Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001899.1

Orthogroup ID

OG0000485

Physical Location & Seq

Genomic Coordinates Forward (+)

51562 .. 52675

Gene Structure 1114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001899.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atggctacctttaccacaacaggtgcccaggttggtgtttgttatggaactgtcgcaaacaacttgccacccccacgagaagttatatcactttacaaccaatataacatcaaaaggatgcggctttatggtcctaaccatgatgctctcgaagctcttagaggctccaacattgagctcatgcttggtgtcgaaaacgaacgccttcgggatatttcttctaaccaagccagtgctgatgattgggtccaaaaaaatgttgtgacctatggaaatgtcaatttcaagtacattgcggttggaaatgaaatagatgctaaagggcaattagcaccatttgttggccctgccatggaaaaaattcacaatgcaatttcgagggctggtcttgcaaacaaaattaaagtctccacggccgttcatcctgtaattctccaagaatcttaccctccatcaaaaggatcattcaggcaggattaccgaccatttcttgatcctatcattggtttcctagtgggaaataaatctccattacttctaaatatgtacccatactttagtttcattcaaaaccgagcaaacattgaccttcgatatgctctttttacatctccgtcagtcgtggttcaagatggacaatctggctatcaaaatctgtttgatgcacttcttgatgcacattactccgctttagagaaggctgggggtggttctttgagaattgttgtatcggagactggttggccctctgctggtggtgatggtcaagtgacaacaaaggagaatgcgagaatttacaactcaaatgtgatcaagcatgtcaagggcggtactccaaagagacctggaggttccatagaaacttacatatttgccatgttcaatgagaatcaaaaacctggagacgagactgagaaaaatttcggcctcttttacccaagcaaaaatccggtttatcccataaatttcaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0008810 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

324

Amino Acids

35.7

Weight (kDa)

