Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Forward (+)

29426236 .. 29427276

Gene Structure 1041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g37370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGTCCTAACCGTGACGCTCTCGAAGCTCTTAGAGGCTCCAACATCGATCGAGCTCATCGGTGTCGAAAACGAACGCCTTCAGGATTTTTCTTCTAATCAGGCCAGTGCTGATGACTGGGTCCAAAGAAATGTGTTTGATGCGATGCTTGATGCACCTTACGCTGCTTTAGAGAAGGCCGGCGGTGGTTCATTGCGAATAGTAGTATCGGAGACCGGTTGGCCCTCCGCTGGTGGTGATGGTCAAGTGACAACAAAGGAGAATGCGAGAGTTTACAACTCGAATGTGATCATGTCAAGGGTGGCACACCAAGGAGGCCTGGATCTCCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

111

Amino Acids

11.81

Weight (kDa)

4.67

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	33 - 98	6.3e-17	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	183, 228
AclWI	GGATC	1 cut(s)	330
AcuI	CTGAAG	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgeI	ACCGGT	1 cut(s)	215
AjnI	CCWGG	1 cut(s)	318
AluBI	AGCT	2 cut(s)	28, 55
AluI	AGCT	2 cut(s)	28, 55
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	1 cut(s)	330
AoxI	GGCC	4 cut(s)	102, 177, 221, 316
ApeKI	GCWGC	1 cut(s)	164
AsiGI	ACCGGT	1 cut(s)	215
Asp700I	GAANNNNTTC	1 cut(s)	78
AspS9I	GGNCC	3 cut(s)	4, 121, 222
AsuHPI	GGTGA	1 cut(s)	248
AvaII	GGWCC	2 cut(s)	4, 121
BanII	GRGCYC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	1 cut(s)	233
BciT130I	CCWGG	1 cut(s)	320
BclI	TGATCA	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	206
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
Bme1390I	CCNGG	1 cut(s)	320
Bme18I	GGWCC	2 cut(s)	4, 121
BmgT120I	GGNCC	3 cut(s)	4, 121, 222
BmiI	GGNNCC	2 cut(s)	39, 122
BmrFI	CCNGG	1 cut(s)	320
BmrI	ACTGGG	1 cut(s)	127
BmsI	GCATC	3 cut(s)	130, 135, 142
BmuI	ACTGGG	1 cut(s)	127
Bsa29I	ATCGAT	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	310
BsaWI	WCCGGW	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse118I	RCCGGY	2 cut(s)	179, 215
Bse1I	ACTGG	2 cut(s)	105, 122
Bse3DI	GCAATG	1 cut(s)	191
BseBI	CCWGG	1 cut(s)	320
BseCI	ATCGAT	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	310
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMI	GCAATG	1 cut(s)	191
BseNI	ACTGG	2 cut(s)	105, 122
BseXI	GCAGC	1 cut(s)	151
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	4 cut(s)	104, 179, 223, 318
BshTI	ACCGGT	1 cut(s)	215
BshVI	ATCGAT	1 cut(s)	47
BsiEI	CGRYCG	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	57
BsiSI	CCGG	2 cut(s)	180, 216
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	206
BsmI	GAATGC	1 cut(s)	268
BsnI	GGCC	4 cut(s)	104, 179, 223, 318
Bso31I	GGTCTC	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	3 cut(s)	48, 288, 322
BspACI	CCGC	2 cut(s)	183, 228
BspANI	GGCC	4 cut(s)	104, 179, 223, 318
BspDI	ATCGAT	1 cut(s)	47
BspLI	GGNNCC	2 cut(s)	39, 122
BspPI	GGATC	1 cut(s)	330
BspTNI	GGTCTC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	191
BsrFI	RCCGGY	2 cut(s)	179, 215
BsrI	ACTGG	2 cut(s)	105, 122
BssAI	RCCGGY	2 cut(s)	179, 215
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	3 cut(s)	48, 288, 322
BssT1I	CCWWGG	1 cut(s)	310
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	1 cut(s)	31
BstKTI	GATC	3 cut(s)	51, 291, 325
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	3 cut(s)	48, 288, 322
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 161
BstNI	CCWGG	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
Bsu15I	ATCGAT	1 cut(s)	47
BsuRI	GGCC	4 cut(s)	104, 179, 223, 318
BsuTUI	ATCGAT	1 cut(s)	47
BtgZI	GCGATG	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	181
Cfr10I	RCCGGY	2 cut(s)	179, 215
Cfr13I	GGNCC	3 cut(s)	4, 121, 222
ClaI	ATCGAT	1 cut(s)	47
