcuI	CTGAAG	2 cut(s)	248, 918
AfaI	GTAC	2 cut(s)	602, 883
AfiI	CCNNNNNNNGG	4 cut(s)	406, 512, 557, 803
AgsI	TTSAA	8 cut(s)	343, 419, 523, 644, 680, 769, 934, 1021
AluBI	AGCT	2 cut(s)	212, 235
AluI	AGCT	2 cut(s)	212, 235
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	3 cut(s)	466, 779, 953
AlwI	GGATC	5 cut(s)	46, 59, 523, 542, 992
AlwNI	CAGNNNCTG	1 cut(s)	962
AoxI	GGCC	6 cut(s)	6, 397, 435, 537, 750, 794
ApoI	RAATTY	2 cut(s)	414, 970
ArsI	GACNNNNNNTTYG	2 cut(s)	444, 476
AseI	ATTAAT	1 cut(s)	864
Asp700I	GAANNNNTTC	3 cut(s)	261, 414, 971
AspS9I	GGNCC	5 cut(s)	188, 377, 398, 537, 902
AsuHPI	GGTGA	1 cut(s)	821
AvaII	GGWCC	3 cut(s)	188, 377, 902
BaeGI	GKGCMC	1 cut(s)	85
BalI	TGGCCA	1 cut(s)	8
BamHI	GGATCC	1 cut(s)	51
BanI	GGYRCC	1 cut(s)	80
BanII	GRGCYC	2 cut(s)	237, 981
Bbv12I	GWGCWC	1 cut(s)	237
BccI	CCATC	4 cut(s)	514, 673, 677, 806
BcoDI	GTCTC	3 cut(s)	466, 779, 953
BfmI	CTRYAG	3 cut(s)	108, 480, 906
BisI	GCNGC	1 cut(s)	179
BlsI	GCNGC	1 cut(s)	180
Bme18I	GGWCC	3 cut(s)	188, 377, 902
BmgT120I	GGNCC	5 cut(s)	188, 377, 398, 537, 902
BmiI	GGNNCC	3 cut(s)	53, 82, 223
BmsI	GCATC	3 cut(s)	165, 703, 715
BpmI	CTGGAG	2 cut(s)	972, 1014
BsaJI	CCNNGG	1 cut(s)	405
BsaXI	ACNNNNNCTCC	2 cut(s)	987, 1017
Bsc4I	CCNNNNNNNGG	4 cut(s)	406, 512, 557, 803
Bse118I	RCCGGY	1 cut(s)	437
Bse1I	ACTGG	3 cut(s)	288, 955, 997
Bse3DI	GCAATG	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	405
BseGI	GGATG	3 cut(s)	180, 475, 730
BseLI	CCNNNNNNNGG	4 cut(s)	406, 512, 557, 803
BseMI	GCAATG	1 cut(s)	348
BseMII	CTCAG	1 cut(s)	954
BseNI	ACTGG	3 cut(s)	288, 955, 997
BseSI	GKGCMC	1 cut(s)	85
BshFI	GGCC	6 cut(s)	8, 399, 437, 539, 752, 796
BshNI	GGYRCC	1 cut(s)	80
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	2 cut(s)	438, 753
BslI	CCNNNNNNNGG	4 cut(s)	406, 512, 557, 803
BsmAI	GTCTC	3 cut(s)	466, 779, 953
BsmBI	CGTCTC	1 cut(s)	779
BsmI	GAATGC	1 cut(s)	841
BsnI	GGCC	6 cut(s)	8, 399, 437, 539, 752, 796
Bsp1286I	GDGCHC	3 cut(s)	85, 237, 981
Bsp143I	GATC	4 cut(s)	51, 515, 547, 997
Bsp19I	CCATGG	1 cut(s)	405
BspACI	CCGC	5 cut(s)	178, 353, 470, 738, 801
BspANI	GGCC	6 cut(s)	8, 399, 437, 539, 752, 796
BspCNI	CTCAG	1 cut(s)	955
BspLI	GGNNCC	3 cut(s)	53, 82, 223
BspPI	GGATC	5 cut(s)	46, 59, 523, 542, 992
BspT107I	GGYRCC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	348
BsrFI	RCCGGY	1 cut(s)	437
BsrI	ACTGG	3 cut(s)	288, 955, 997
BssAI	RCCGGY	1 cut(s)	437
BssECI	CCNNGG	1 cut(s)	405
BssMI	GATC	4 cut(s)	51, 515, 547, 997
BssT1I	CCWWGG	1 cut(s)	405