8.72

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16260 AT4G16260
fragaria_vesca	FvH4_4g19500 FvH4_5g06210 FvH4_6g24640 FvH4_6g24680 FvH4_6g37200 FvH4_6g37201 FvH4_6g37370
malus_domestica	MD12G1083900.v1.1 MD12G1084100.v1.1
prunus_persica	Prupe.1G121800_v2.0.a1 Prupe.7G051600_v2.0.a1 Prupe.7G052100_v2.0.a1
pyrus_communis	pycom12g07050 pycom12g07100
rosa_chinensis	RchiOBHm_Chr2g0149871 RchiOBHm_Chr2g0149881 RchiOBHm_Chr3g0484031 RchiOBHm_Chr3g0484041 RchiOBHm_Chr3g0484071 RchiOBHm_Chr3g0484141 RchiOBHm_Chr3g0484181 RchiOBHm_Chr3g0484211 RchiOBHm_Chr3g0484221 RchiOBHm_Chr3g0484251 RchiOBHm_Chr4g0424631 RchiOBHm_Chr7g0178181
rosa_laevigata	RLG00000007444 RLG00000007447 RLG00000020451 RLG00000020452 RLG00000023238 RLG00000023240 RLG00000023241 RLG00000023243
rosa_multiflora	Rmu_co8177358.1_g000001 Rmu_co8303623.1_g000001 Rmu_co8339607.1_g000001 Rmu_sc0000730.1_g000027 Rmu_sc0001899.1_g000006 Rmu_sc0001899.1_g000012 Rmu_sc0003477.1_g000003 Rmu_sc0003477.1_g000011 Rmu_sc0006371.1_g000005 Rmu_sc0007329.1_g000005 Rmu_sc0007855.1_g000006 Rmu_sc0017706.1_g000001 Rmu_ssc0000308.1_g000021 Rmu_ssc0000308.1_g000028
rosa_roxburghii	Rroxscaffold_2G00097590 Rroxscaffold_5G00366550 Rroxscaffold_6G00397840 Rroxscaffold_6G00397890
rosa_rugosa	Rorug02G0417000 Rorug02G0417000 Rorug03G0210200 Rorug03G0210400 Rorug04G0198700 Rorug06G0413900
rosa_samantha	Rh2AG476400 Rh2BG487900 Rh2BG488000 Rh2CG461800 Rh2DG496700 Rh2DG497100 Rh3AG259000 Rh3AG259200 Rh3BG295300 Rh3BG295500 Rh3BG295600 Rh3BG295900 Rh3CG292800 Rh3CG292900 Rh3CG293300 Rh3DG288600 Rh3DG289100 Rh3DG289300 Rh4AG255300 Rh4BG260800 Rh4CG272000 Rh4DG255500 Rh7AG013600
rosa_wichuraiana	Rw2G038830 Rw3G023320 Rw3G023360 Rw3G023370 Rw3G023380 Rw4G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	23
AccB7I	CCANNNNNTGG	1 cut(s)	341
AciI	CCGC	4 cut(s)	121, 296, 687, 828
AclWI	GGATC	2 cut(s)	469, 488
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	4 cut(s)	360, 792, 919, 964
AfaI	GTAC	3 cut(s)	290, 548, 832
AfiI	CCNNNNNNNGG	5 cut(s)	341, 352, 458, 503, 752
AgsI	TTSAA	5 cut(s)	286, 569, 629, 883, 970
AjnI	CCWGG	3 cut(s)	27, 844, 898
AluBI	AGCT	2 cut(s)	155, 178
AluI	AGCT	2 cut(s)	155, 178
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	5 cut(s)	412, 728, 835, 897, 902
AlwI	GGATC	2 cut(s)	469, 488
AoxI	GGCC	4 cut(s)	343, 414, 743, 925
ApoI	RAATTY	4 cut(s)	360, 792, 919, 964
ArsI	GACNNNNNNTTYG	2 cut(s)	390, 422
Asp700I	GAANNNNTTC	3 cut(s)	204, 360, 920
AspS9I	GGNCC	4 cut(s)	131, 247, 344, 744
AsuHPI	GGTGA	1 cut(s)	770
AvaII	GGWCC	2 cut(s)	131, 247
BaeGI	GKGCMC	1 cut(s)	28
BanI	GGYRCC	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	180
BauI	CACGAG	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	180
BccI	CCATC	3 cut(s)	460, 626, 755
BceAI	ACGGC	2 cut(s)	401, 429
BciT130I	CCWGG	3 cut(s)	29, 846, 900
BclI	TGATCA	1 cut(s)	810
BcoDI	GTCTC	5 cut(s)	412, 728, 835, 897, 902
BfaI	CTAG	1 cut(s)	512
BisI	GCNGC	1 cut(s)	122
BlsI	GCNGC	1 cut(s)	123
Bme1390I	CCNGG	3 cut(s)	29, 846, 900
Bme18I	GGWCC	2 cut(s)	131, 247
BmgT120I	GGNCC	4 cut(s)	131, 247, 344, 744
