Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8339607.1

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 678

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8339607.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 493 bp

tgggaatgaaatagaatcaggtccatttgcacaatttgttggccctgccatggaaaaaattcaaaatgcaatttctaaggctggtcttgcgaacaaaattaaagtctccacagtggttcatcctatagtcctccaagaatcctcccctccatcaaaaggatcattcaagcaggattaccgagcctttcttgatcctgtcattgagaaggccggaggcagttctttgaaaattgttgtatcggaaatgggttggccttccgctggtggtgatggcgaagtgacaacaatagaaaatgcgagaatctacaactcacatgtgattaatcatgtcaagggtggtattccgaagaaacctgaaggtcctatagaaacttacatattttccatgttcaatgagaatgagaaaactggagcagagactgagaagaatttcgggctctttttaccaaccggagatccagtttatcctatcaatttcaacaaagatttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

163

Amino Acids

17.59

Weight (kDa)

5.65

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	259
AclWI	GGATC	3 cut(s)	167, 186, 450
AcsI	RAATTY	2 cut(s)	58, 428
AcuI	CTGAAG	1 cut(s)	376
AfiI	CCNNNNNNNGG	3 cut(s)	50, 156, 261
AflIII	ACRYGT	1 cut(s)	314
AgsI	TTSAA	5 cut(s)	63, 167, 227, 392, 479
Alw26I	GTCTC	2 cut(s)	110, 411
AlwI	GGATC	3 cut(s)	167, 186, 450
AlwNI	CAGNNNCTG	1 cut(s)	420
AoxI	GGCC	3 cut(s)	41, 208, 252
ApoI	RAATTY	2 cut(s)	58, 428
ArsI	GACNNNNNNTTYG	2 cut(s)	88, 120
AseI	ATTAAT	1 cut(s)	322
Asp700I	GAANNNNTTC	2 cut(s)	58, 429
AspS9I	GGNCC	3 cut(s)	21, 42, 360
AsuHPI	GGTGA	1 cut(s)	279
AvaII	GGWCC	2 cut(s)	21, 360
BanII	GRGCYC	1 cut(s)	439
BccI	CCATC	2 cut(s)	158, 264
BcoDI	GTCTC	2 cut(s)	110, 411
BfmI	CTRYAG	2 cut(s)	124, 364
Bme18I	GGWCC	2 cut(s)	21, 360
BmgT120I	GGNCC	3 cut(s)	21, 42, 360
BpmI	CTGGAG	1 cut(s)	430
BsaJI	CCNNGG	1 cut(s)	49
BsaWI	WCCGGW	1 cut(s)	450
BsaXI	ACNNNNNCTCC	2 cut(s)	445, 475
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 156, 261
Bse1I	ACTGG	2 cut(s)	413, 459
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	1 cut(s)	119
BseLI	CCNNNNNNNGG	3 cut(s)	50, 156, 261
BseMII	CTCAG	1 cut(s)	412
BseNI	ACTGG	2 cut(s)	413, 459
BshFI	GGCC	3 cut(s)	43, 210, 254
BsiSI	CCGG	2 cut(s)	211, 451
BslI	CCNNNNNNNGG	3 cut(s)	50, 156, 261
BsmAI	GTCTC	2 cut(s)	110, 411
BsnI	GGCC	3 cut(s)	43, 210, 254
Bsp1286I	GDGCHC	1 cut(s)	439
Bsp143I	GATC	3 cut(s)	159, 191, 455
Bsp19I	CCATGG	1 cut(s)	49
BspACI	CCGC	1 cut(s)	259
BspANI	GGCC	3 cut(s)	43, 210, 254
BspCNI	CTCAG	1 cut(s)	413
BspPI	GGATC	3 cut(s)	167, 186, 450
BsrI	ACTGG	2 cut(s)	413, 459
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	3 cut(s)	159, 191, 455
BssT1I	CCWWGG	1 cut(s)	49
Bst4CI	ACNGT	1 cut(s)	113
BstDEI	CTNAG	2 cut(s)	76, 421
BstDSI	CCRYGG	1 cut(s)	49
BstF5I	GGATG	1 cut(s)	119
BstKTI	GATC	3 cut(s)	162, 194, 458
BstMAI	GTCTC	2 cut(s)	110, 411
BstMBI	GATC	3 cut(s)	159, 191, 455
BstMWI	GCNNNNNNNGC	1 cut(s)	87
BstNSI	RCATGY	1 cut(s)	318
BstSFI	CTRYAG	2 cut(s)	124, 364
BstX2I	RGATCY	1 cut(s)	455
BstYI	RGATCY	1 cut(s)	455
BsuRI	GGCC	3 cut(s)	43, 210, 254
BtgI	CCRYGG	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	119
