Rmu_ssc0000308.1_g000021

Glucan endo-1,3-beta-glucosidase, basic

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000308.1
Physical Location & Seq
Forward (+)
79759 .. 80459
701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000308.1_g000021.1.cds

Sequence Viewer

Length: 585 bp
atgcacaagatggctaagtcctatgtagttgccaaagtcccttctgtattttccaagttactactattgggtatcctcatggctacctttaccacaacaggtgcccagattggtgtttgtcatggaaatgtcgaaaacgaacgccttcaggatatttcttctaaccaagccagtgccgatgattgggtccaaaaaaatgttgtaacctatggaaacgtccatttcaaatacattgcggttggaaatgaaatagatgctacaggtcctttagcaccatttgttggccctgccacggaaaaaattcaaaatgcaatttcgaaagctggtcttgctaataaaattaaagtcttctcggcagttcatcctataatcctccaagaatcctccgctccatcaataggaccattcaggccgaattaccgaccctttcttgatcctatcatcagtttccttgtgggaaagcagtctccgttgcttcataatacttacccatactttagttacattgacaacagagcaattaaccttcaatatgctcttctagtttatcacatggtgtctggttttgttcttcttctcttctag

Protein Analysis

194

Amino Acids

21.31

Weight (kDa)

9.14

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000485)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16260 AT4G16260
fragaria_vesca FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis pycom12g07050 pycom12g07100
rosa_chinensis RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 281
AccBSI CCGCTC 1 cut(s) 389
AciI CCGC 2 cut(s) 236, 387
AclWI GGATC 1 cut(s) 428
AcsI RAATTY 1 cut(s) 300
AcuI CTGAAG 1 cut(s) 131
AdeI CACNNNGTG 1 cut(s) 556
AfiI CCNNNNNNNGG 4 cut(s) 183, 281, 292, 398
AgsI TTSAA 3 cut(s) 226, 305, 530
AluBI AGCT 1 cut(s) 323
AluI AGCT 1 cut(s) 323
Alw26I GTCTC 1 cut(s) 471
AlwI GGATC 1 cut(s) 428
AoxI GGCC 2 cut(s) 283, 410
ApoI RAATTY 1 cut(s) 300
Asp700I GAANNNNTTC 2 cut(s) 144, 300
AspS9I GGNCC 4 cut(s) 187, 263, 284, 401
AsuII TTCGAA 1 cut(s) 317
AvaII GGWCC 3 cut(s) 187, 263, 401
BaeGI GKGCMC 1 cut(s) 106
BanI GGYRCC 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 340
BccI CCATC 2 cut(s) 4, 400
BciVI GTATCC 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 471
BfaI CTAG 2 cut(s) 542, 583
BfmI CTRYAG 1 cut(s) 258
BfuI GTATCC 1 cut(s) 83
Bme18I GGWCC 3 cut(s) 187, 263, 401
BmgT120I GGNCC 4 cut(s) 187, 263, 284, 401
BmiI GGNNCC 2 cut(s) 103, 188
BmsI GCATC 1 cut(s) 244
BpiI GAAGAC 1 cut(s) 340
Bpu14I TTCGAA 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 291
Bsc4I CCNNNNNNNGG 4 cut(s) 183, 281, 292, 398
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 1 cut(s) 361
BseLI CCNNNNNNNGG 4 cut(s) 183, 281, 292, 398
BseMI GCAATG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 171
BseSI GKGCMC 1 cut(s) 106
BshFI GGCC 2 cut(s) 285, 412
BshNI GGYRCC 1 cut(s) 101
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 4 cut(s) 183, 281, 292, 398
BsmAI GTCTC 1 cut(s) 471
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 2 cut(s) 285, 412
Bsp119I TTCGAA 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 1 cut(s) 433
BspACI CCGC 2 cut(s) 236, 387
BspANI GGCC 2 cut(s) 285, 412
BspLI GGNNCC 2 cut(s) 103, 188
BspPI GGATC 1 cut(s) 428
BspQI GCTCTTC 1 cut(s) 543
BspT104I TTCGAA 1 cut(s) 317
BspT107I GGYRCC 1 cut(s) 101
BsrBI CCGCTC 1 cut(s) 389
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 1 cut(s) 433
Bst6I CTCTTC 1 cut(s) 543
BstBI TTCGAA 1 cut(s) 317
BstDEI CTNAG 1 cut(s) 15
BstDSI CCRYGG 1 cut(s) 291
BstF5I GGATG 1 cut(s) 361
BstKTI GATC 1 cut(s) 436
BstMAI GTCTC 1 cut(s) 471
BstMBI GATC 1 cut(s) 433