Bst4CI	ACNGT	1 cut(s)	109
BstDEI	CTNAG	3 cut(s)	215, 432, 963
BstDSI	CCRYGG	1 cut(s)	405
BstEII	GGTNACC	1 cut(s)	319
BstF5I	GGATG	3 cut(s)	180, 475, 730
BstKTI	GATC	4 cut(s)	54, 518, 550, 1000
BstMAI	GTCTC	3 cut(s)	466, 779, 953
BstMBI	GATC	4 cut(s)	51, 515, 547, 997
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 443
BstPI	GGTNACC	1 cut(s)	319
BstSFI	CTRYAG	3 cut(s)	108, 480, 906
BstSLI	GKGCMC	1 cut(s)	85
BstX2I	RGATCY	2 cut(s)	51, 997
BstYI	RGATCY	2 cut(s)	51, 997
BsuRI	GGCC	6 cut(s)	8, 399, 437, 539, 752, 796
BtgI	CCRYGG	1 cut(s)	405
BtsCI	GGATG	3 cut(s)	180, 475, 730
BtsIMutI	CAGTG	1 cut(s)	295
CaiI	CAGNNNCTG	1 cut(s)	962
Cfr10I	RCCGGY	1 cut(s)	437
Cfr13I	GGNCC	5 cut(s)	188, 377, 398, 537, 902
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	2 cut(s)	601, 882
CviAII	CATG	5 cut(s)	17, 197, 406, 869, 928
CviQI	GTAC	2 cut(s)	601, 882
DdeI	CTNAG	3 cut(s)	215, 432, 963
DpnI	GATC	4 cut(s)	53, 517, 549, 999
DpnII	GATC	4 cut(s)	51, 515, 547, 997
EaeI	YGGCCR	1 cut(s)	6
Ecl136II	GAGCTC	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	405
Eco24I	GRGCYC	2 cut(s)	237, 981
Eco47I	GGWCC	3 cut(s)	188, 377, 902
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	2 cut(s)	248, 918
Eco91I	GGTNACC	1 cut(s)	319
EcoICRI	GAGCTC	1 cut(s)	235
EcoO109I	RGGNCCY	2 cut(s)	537, 902
EcoO65I	GGTNACC	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	405
EcoT38I	GRGCYC	2 cut(s)	237, 981
ErhI	CCWWGG	1 cut(s)	405
Esp3I	CGTCTC	1 cut(s)	779
FaeI	CATG	5 cut(s)	20, 200, 409, 872, 931
FatI	CATG	5 cut(s)	16, 196, 405, 868, 927
Fnu4HI	GCNGC	1 cut(s)	179
FokI	GGATG	3 cut(s)	187, 462, 737
FriOI	GRGCYC	2 cut(s)	237, 981
Fsp4HI	GCNGC	1 cut(s)	179
GluI	GCNGC	1 cut(s)	179
GsuI	CTGGAG	2 cut(s)	972, 1014
HaeIII	GGCC	6 cut(s)	8, 399, 437, 539, 752, 796
HapII	CCGG	2 cut(s)	438, 753
HgaI	GACGC	1 cut(s)	209
Hin1II	CATG	5 cut(s)	20, 200, 409, 872, 931
HinfI	GANTC	3 cut(s)	371, 494, 843
HpaII	CCGG	2 cut(s)	438, 753
HphI	GGTGA	1 cut(s)	821
Hpy188I	TCNGA	2 cut(s)	784, 888
Hpy188III	TCNNGA	6 cut(s)	206, 266, 463, 545, 680, 722
HpyAV	CCTTC	6 cut(s)	272, 508, 650, 742, 807, 893
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	6 cut(s)	26, 386, 425, 446, 716, 728
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 443
HpyF3I	CTNAG	3 cut(s)	215, 432, 963
Hsp92II	CATG	5 cut(s)	20, 200, 409, 872, 931
Kzo9I	GATC	4 cut(s)	51, 515, 547, 997
LmnI	GCTCC	2 cut(s)	227, 953
LweI	GCATC	3 cut(s)	165, 703, 715
MaeIII	GTNAC	4 cut(s)	36, 319, 614, 820