BtsIMutI	CAGTG	1 cut(s)	118
CaiI	CAGNNNCTG	1 cut(s)	420
Cfr13I	GGNCC	3 cut(s)	21, 42, 360
CviAII	CATG	4 cut(s)	50, 315, 327, 386
CviJI	RGCY	6 cut(s)	43, 81, 183, 210, 254, 437
CviKI_1	RGCY	6 cut(s)	43, 81, 183, 210, 254, 437
DdeI	CTNAG	2 cut(s)	76, 421
DpnI	GATC	3 cut(s)	161, 193, 457
DpnII	GATC	3 cut(s)	159, 191, 455
Eco130I	CCWWGG	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	439
Eco47I	GGWCC	2 cut(s)	21, 360
Eco57I	CTGAAG	1 cut(s)	376
EcoO109I	RGGNCCY	1 cut(s)	360
EcoT14I	CCWWGG	1 cut(s)	49
EcoT38I	GRGCYC	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	49
FaeI	CATG	4 cut(s)	53, 318, 330, 389
FaiI	YATR	8 cut(s)	51, 126, 316, 328, 366, 378, 387, 491
FatI	CATG	4 cut(s)	49, 314, 326, 385
FokI	GGATG	1 cut(s)	106
FriOI	GRGCYC	1 cut(s)	439
GsuI	CTGGAG	1 cut(s)	430
HaeIII	GGCC	3 cut(s)	43, 210, 254
HapII	CCGG	2 cut(s)	211, 451
Hin1II	CATG	4 cut(s)	53, 318, 330, 389
HinfI	GANTC	3 cut(s)	15, 138, 301
HpaII	CCGG	2 cut(s)	211, 451
HphI	GGTGA	1 cut(s)	279
Hpy188I	TCNGA	2 cut(s)	242, 346
Hpy188III	TCNNGA	1 cut(s)	189
HpyAV	CCTTC	3 cut(s)	200, 265, 351
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4V	TGCA	2 cut(s)	30, 69
HpyF10VI	GCNNNNNNNGC	1 cut(s)	87
HpyF3I	CTNAG	2 cut(s)	76, 421
Hsp92II	CATG	4 cut(s)	53, 318, 330, 389
Kzo9I	GATC	3 cut(s)	159, 191, 455
LmnI	GCTCC	1 cut(s)	411
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	3 cut(s)	161, 193, 457
MboI	GATC	3 cut(s)	159, 191, 455
MboII	GAAGA	2 cut(s)	359, 437
MflI	RGATCY	1 cut(s)	455
MhlI	GDGCHC	1 cut(s)	439
MluCI	AATT	7 cut(s)	33, 58, 70, 97, 229, 428, 473
MnlI	CCTC	4 cut(s)	141, 152, 157, 207
MroXI	GAANNNNTTC	2 cut(s)	58, 429
MseI	TTAA	2 cut(s)	100, 322
MspA1I	CMGCKG	1 cut(s)	261
MspI	CCGG	2 cut(s)	211, 451
MwoI	GCNNNNNNNGC	1 cut(s)	87
NcoI	CCATGG	1 cut(s)	49
NdeII	GATC	3 cut(s)	159, 191, 455
NlaIII	CATG	4 cut(s)	53, 318, 330, 389
NmuCI	GTSAC	1 cut(s)	278
NspI	RCATGY	1 cut(s)	318
PciI	ACATGT	1 cut(s)	314
PdmI	GAANNNNTTC	2 cut(s)	58, 429
PfeI	GAWTC	3 cut(s)	15, 138, 301
PpuMI	RGGWCCY	1 cut(s)	360
PscI	ACATGT	1 cut(s)	314
PshBI	ATTAAT	1 cut(s)	322
Psp5II	RGGWCCY	1 cut(s)	360
PspPI	GGNCC	3 cut(s)	21, 42, 360
PspPPI	RGGWCCY	1 cut(s)	360
PstNI	CAGNNNCTG	1 cut(s)	420
PsuI	RGATCY	1 cut(s)	455
SaqAI	TTAA	2 cut(s)	100, 322
Sau3AI	GATC	3 cut(s)	159, 191, 455
Sau96I	GGNCC	3 cut(s)	21, 42, 360
SduI	GDGCHC	1 cut(s)	439
SetI	ASST	3 cut(s)	23, 356, 362
SfcI	CTRYAG	2 cut(s)	124, 364
SinI	GGWCC	2 cut(s)	21, 360
Sse9I	AATT	7 cut(s)	33, 58, 70, 97, 229, 428, 473
SsiI	CCGC	1 cut(s)	259
StyI	CCWWGG	1 cut(s)	49
TaaI	ACNGT	1 cut(s)	113
TasI	AATT	7 cut(s)	33, 58, 70, 97, 229, 428, 473
TfiI	GAWTC	3 cut(s)	15, 138, 301
Tru1I	TTAA	2 cut(s)	100, 322
Tru9I	TTAA	2 cut(s)	100, 322
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	2 cut(s)	22, 108
TspRI	CASTG	1 cut(s)	118
VpaK11BI	GGWCC	2 cut(s)	21, 360
VspI	ATTAAT	1 cut(s)	322
XapI	RAATTY	2 cut(s)	58, 428
XceI	RCATGY	1 cut(s)	318
XmnI	GAANNNNTTC	2 cut(s)	58, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.