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstSFI CTRYAG 1 cut(s) 258
BstSLI GKGCMC 1 cut(s) 106
BstV2I GAAGAC 1 cut(s) 340
BsuI GTATCC 1 cut(s) 83
BsuRI GGCC 2 cut(s) 285, 412
BtgI CCRYGG 1 cut(s) 291
BtsCI GGATG 1 cut(s) 361
BtsIMutI CAGTG 1 cut(s) 178
Cfr13I GGNCC 4 cut(s) 187, 263, 284, 401
CviAII CATG 3 cut(s) 79, 122, 553
CviJI RGCY 6 cut(s) 14, 83, 170, 285, 323, 412
CviKI_1 RGCY 6 cut(s) 14, 83, 170, 285, 323, 412
DdeI CTNAG 1 cut(s) 15
DpnI GATC 1 cut(s) 435
DpnII GATC 1 cut(s) 433
DraIII CACNNNGTG 1 cut(s) 556
Eam1104I CTCTTC 1 cut(s) 543
EarI CTCTTC 1 cut(s) 543
Eco47I GGWCC 3 cut(s) 187, 263, 401
Eco57I CTGAAG 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 263
FaeI CATG 3 cut(s) 82, 125, 556
FaiI YATR 9 cut(s) 24, 80, 123, 210, 368, 480, 493, 534, 554
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FaqI GGGAC 1 cut(s) 23
FatI CATG 3 cut(s) 78, 121, 552
FokI GGATG 1 cut(s) 348
FspBI CTAG 2 cut(s) 542, 583
HaeIII GGCC 2 cut(s) 285, 412
Hin1II CATG 3 cut(s) 82, 125, 556
HinfI GANTC 1 cut(s) 380
Hpy188III TCNNGA 2 cut(s) 149, 431
HpyAV CCTTC 3 cut(s) 51, 155, 536
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 2 cut(s) 4, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 1 cut(s) 15
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 3 cut(s) 82, 125, 556
Kzo9I GATC 1 cut(s) 433
LguI GCTCTTC 1 cut(s) 543
LmnI GCTCC 1 cut(s) 394
LpnPI CCDG 9 cut(s) 84, 119, 134, 184, 246, 300, 309, 394, 546
LweI GCATC 1 cut(s) 244
MaeI CTAG 2 cut(s) 542, 583
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 3 cut(s) 57, 202, 500
MalI GATC 1 cut(s) 435
MbiI CCGCTC 1 cut(s) 389
MboI GATC 1 cut(s) 433
MboII GAAGA 6 cut(s) 150, 340, 530, 563, 566, 571
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 5 cut(s) 300, 312, 339, 415, 519
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 3 cut(s) 86, 383, 394
MroXI GAANNNNTTC 2 cut(s) 144, 300
MseI TTAA 2 cut(s) 342, 522
MslI CAYNNNNRTG 1 cut(s) 126
MwoI GCNNNNNNNGC 1 cut(s) 329
NdeII GATC 1 cut(s) 433
NlaIII CATG 3 cut(s) 82, 125, 556
NlaIV GGNNCC 2 cut(s) 103, 188
NmeAIII GCCGAG 1 cut(s) 332
NspV TTCGAA 1 cut(s) 317
PciSI GCTCTTC 1 cut(s) 543
PdmI GAANNNNTTC 2 cut(s) 144, 300
PfeI GAWTC 1 cut(s) 380
PflMI CCANNNNNTGG 1 cut(s) 281
PpuMI RGGWCCY 1 cut(s) 263
Psp5II RGGWCCY 1 cut(s) 263
PspN4I GGNNCC 2 cut(s) 103, 188
PspPI GGNCC 4 cut(s) 187, 263, 284, 401
PspPPI RGGWCCY 1 cut(s) 263
RseI CAYNNNNRTG 1 cut(s) 126
SapI GCTCTTC 1 cut(s) 543
SaqAI TTAA 2 cut(s) 342, 522
Sau3AI GATC 1 cut(s) 433
Sau96I GGNCC 4 cut(s) 187, 263, 284, 401
SduI GDGCHC 1 cut(s) 106
SetI ASST 7 cut(s) 89, 103, 209, 219, 265, 325, 528
SfaNI GCATC 1 cut(s) 244
SfcI CTRYAG 1 cut(s) 258
SfuI TTCGAA 1 cut(s) 317
SinI GGWCC 3 cut(s) 187, 263, 401
SmiMI CAYNNNNRTG 1 cut(s) 126
Sse9I AATT 5 cut(s) 300, 312, 339, 415, 519
SsiI CCGC 2 cut(s) 236, 387
SspMI CTAG 2 cut(s) 542, 583
TaiI ACGT 1 cut(s) 219
TaqI TCGA 2 cut(s) 132, 317
TasI AATT 5 cut(s) 300, 312, 339, 415, 519
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 2 cut(s) 342, 522
Tru9I TTAA 2 cut(s) 342, 522
TscAI CASTG 1 cut(s) 178
TspDTI ATGAA 3 cut(s) 261, 350, 467
TspGWI ACGGA 2 cut(s) 308, 459
TspRI CASTG 1 cut(s) 178
Van91I CCANNNNNTGG 1 cut(s) 281
VpaK11BI GGWCC 3 cut(s) 187, 263, 401
XapI RAATTY 1 cut(s) 300
XmnI GAANNNNTTC 2 cut(s) 144, 300
XspI CTAG 2 cut(s) 542, 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.