Rh3AG259200

Glucan endo-1,3-beta-glucosidase, basic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000485
Physical Location & Seq
Forward (+)
28775920 .. 28780555
4636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG259200.1

Sequence Viewer

Length: 1020 bp
ATGTACTTCAAGTTACGGAATTCGCAATCACTAAATAGTATATCTTTTATTGAATCTGATGCAGGTTCCAAGATTGGTGTTTGTTATGGAACCATGGGAAACGACTTACCGCCAGCACAGGAAGTAATATCTATGTTCGACCAGTATAGAATTCAGAAAATCCGTCTCTATGATCCTAACCAAGGAGCTCTCCAAGCCCTTAGAGGCTCCAACATCGAGGTCATGCTTGGTGTTGAAAATGAACGCCTTCAAGACATTTCTTCTAGCCAAGACAAGGCGAATTCCTGGGTCCAAAGTAATGTCATAAACTATGGCAATGTCAATTTCAAATACATTGTTGTTGGAAACGAAATAGATCCTACAGGTCCACAAGCATCATTTGTTGCCCCTGCAATGGAAAACATTCAAAAAGCAATTACTTCGGAGAATCTTGCCAGTAAAATCAAAGTCTCCACTGCCATTTCCACTGCCGTCCTCAAAGAACCCTCTTACCCTCCATCAAACGGATCATTCCGTATCGACCATTTGCCATTTCTTAATCCCATCATCGCCTTCTTAGCACGCAACCAATCTCCACTGCTTGTTCATATATACCCTTATTTTGCTTACAGTCAAAACCGTCAGATTAATATCGAGTATGCTCTTTTTACATCTCCATCACCTGTAGTGCATGATGGCCAGCTTGGGTATCAAAACCTGTTTGATGCTATTCTCGATACAGTTTACTCGGCACTAGAGAGAGCTGGCAGCGGTTCCTTGGGAATCGTTGTATCGGAGTCTGGTTGGCCCTCTTTCGGTGGGGATGGAGAAGTGACTACAATTGAGAATGCAAGAATTTACAACTCCAATTTGATCAATCATGTGAAGGCTAATGGGACTCCAAAGAAACCTGGAAGCACTATAGAGGCTTATGTGTTTGCCATGTTTAATGAGAATCAAAAGAAAGGTCCAGAGATCGAGAGACATTGGGGGCTCTTCTACCCAACCAAACAGCCTAAATATCACATTGATTTCAATTAA

Protein Analysis

339

Amino Acids

37.6

Weight (kDa)