BmiI	GGNNCC	4 cut(s)	25, 166, 248, 853
BmrFI	CCNGG	3 cut(s)	29, 846, 900
BmsI	GCATC	5 cut(s)	108, 133, 304, 652, 664
BpmI	CTGGAG	2 cut(s)	867, 921
BsaI	GGTCTC	1 cut(s)	835
BsaJI	CCNNGG	3 cut(s)	27, 351, 411
BsaWI	WCCGGW	1 cut(s)	949
Bsc4I	CCNNNNNNNGG	5 cut(s)	341, 352, 458, 503, 752
Bse1I	ACTGG	2 cut(s)	231, 742
Bse3DI	GCAATG	1 cut(s)	291
BseBI	CCWGG	3 cut(s)	29, 846, 900
BseDI	CCNNGG	3 cut(s)	27, 351, 411
BseGI	GGATG	2 cut(s)	123, 421
BseLI	CCNNNNNNNGG	5 cut(s)	341, 352, 458, 503, 752
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	1 cut(s)	903
BseNI	ACTGG	2 cut(s)	231, 742
BseSI	GKGCMC	1 cut(s)	28
BseX3I	CGGCCG	1 cut(s)	414
BseYI	CCCAGC	1 cut(s)	701
Bsh1285I	CGRYCG	1 cut(s)	417
BshFI	GGCC	4 cut(s)	345, 416, 745, 927
BshNI	GGYRCC	1 cut(s)	23
BsiEI	CGRYCG	1 cut(s)	417
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	950
BslI	CCNNNNNNNGG	5 cut(s)	341, 352, 458, 503, 752
BsmAI	GTCTC	5 cut(s)	412, 728, 835, 897, 902
BsmBI	CGTCTC	1 cut(s)	897
BsmI	GAATGC	1 cut(s)	790
BsnI	GGCC	4 cut(s)	345, 416, 745, 927
Bso31I	GGTCTC	1 cut(s)	835
Bsp1286I	GDGCHC	2 cut(s)	28, 180
Bsp143I	GATC	3 cut(s)	461, 493, 810
Bsp19I	CCATGG	1 cut(s)	351
BspACI	CCGC	4 cut(s)	121, 296, 687, 828
BspANI	GGCC	4 cut(s)	345, 416, 745, 927
BspCNI	CTCAG	1 cut(s)	904
BspLI	GGNNCC	4 cut(s)	25, 166, 248, 853
BspPI	GGATC	2 cut(s)	469, 488
BspT107I	GGYRCC	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	835
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	2 cut(s)	231, 742
BssECI	CCNNGG	3 cut(s)	27, 351, 411
BssMI	GATC	3 cut(s)	461, 493, 810
BssSI	CACGAG	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	351
Bst2BI	CACGAG	1 cut(s)	75
Bst2UI	CCWGG	3 cut(s)	29, 846, 900
Bst4CI	ACNGT	1 cut(s)	52
BstDEI	CTNAG	2 cut(s)	158, 912
BstDSI	CCRYGG	2 cut(s)	351, 411
BstF5I	GGATG	2 cut(s)	123, 421
BstKTI	GATC	3 cut(s)	464, 496, 813
BstMAI	GTCTC	5 cut(s)	412, 728, 835, 897, 902
BstMBI	GATC	3 cut(s)	461, 493, 810
BstMCI	CGRYCG	1 cut(s)	417
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 389
BstNI	CCWGG	3 cut(s)	29, 846, 900
BstNSI	RCATGY	1 cut(s)	821
BstSCI	CCNGG	3 cut(s)	27, 844, 898
BstSLI	GKGCMC	1 cut(s)	28
BstZI	CGGCCG	1 cut(s)	414
BsuRI	GGCC	4 cut(s)	345, 416, 745, 927
BtgI	CCRYGG	2 cut(s)	351, 411
BtsCI	GGATG	2 cut(s)	123, 421
BtsIMutI	CAGTG	1 cut(s)	238
Cfr13I	GGNCC	4 cut(s)	131, 247, 344, 744
Csp6I	GTAC	3 cut(s)	289, 547, 831
CviAII	CATG	5 cut(s)	140, 181, 352, 818, 877
CviQI	GTAC	3 cut(s)	289, 547, 831
DdeI	CTNAG	2 cut(s)	158, 912
DpnI	GATC	3 cut(s)	463, 495, 812
DpnII	GATC	3 cut(s)	461, 493, 810
EaeI	YGGCCR	1 cut(s)	414
EagI	CGGCCG	1 cut(s)	414
Ecl136II	GAGCTC	1 cut(s)	178
EclXI	CGGCCG	1 cut(s)	414
Eco130I	CCWWGG	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	180
Eco31I	GGTCTC	1 cut(s)	835
Eco47I	GGWCC	2 cut(s)	131, 247
Eco52I	CGGCCG	1 cut(s)	414
Eco53kI	GAGCTC	1 cut(s)	178
EcoICRI	GAGCTC	1 cut(s)	178
EcoRII	CCWGG	3 cut(s)	27, 844, 898
EcoT14I	CCWWGG	1 cut(s)	351
EcoT38I	GRGCYC	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	351
Esp3I	CGTCTC	1 cut(s)	897
FaeI	CATG	5 cut(s)	143, 184, 355, 821, 880
