Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Reverse (-)

30415483 .. 30415929

Gene Structure 447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44875

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTACCCACACTTTAGTTACATTGACAACCGAGAGATTAACCTTCAATATGCTCTTTTCACATATCCATCAGTTCTGGTTCAAGATGGACAATTTGGCTACAAAAACTTGTTTGATGCACTTCTGGATGCACATTACTCCGCTTTAGAGAAGGCCGGAGGCGGTTCTTTGAAAATTGTTGTATCGGAGACGGGTTGGCCTTCCGCTAGTGGTGATGGCGAAGTGACAACAATAGAGAATGCGAGAATCTACAACTCACATGTGATTAATCATGCCAGGGGTGGTACTCCGAAGAAACCTGAAGGTCCTATAGAAACATACATATTTGCCATGTTCAATGAGAATGAGAAAACTGGAGCAGAGACTAAGAAGATTTCGGGCTCTTTTTACCAACCGGAGATCCTGTTTATCCCATCAATTTCAACTAAGATTTTTCAAGGATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

148

Amino Acids

16.42

Weight (kDa)

5.51

Isoelectric Point (pI)

35.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	1 - 129	5.7e-37	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	141, 162, 204
AclWI	GGATC	1 cut(s)	394
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	2 cut(s)	5, 286
AflIII	ACRYGT	1 cut(s)	259
AgsI	TTSAA	6 cut(s)	47, 83, 172, 337, 423, 437
AjnI	CCWGG	1 cut(s)	275
Alw26I	GTCTC	2 cut(s)	182, 356
AlwI	GGATC	1 cut(s)	394
AoxI	GGCC	2 cut(s)	153, 197
AseI	ATTAAT	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	305
AsuHPI	GGTGA	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	383
BccI	CCATC	4 cut(s)	76, 80, 209, 421
BciT130I	CCWGG	1 cut(s)	277
BcoDI	GTCTC	2 cut(s)	182, 356
BfaI	CTAG	1 cut(s)	207
BfmI	CTRYAG	1 cut(s)	309
Bme1390I	CCNGG	1 cut(s)	277
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	305
BmrFI	CCNGG	1 cut(s)	277
BmsI	GCATC	2 cut(s)	106, 118
BpmI	CTGGAG	1 cut(s)	375
BsaJI	CCNNGG	1 cut(s)	276
BsaWI	WCCGGW	1 cut(s)	394
BsaXI	ACNNNNNCTCC	2 cut(s)	389, 419
Bse1I	ACTGG	1 cut(s)	358
BseBI	CCWGG	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	1 cut(s)	133
BseNI	ACTGG	1 cut(s)	358
BshFI	GGCC	2 cut(s)	155, 199
BsiSI	CCGG	2 cut(s)	156, 395
BsmAI	GTCTC	2 cut(s)	182, 356
BsmBI	CGTCTC	1 cut(s)	182
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	2 cut(s)	155, 199
Bsp1286I	GDGCHC	1 cut(s)	383
Bsp143I	GATC	1 cut(s)	399
BspACI	CCGC	3 cut(s)	141, 162, 204
BspANI	GGCC	2 cut(s)	155, 199
BspPI	GGATC	1 cut(s)	394
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	1 cut(s)	399
Bst2UI	CCWGG	1 cut(s)	277
BstDEI	CTNAG	2 cut(s)	366, 426
BstF5I	GGATG	1 cut(s)	133
BstKTI	GATC	1 cut(s)	402
BstMAI	GTCTC	2 cut(s)	182, 356
BstMBI	GATC	1 cut(s)	399
BstNI	CCWGG	1 cut(s)	277
BstNSI	RCATGY	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	275
BstSFI	CTRYAG	1 cut(s)	309
BstX2I	RGATCY	1 cut(s)	399
BstYI	RGATCY	1 cut(s)	399
BsuRI	GGCC	2 cut(s)	155, 199
BtsCI	GGATG	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	305