5.9

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 25 - 338 8.2e-110 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000485)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16260 AT4G16260
fragaria_vesca FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis pycom12g07050 pycom12g07100
rosa_chinensis RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 53
AciI CCGC 2 cut(s) 110, 750
AclWI GGATC 3 cut(s) 167, 350, 514
AcoI YGGCCR 1 cut(s) 676
AcsI RAATTY 4 cut(s) 19, 150, 280, 834
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 5 cut(s) 182, 274, 394, 503, 794
AgsI TTSAA 7 cut(s) 10, 53, 236, 251, 328, 407, 1015
AjnI CCWGG 2 cut(s) 284, 889
AluBI AGCT 3 cut(s) 188, 682, 743
AluI AGCT 3 cut(s) 188, 682, 743
Alw21I GWGCWC 1 cut(s) 190
Alw26I GTCTC 3 cut(s) 170, 454, 955
AlwI GGATC 3 cut(s) 167, 350, 514
AoxI GGCC 2 cut(s) 676, 785
ApeKI GCWGC 1 cut(s) 747
ApoI RAATTY 4 cut(s) 19, 150, 280, 834
ArsI GACNNNNNNTTYG 2 cut(s) 931, 963
AseI ATTAAT 1 cut(s) 627
Asp700I GAANNNNTTC 2 cut(s) 246, 402
AspS9I GGNCC 4 cut(s) 289, 365, 786, 947
AsuHPI GGTGA 1 cut(s) 651
AvaII GGWCC 3 cut(s) 289, 365, 947
BalI TGGCCA 1 cut(s) 678
BanII GRGCYC 2 cut(s) 190, 975
Bbv12I GWGCWC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 759
BccI CCATC 5 cut(s) 505, 551, 664, 668, 797
BceAI ACGGC 1 cut(s) 455
BcgI CGANNNNNNTGC 2 cut(s) 402, 436
BciT130I CCWGG 2 cut(s) 286, 891
BclI TGATCA 1 cut(s) 852
BcoDI GTCTC 3 cut(s) 170, 454, 955
BfaI CTAG 2 cut(s) 264, 734
BfmI CTRYAG 3 cut(s) 360, 663, 900
BfuAI ACCTGC 1 cut(s) 53
BisI GCNGC 1 cut(s) 748
BlsI GCNGC 1 cut(s) 749
Bme1390I CCNGG 2 cut(s) 286, 891
Bme18I GGWCC 3 cut(s) 289, 365, 947
BmgT120I GGNCC 4 cut(s) 289, 365, 786, 947
BmiI GGNNCC 5 cut(s) 67, 91, 208, 290, 754
BmrFI CCNGG 2 cut(s) 286, 891
BmsI GCATC 3 cut(s) 49, 383, 694
BsaBI GATNNNNATC 1 cut(s) 629
BsaJI CCNNGG 4 cut(s) 93, 181, 285, 756
Bsc4I CCNNNNNNNGG 5 cut(s) 182, 274, 394, 503, 794
Bse1I ACTGG 2 cut(s) 142, 435
Bse3DI GCAATG 2 cut(s) 322, 399
Bse8I GATNNNNATC 1 cut(s) 629
BseBI CCWGG 2 cut(s) 286, 891
BseDI CCNNGG 4 cut(s) 93, 181, 285, 756
BseGI GGATG 1 cut(s) 808
BseJI GATNNNNATC 1 cut(s) 629
BseLI CCNNNNNNNGG 5 cut(s) 182, 274, 394, 503, 794
BseMI GCAATG 2 cut(s) 322, 399
BseNI ACTGG 2 cut(s) 142, 435
BseXI GCAGC 1 cut(s) 759
BshFI GGCC 2 cut(s) 678, 787
BsiHKAI GWGCWC 1 cut(s) 190
BslFI GGGAC 1 cut(s) 889
BslI CCNNNNNNNGG 5 cut(s) 182, 274, 394, 503, 794
BsmAI GTCTC 3 cut(s) 170, 454, 955
BsmBI CGTCTC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 889
BsmI GAATGC 1 cut(s) 832
BsnI GGCC 2 cut(s) 678, 787
Bsp1286I GDGCHC 2 cut(s) 190, 975
Bsp143I GATC 5 cut(s) 172, 355, 506, 852, 954
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 2 cut(s) 110, 750
BspANI GGCC 2 cut(s) 678, 787
BspLI GGNNCC 5 cut(s) 67, 91, 208, 290, 754
BspMI ACCTGC 1 cut(s) 53
BspPI GGATC 3 cut(s) 167, 350, 514