FatI	CATG	5 cut(s)	139, 180, 351, 817, 876
FbaI	TGATCA	1 cut(s)	810
Fnu4HI	GCNGC	1 cut(s)	122
FokI	GGATG	2 cut(s)	130, 408
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	1 cut(s)	122
FspBI	CTAG	1 cut(s)	512
GluI	GCNGC	1 cut(s)	122
GsaI	CCCAGC	1 cut(s)	705
GsuI	CTGGAG	2 cut(s)	867, 921
HaeIII	GGCC	4 cut(s)	345, 416, 745, 927
HapII	CCGG	1 cut(s)	950
Hin1II	CATG	5 cut(s)	143, 184, 355, 821, 880
HinfI	GANTC	2 cut(s)	440, 889
HpaII	CCGG	1 cut(s)	950
HphI	GGTGA	1 cut(s)	770
Hpy188I	TCNGA	1 cut(s)	733
Hpy188III	TCNNGA	5 cut(s)	149, 209, 491, 629, 671
HpyAV	CCTTC	3 cut(s)	215, 599, 691
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	4 cut(s)	371, 392, 665, 677
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 389
HpyF3I	CTNAG	2 cut(s)	158, 912
Hsp92II	CATG	5 cut(s)	143, 184, 355, 821, 880
Ksp22I	TGATCA	1 cut(s)	810
Kzo9I	GATC	3 cut(s)	461, 493, 810
LmnI	GCTCC	1 cut(s)	170
LweI	GCATC	5 cut(s)	108, 133, 304, 652, 664
MaeI	CTAG	1 cut(s)	512
MaeIII	GTNAC	2 cut(s)	262, 769
MalI	GATC	3 cut(s)	463, 495, 812
MboI	GATC	3 cut(s)	461, 493, 810
MboII	GAAGA	1 cut(s)	210
MhlI	GDGCHC	2 cut(s)	28, 180
MmeI	TCCRAC	2 cut(s)	192, 280
MnlI	CCTC	6 cut(s)	155, 372, 459, 757, 842, 938
MroXI	GAANNNNTTC	3 cut(s)	204, 360, 920
MseI	TTAA	1 cut(s)	402
MspI	CCGG	1 cut(s)	950
MspR9I	CCNGG	3 cut(s)	29, 846, 900
Mva1269I	GAATGC	1 cut(s)	790
MvaI	CCWGG	3 cut(s)	29, 846, 900
MwoI	GCNNNNNNNGC	2 cut(s)	152, 389
NcoI	CCATGG	1 cut(s)	351
NdeII	GATC	3 cut(s)	461, 493, 810
NlaIII	CATG	5 cut(s)	143, 184, 355, 821, 880
NlaIV	GGNNCC	4 cut(s)	25, 166, 248, 853
NmuCI	GTSAC	2 cut(s)	262, 769
NspI	RCATGY	1 cut(s)	821
PctI	GAATGC	1 cut(s)	790
PdmI	GAANNNNTTC	3 cut(s)	204, 360, 920
PfeI	GAWTC	2 cut(s)	440, 889
PflMI	CCANNNNNTGG	1 cut(s)	341
PkrI	GCNGC	1 cut(s)	123
Psp124BI	GAGCTC	1 cut(s)	180
Psp6I	CCWGG	3 cut(s)	27, 844, 898
PspFI	CCCAGC	1 cut(s)	701
PspGI	CCWGG	3 cut(s)	27, 844, 898
PspN4I	GGNNCC	4 cut(s)	25, 166, 248, 853
PspPI	GGNCC	4 cut(s)	131, 247, 344, 744
RsaI	GTAC	3 cut(s)	290, 548, 832
RsaNI	GTAC	3 cut(s)	289, 547, 831
SacI	GAGCTC	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	1 cut(s)	122
Sau3AI	GATC	3 cut(s)	461, 493, 810
Sau96I	GGNCC	4 cut(s)	131, 247, 344, 744
ScrFI	CCNGG	3 cut(s)	29, 846, 900
SduI	GDGCHC	2 cut(s)	28, 180
SfaNI	GCATC	5 cut(s)	108, 133, 304, 652, 664
SinI	GGWCC	2 cut(s)	131, 247
SsiI	CCGC	4 cut(s)	121, 296, 687, 828
SspMI	CTAG	1 cut(s)	512
SstI	GAGCTC	1 cut(s)	180
StyD4I	CCNGG	3 cut(s)	27, 844, 898
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	52
TaqI	TCGA	4 cut(s)	150, 192, 377, 592
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	1 cut(s)	124
TfiI	GAWTC	2 cut(s)	440, 889
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	2 cut(s)	262, 769
Tsp45I	GTSAC	2 cut(s)	262, 769
TspDTI	ATGAA	3 cut(s)	321, 410, 553
TspGWI	ACGGA	1 cut(s)	603
TspRI	CASTG	1 cut(s)	238
Van91I	CCANNNNNTGG	1 cut(s)	341
VpaK11BI	GGWCC	2 cut(s)	131, 247
XapI	RAATTY	4 cut(s)	360, 792, 919, 964
XceI	RCATGY	1 cut(s)	821
XmnI	GAANNNNTTC	3 cut(s)	204, 360, 920
XspI	CTAG	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.