CseI	GACGC	1 cut(s)	25
CspAI	ACCGGT	1 cut(s)	215
CviAII	CATG	1 cut(s)	292
CviJI	RGCY	7 cut(s)	28, 38, 55, 104, 179, 223, 318
CviKI_1	RGCY	7 cut(s)	28, 38, 55, 104, 179, 223, 318
DdeI	CTNAG	1 cut(s)	31
DpnI	GATC	3 cut(s)	50, 290, 324
DpnII	GATC	3 cut(s)	48, 288, 322
Ecl136II	GAGCTC	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	310
Eco147I	AGGCCT	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	206
Eco47I	GGWCC	2 cut(s)	4, 121
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	65
EcoICRI	GAGCTC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	310
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	310
FaeI	CATG	1 cut(s)	295
FaiI	YATR	1 cut(s)	293
FatI	CATG	1 cut(s)	291
FbaI	TGATCA	1 cut(s)	288
Fnu4HI	GCNGC	1 cut(s)	165
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	165
GluI	GCNGC	1 cut(s)	165
HaeIII	GGCC	4 cut(s)	104, 179, 223, 318
HapII	CCGG	2 cut(s)	180, 216
HgaI	GACGC	1 cut(s)	25
Hin1II	CATG	1 cut(s)	295
HpaII	CCGG	2 cut(s)	180, 216
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	2 cut(s)	211, 329
Hpy188III	TCNNGA	2 cut(s)	22, 83
Hpy8I	GTNNAC	1 cut(s)	274
HpyAV	CCTTC	2 cut(s)	89, 169
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4V	TGCA	1 cut(s)	155
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 161
HpyF3I	CTNAG	1 cut(s)	31
Hsp92II	CATG	1 cut(s)	295
KroI	GCCGGC	1 cut(s)	179
KroNI	GCCGGC	1 cut(s)	181
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	3 cut(s)	48, 288, 322
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	8 cut(s)	68, 86, 103, 118, 193, 216, 229, 305
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	3 cut(s)	130, 135, 142
MaeIII	GTNAC	2 cut(s)	13, 247
MalI	GATC	3 cut(s)	50, 290, 324
MboI	GATC	3 cut(s)	48, 288, 322
MboII	GAAGA	1 cut(s)	84
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	1 cut(s)	57
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	3 cut(s)	28, 235, 308
MroNI	GCCGGC	1 cut(s)	179
MroXI	GAANNNNTTC	1 cut(s)	78
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	2 cut(s)	180, 216
MspR9I	CCNGG	1 cut(s)	320
Mva1269I	GAATGC	1 cut(s)	268
MvaI	CCWGG	1 cut(s)	320
MwoI	GCNNNNNNNGC	2 cut(s)	25, 161
NaeI	GCCGGC	1 cut(s)	181
NdeII	GATC	3 cut(s)	48, 288, 322
NgoMIV	GCCGGC	1 cut(s)	179
NlaIII	CATG	1 cut(s)	295
NlaIV	GGNNCC	2 cut(s)	39, 122
NmuCI	GTSAC	2 cut(s)	13, 247
PceI	AGGCCT	1 cut(s)	318
PctI	GAATGC	1 cut(s)	268
PdiI	GCCGGC	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	78
PflFI	GACNNNGTC	1 cut(s)	119
PinAI	ACCGGT	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	166
Ple19I	CGATCG	1 cut(s)	51
Psp124BI	GAGCTC	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	2 cut(s)	39, 122
PspPI	GGNCC	3 cut(s)	4, 121, 222
PsuI	RGATCY	1 cut(s)	322
PsyI	GACNNNGTC	1 cut(s)	119
PvuI	CGATCG	1 cut(s)	51
SacI	GAGCTC	1 cut(s)	57
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	3 cut(s)	48, 288, 322
Sau96I	GGNCC	3 cut(s)	4, 121, 222
ScrFI	CCNGG	1 cut(s)	320
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	3 cut(s)	30, 57, 160
SfaNI	GCATC	3 cut(s)	130, 135, 142
SinI	GGWCC	2 cut(s)	4, 121
SseBI	AGGCCT	1 cut(s)	318
SsiI	CCGC	2 cut(s)	183, 228
SstI	GAGCTC	1 cut(s)	57
StuI	AGGCCT	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	318
StyI	CCWWGG	1 cut(s)	310
TaaI	ACNGT	1 cut(s)	13
TaqI	TCGA	5 cut(s)	23, 47, 51, 66, 281
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	2 cut(s)	13, 247
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	2 cut(s)	13, 247
TspDTI	ATGAA	1 cut(s)	180
TspRI	CASTG	1 cut(s)	112
Tth111I	GACNNNGTC	1 cut(s)	119
VpaK11BI	GGWCC	2 cut(s)	4, 121
XmnI	GAANNNNTTC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.