Csp6I	GTAC	2 cut(s)	4, 285
CviAII	CATG	3 cut(s)	260, 272, 331
CviJI	RGCY	4 cut(s)	99, 155, 199, 381
CviKI_1	RGCY	4 cut(s)	99, 155, 199, 381
CviQI	GTAC	2 cut(s)	4, 285
DdeI	CTNAG	2 cut(s)	366, 426
DpnI	GATC	1 cut(s)	401
DpnII	GATC	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	275
EcoT38I	GRGCYC	1 cut(s)	383
Esp3I	CGTCTC	1 cut(s)	182
FaeI	CATG	3 cut(s)	263, 275, 334
FaiI	YATR	9 cut(s)	51, 64, 261, 273, 311, 319, 323, 332, 445
FatI	CATG	3 cut(s)	259, 271, 330
FokI	GGATG	1 cut(s)	140
FriOI	GRGCYC	1 cut(s)	383
FspBI	CTAG	1 cut(s)	207
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	2 cut(s)	155, 199
HapII	CCGG	2 cut(s)	156, 395
Hin1II	CATG	3 cut(s)	263, 275, 334
HinfI	GANTC	1 cut(s)	246
HpaII	CCGG	2 cut(s)	156, 395
HphI	GGTGA	1 cut(s)	224
Hpy188I	TCNGA	2 cut(s)	187, 291
Hpy188III	TCNNGA	2 cut(s)	83, 125
HpyAV	CCTTC	4 cut(s)	53, 145, 210, 296
HpyCH4V	TGCA	2 cut(s)	119, 131
HpyF3I	CTNAG	2 cut(s)	366, 426
Hsp92II	CATG	3 cut(s)	263, 275, 334
Kzo9I	GATC	1 cut(s)	399
LmnI	GCTCC	1 cut(s)	356
LpnPI	CCDG	9 cut(s)	62, 110, 169, 262, 289, 312, 339, 408, 416
LweI	GCATC	2 cut(s)	106, 118
MaeI	CTAG	1 cut(s)	207
MaeIII	GTNAC	2 cut(s)	17, 223
MalI	GATC	1 cut(s)	401
MboI	GATC	1 cut(s)	399
MboII	GAAGA	2 cut(s)	304, 382
MflI	RGATCY	1 cut(s)	399
MhlI	GDGCHC	1 cut(s)	383
MluCI	AATT	3 cut(s)	92, 174, 417
MnlI	CCTC	1 cut(s)	152
MseI	TTAA	2 cut(s)	39, 267
MspI	CCGG	2 cut(s)	156, 395
MspR9I	CCNGG	1 cut(s)	277
Mva1269I	GAATGC	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	277
NdeII	GATC	1 cut(s)	399
NlaIII	CATG	3 cut(s)	263, 275, 334
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	1 cut(s)	263
PciI	ACATGT	1 cut(s)	259
PctI	GAATGC	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	246
PpuMI	RGGWCCY	1 cut(s)	305
PscI	ACATGT	1 cut(s)	259
PshBI	ATTAAT	1 cut(s)	267
Psp5II	RGGWCCY	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	275
PspPI	GGNCC	1 cut(s)	305
PspPPI	RGGWCCY	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	399
RsaI	GTAC	2 cut(s)	5, 286
RsaNI	GTAC	2 cut(s)	4, 285
SaqAI	TTAA	2 cut(s)	39, 267
Sau3AI	GATC	1 cut(s)	399
Sau96I	GGNCC	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	277
SduI	GDGCHC	1 cut(s)	383
SetI	ASST	3 cut(s)	45, 301, 307
SfaNI	GCATC	2 cut(s)	106, 118
SfcI	CTRYAG	1 cut(s)	309
SinI	GGWCC	1 cut(s)	305
Sse9I	AATT	3 cut(s)	92, 174, 417
SsiI	CCGC	3 cut(s)	141, 162, 204
SspMI	CTAG	1 cut(s)	207
StyD4I	CCNGG	1 cut(s)	275
TasI	AATT	3 cut(s)	92, 174, 417
TfiI	GAWTC	1 cut(s)	246
Tru1I	TTAA	2 cut(s)	39, 267
Tru9I	TTAA	2 cut(s)	39, 267
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	305
VspI	ATTAAT	1 cut(s)	267
XceI	RCATGY	1 cut(s)	263
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.