BspQI GCTCTTC 1 cut(s) 980
BsrDI GCAATG 2 cut(s) 322, 399
BsrI ACTGG 2 cut(s) 142, 435
BssECI CCNNGG 4 cut(s) 93, 181, 285, 756
BssMI GATC 5 cut(s) 172, 355, 506, 852, 954
BssT1I CCWWGG 3 cut(s) 93, 181, 756
Bst2UI CCWGG 2 cut(s) 286, 891
Bst4CI ACNGT 3 cut(s) 611, 620, 721
Bst6I CTCTTC 1 cut(s) 980
BstC8I GCNNGC 4 cut(s) 114, 562, 680, 745
BstDEI CTNAG 2 cut(s) 200, 556
BstDSI CCRYGG 1 cut(s) 93
BstENI CCTNNNNNAGG 1 cut(s) 180
BstF5I GGATG 1 cut(s) 808
BstKTI GATC 5 cut(s) 175, 358, 509, 855, 957
BstMAI GTCTC 3 cut(s) 170, 454, 955
BstMBI GATC 5 cut(s) 172, 355, 506, 852, 954
BstMWI GCNNNNNNNGC 2 cut(s) 194, 557
BstNI CCWGG 2 cut(s) 286, 891
BstSCI CCNGG 2 cut(s) 284, 889
BstSFI CTRYAG 3 cut(s) 360, 663, 900
BstV1I GCAGC 1 cut(s) 759
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
BsuRI GGCC 2 cut(s) 678, 787
BtgI CCRYGG 1 cut(s) 93
BtgZI GCGATG 1 cut(s) 532
BtsCI GGATG 1 cut(s) 808
BtsI GCAGTG 3 cut(s) 453, 465, 575
BtsIMutI CAGTG 3 cut(s) 453, 465, 575
BveI ACCTGC 1 cut(s) 53
Cac8I GCNNGC 4 cut(s) 114, 562, 680, 745
Cfr13I GGNCC 4 cut(s) 289, 365, 786, 947
Csp6I GTAC 1 cut(s) 4
CviAII CATG 5 cut(s) 94, 223, 671, 860, 922
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 2 cut(s) 200, 556
DpnI GATC 5 cut(s) 174, 357, 508, 854, 956
DpnII GATC 5 cut(s) 172, 355, 506, 852, 954
EaeI YGGCCR 1 cut(s) 676
Eam1104I CTCTTC 1 cut(s) 980
EarI CTCTTC 1 cut(s) 980
Ecl136II GAGCTC 1 cut(s) 188
Eco130I CCWWGG 3 cut(s) 93, 181, 756
Eco24I GRGCYC 2 cut(s) 190, 975
Eco47I GGWCC 3 cut(s) 289, 365, 947
Eco53kI GAGCTC 1 cut(s) 188
EcoICRI GAGCTC 1 cut(s) 188
EcoNI CCTNNNNNAGG 1 cut(s) 180
EcoRI GAATTC 3 cut(s) 19, 150, 280
EcoRII CCWGG 2 cut(s) 284, 889
EcoT14I CCWWGG 3 cut(s) 93, 181, 756
EcoT38I GRGCYC 2 cut(s) 190, 975
ErhI CCWWGG 3 cut(s) 93, 181, 756
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 5 cut(s) 97, 226, 674, 863, 925
FaqI GGGAC 1 cut(s) 889
FatI CATG 5 cut(s) 93, 222, 670, 859, 921
FbaI TGATCA 1 cut(s) 852
Fnu4HI GCNGC 1 cut(s) 748
FokI GGATG 1 cut(s) 815
FriOI GRGCYC 2 cut(s) 190, 975
Fsp4HI GCNGC 1 cut(s) 748
FspBI CTAG 2 cut(s) 264, 734
GluI GCNGC 1 cut(s) 748
HaeIII GGCC 2 cut(s) 678, 787
Hin1II CATG 5 cut(s) 97, 226, 674, 863, 925
HinfI GANTC 6 cut(s) 53, 427, 762, 776, 877, 934
HphI GGTGA 1 cut(s) 651
Hpy166II GTNNAC 2 cut(s) 368, 724
Hpy188I TCNGA 5 cut(s) 58, 156, 424, 624, 775
Hpy188III TCNNGA 4 cut(s) 251, 713, 950, 958
Hpy8I GTNNAC 2 cut(s) 368, 724
HpyAV CCTTC 3 cut(s) 257, 562, 859
HpyCH4III ACNGT 3 cut(s) 611, 620, 721
HpyCH4V TGCA 4 cut(s) 62, 392, 670, 830
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 557
HpyF3I CTNAG 2 cut(s) 200, 556
Hsp92II CATG 5 cut(s) 97, 226, 674, 863, 925
Ksp22I TGATCA 1 cut(s) 852
Kzo9I GATC 5 cut(s) 172, 355, 506, 852, 954
LguI GCTCTTC 1 cut(s) 980
LmnI GCTCC 2 cut(s) 185, 212
Lsp1109I GCAGC 1 cut(s) 759
LweI GCATC 3 cut(s) 49, 383, 694