MalI	GATC	4 cut(s)	53, 517, 549, 999
MboI	GATC	4 cut(s)	51, 515, 547, 997
MboII	GAAGA	3 cut(s)	267, 901, 979
MflI	RGATCY	2 cut(s)	51, 997
MhlI	GDGCHC	3 cut(s)	85, 237, 981
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	9 cut(s)	87, 337, 389, 414, 426, 453, 771, 970, 1015
MluNI	TGGCCA	1 cut(s)	8
MnlI	CCTC	4 cut(s)	212, 497, 513, 749
Mox20I	TGGCCA	1 cut(s)	8
MroXI	GAANNNNTTC	3 cut(s)	261, 414, 971
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	4 cut(s)	456, 594, 636, 864
Msp20I	TGGCCA	1 cut(s)	8
MspA1I	CMGCKG	2 cut(s)	470, 803
MspI	CCGG	2 cut(s)	438, 753
Mva1269I	GAATGC	1 cut(s)	841
MwoI	GCNNNNNNNGC	2 cut(s)	209, 443
NcoI	CCATGG	1 cut(s)	405
NdeII	GATC	4 cut(s)	51, 515, 547, 997
NlaIII	CATG	5 cut(s)	20, 200, 409, 872, 931
NlaIV	GGNNCC	3 cut(s)	53, 82, 223
NmuCI	GTSAC	1 cut(s)	820
PctI	GAATGC	1 cut(s)	841
PdmI	GAANNNNTTC	3 cut(s)	261, 414, 971
PfeI	GAWTC	3 cut(s)	371, 494, 843
PkrI	GCNGC	1 cut(s)	180
PpuMI	RGGWCCY	1 cut(s)	902
PshBI	ATTAAT	1 cut(s)	864
Psp124BI	GAGCTC	1 cut(s)	237
Psp5II	RGGWCCY	1 cut(s)	902
PspEI	GGTNACC	1 cut(s)	319
PspN4I	GGNNCC	3 cut(s)	53, 82, 223
PspPI	GGNCC	5 cut(s)	188, 377, 398, 537, 902
PspPPI	RGGWCCY	1 cut(s)	902
PstNI	CAGNNNCTG	1 cut(s)	962
PsuI	RGATCY	2 cut(s)	51, 997
RsaI	GTAC	2 cut(s)	602, 883
RsaNI	GTAC	2 cut(s)	601, 882
SacI	GAGCTC	1 cut(s)	237
SaqAI	TTAA	4 cut(s)	456, 594, 636, 864
SatI	GCNGC	1 cut(s)	179
Sau3AI	GATC	4 cut(s)	51, 515, 547, 997
Sau96I	GGNCC	5 cut(s)	188, 377, 398, 537, 902
SduI	GDGCHC	3 cut(s)	85, 237, 981
SetI	ASST	9 cut(s)	68, 82, 214, 237, 326, 379, 642, 898, 904
SfaNI	GCATC	3 cut(s)	165, 703, 715
SfcI	CTRYAG	3 cut(s)	108, 480, 906
SinI	GGWCC	3 cut(s)	188, 377, 902
Sse9I	AATT	9 cut(s)	87, 337, 389, 414, 426, 453, 771, 970, 1015
SsiI	CCGC	5 cut(s)	178, 353, 470, 738, 801
SstI	GAGCTC	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	405
TaaI	ACNGT	1 cut(s)	109
TaqI	TCGA	4 cut(s)	207, 231, 249, 464
TasI	AATT	9 cut(s)	87, 337, 389, 414, 426, 453, 771, 970, 1015
TauI	GCSGC	1 cut(s)	181
TfiI	GAWTC	3 cut(s)	371, 494, 843
Tru1I	TTAA	4 cut(s)	456, 594, 636, 864
Tru9I	TTAA	4 cut(s)	456, 594, 636, 864
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	820
Tsp45I	GTSAC	1 cut(s)	820
TspDTI	ATGAA	2 cut(s)	378, 464
TspGWI	ACGGA	1 cut(s)	573
TspRI	CASTG	1 cut(s)	295
VpaK11BI	GGWCC	3 cut(s)	188, 377, 902
VspI	ATTAAT	1 cut(s)	864
XapI	RAATTY	2 cut(s)	414, 970
XmnI	GAANNNNTTC	3 cut(s)	261, 414, 971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.