MaeI CTAG 2 cut(s) 264, 734
MaeIII GTNAC 2 cut(s) 12, 811
MalI GATC 5 cut(s) 174, 357, 508, 854, 956
MboI GATC 5 cut(s) 172, 355, 506, 852, 954
MboII GAAGA 2 cut(s) 252, 967
MfeI CAATTG 1 cut(s) 819
MflI RGATCY 1 cut(s) 355
MhlI GDGCHC 2 cut(s) 190, 975
MlsI TGGCCA 1 cut(s) 678
MluCI AATT 9 cut(s) 19, 150, 280, 322, 414, 819, 834, 847, 1015
MluNI TGGCCA 1 cut(s) 678
MlyI GAGTC 2 cut(s) 785, 871
MmeI TCCRAC 2 cut(s) 234, 322
MnlI CCTC 7 cut(s) 197, 211, 485, 496, 504, 799, 898
Mox20I TGGCCA 1 cut(s) 678
MroXI GAANNNNTTC 2 cut(s) 246, 402
MscI TGGCCA 1 cut(s) 678
MseI TTAA 4 cut(s) 537, 627, 927, 1018
Msp20I TGGCCA 1 cut(s) 678
MspA1I CMGCKG 1 cut(s) 750
MspR9I CCNGG 2 cut(s) 286, 891
MunI CAATTG 1 cut(s) 819
Mva1269I GAATGC 1 cut(s) 832
MvaI CCWGG 2 cut(s) 286, 891
MwoI GCNNNNNNNGC 2 cut(s) 194, 557
NcoI CCATGG 1 cut(s) 93
NdeII GATC 5 cut(s) 172, 355, 506, 852, 954
NlaIII CATG 5 cut(s) 97, 226, 674, 863, 925
NlaIV GGNNCC 5 cut(s) 67, 91, 208, 290, 754
NmeAIII GCCGAG 1 cut(s) 707
NmuCI GTSAC 1 cut(s) 811
PciSI GCTCTTC 1 cut(s) 980
PctI GAATGC 1 cut(s) 832
PdmI GAANNNNTTC 2 cut(s) 246, 402
PfeI GAWTC 4 cut(s) 53, 427, 762, 934
PkrI GCNGC 1 cut(s) 749
PleI GAGTC 2 cut(s) 784, 871
PpsI GAGTC 2 cut(s) 784, 871
PshBI ATTAAT 1 cut(s) 627
Psp124BI GAGCTC 1 cut(s) 190
Psp6I CCWGG 2 cut(s) 284, 889
PspGI CCWGG 2 cut(s) 284, 889
PspN4I GGNNCC 5 cut(s) 67, 91, 208, 290, 754
PspPI GGNCC 4 cut(s) 289, 365, 786, 947
PsuI RGATCY 1 cut(s) 355
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SacI GAGCTC 1 cut(s) 190
SapI GCTCTTC 1 cut(s) 980
SaqAI TTAA 4 cut(s) 537, 627, 927, 1018
SatI GCNGC 1 cut(s) 748
Sau3AI GATC 5 cut(s) 172, 355, 506, 852, 954
Sau96I GGNCC 4 cut(s) 289, 365, 786, 947
SchI GAGTC 2 cut(s) 785, 871
ScrFI CCNGG 2 cut(s) 286, 891
SduI GDGCHC 2 cut(s) 190, 975
SfaNI GCATC 3 cut(s) 49, 383, 694
SfcI CTRYAG 3 cut(s) 360, 663, 900
SinI GGWCC 3 cut(s) 289, 365, 947
Sse9I AATT 9 cut(s) 19, 150, 280, 322, 414, 819, 834, 847, 1015
SsiI CCGC 2 cut(s) 110, 750
SspMI CTAG 2 cut(s) 264, 734
SstI GAGCTC 1 cut(s) 190
StyD4I CCNGG 2 cut(s) 284, 889
StyI CCWWGG 3 cut(s) 93, 181, 756
TaaI ACNGT 3 cut(s) 611, 620, 721
TaqI TCGA 6 cut(s) 138, 216, 519, 633, 714, 957
TasI AATT 9 cut(s) 19, 150, 280, 322, 414, 819, 834, 847, 1015
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 4 cut(s) 53, 427, 762, 934
Tru1I TTAA 4 cut(s) 537, 627, 927, 1018
Tru9I TTAA 4 cut(s) 537, 627, 927, 1018
TscAI CASTG 3 cut(s) 460, 472, 582
TseFI GTSAC 1 cut(s) 811
TseI GCWGC 1 cut(s) 747
Tsp45I GTSAC 1 cut(s) 811
TspDTI ATGAA 2 cut(s) 255, 575
TspGWI ACGGA 4 cut(s) 31, 152, 503, 519
TspRI CASTG 3 cut(s) 460, 472, 582
VpaK11BI GGWCC 3 cut(s) 289, 365, 947
VspI ATTAAT 1 cut(s) 627
XagI CCTNNNNNAGG 1 cut(s) 180
XapI RAATTY 4 cut(s) 19, 150, 280, 834
XmnI GAANNNNTTC 2 cut(s) 246, 402
XspI CTAG 2 cut(s) 264, 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.