AT5G44120

seed storage protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
17756238 .. 17758336
2099 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G44120.2

Sequence Viewer

Length: 858 bp
ATGAAGCCATTTTACTTAGCCGGAAACAACCCACAAGGTCAAGTATGGCTACAAGGACGAGAGCAACAGCCACAGAAGAACATTTTCAATGGATTTGGACCCGAGGTTATTGCTCAAGCTTTGAAGATCGATCTTCAGACAGCACAGCAACTTCAGAACCAAGATGACAACCGTGGAAACATTGTCCGAGTCCAAGGACCGTTCGGTGTCATTAGGCCGCCTTTGAGGGGCCAGAGACCTCAGGAGGAGGAAGAAGAAGAAGGACGACATGGACGACACGGTAATGGCTTAGAGGAGACCATCTGCAGCGCCAGGTGCACCGATAACCTCGATGACCCGTCTCGTGCTGACGTGTACAAGCCACAGCTCGGTTACATCAGCACTCTCAACAGTTACGATCTCCCCATCCTTCGCTTCATCCGTCTCTCAGCCCTCCGTGGATCTATCCGTCAAAACGCAATGGTGCTTCCACAGTGGAACGCAAACGCGAACGCTATTCTTTACGTGACAGACGGGGAAGCCCAAATCCAGATCGTAAACGACAATGGTAACAGAGTGTTTGACGGACAAGTCTCTCAAGGACAGCTCATAGCCGTACCACAAGGTTTCTCGGTGGTGAAACGCGCAACAAGCAACCGATTCCAGTGGGTTGAGTTCAAAACAAACGCTAACGCGCAAATCAACACTCTGGCGGGACGAACCTCAGTCTTGAGAGGTTTACCACTTGAAGTCATAACCAATGGGTTCCAAATCTCACCCGAAGAAGCAAGGAGGGTCAAGTTCAACACGCTCGAGACCACTTTGACTCACAGCAGTGGCCCAGCTAGCTACGGAAGGCCAAGGGTGGCTGCAGCTTAA

Protein Analysis

285

Amino Acids

31.65

Weight (kDa)

8.95

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 4 - 93 1.6e-11 Cupin
Cupin_1 PF00190 192 - 339 1.4e-42 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000311)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis pycom05g18380 pycom05g18390
rosa_chinensis RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 569
AccII CGCG 3 cut(s) 488, 624, 674
AciI CCGC 2 cut(s) 218, 692
AclWI GGATC 1 cut(s) 448
AcuI CTGAAG 2 cut(s) 119, 137
AfaI GTAC 2 cut(s) 356, 597
AfiI CCNNNNNNNGG 2 cut(s) 227, 368
AflIII ACRYGT 1 cut(s) 351
AgsI TTSAA 5 cut(s) 88, 124, 658, 728, 784
AjiI CACGTC 1 cut(s) 352
AjnI CCWGG 1 cut(s) 311
AleI CACNNNNGTG 1 cut(s) 813
AluBI AGCT 6 cut(s) 119, 367, 586, 824, 828, 854
AluI AGCT 6 cut(s) 119, 367, 586, 824, 828, 854
Alw21I GWGCWC 1 cut(s) 320
Alw26I GTCTC 6 cut(s) 229, 290, 345, 428, 577, 788
Alw44I GTGCAC 1 cut(s) 316
AlwI GGATC 1 cut(s) 448
Ama87I CYCGRG 2 cut(s) 101, 791
AoxI GGCC 4 cut(s) 215, 229, 817, 836
ApaLI GTGCAC 1 cut(s) 316
ApeKI GCWGC 3 cut(s) 306, 848, 851
Asp700I GAANNNNTTC 1 cut(s) 83
AspLEI GCGC 3 cut(s) 311, 626, 676
AspS9I GGNCC 4 cut(s) 98, 197, 229, 818
AsuHPI GGTGA 2 cut(s) 628, 747
AsuNHI GCTAGC 1 cut(s) 824
AvaI CYCGRG 2 cut(s) 101, 791
AvaII GGWCC 2 cut(s) 98, 197
AxyI CCTNAGG 1 cut(s) 240
BaeGI GKGCMC 1 cut(s) 320
BarI GAAGNNNNNNTAC 1 cut(s) 28
BauI CACGAG 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 320
BbvI GCAGC 2 cut(s) 318, 835
BccI CCATC 2 cut(s) 308, 413
BceAI ACGGC 1 cut(s) 578
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BciT130I CCWGG 1 cut(s) 313
BcoDI GTCTC 6 cut(s) 229, 290, 345, 428, 577, 788
BfaI CTAG 1 cut(s) 825
BfmI CTRYAG 2 cut(s) 304, 849
BfoI RGCGCY 1 cut(s) 312
BisI GCNGC 4 cut(s) 218, 307, 849, 852
BlsI GCNGC 4 cut(s) 219, 308, 850, 853
Bme1390I CCNGG 1 cut(s) 313
Bme18I GGWCC 2 cut(s) 98, 197
BmeT110I CYCGRG 2 cut(s) 101, 791
BmgBI CACGTC 1 cut(s) 352
BmgT120I GGNCC 4 cut(s) 98, 197, 229, 818
BmiI GGNNCC 3 cut(s) 100, 230, 746
BmrFI CCNGG 1 cut(s) 313
BmtI GCTAGC 1 cut(s) 828
BpuEI CTTGAG 3 cut(s) 99, 561, 730
Bsa29I ATCGAT 1 cut(s) 129
BsaAI YACGTR 1 cut(s) 505
BsaI GGTCTC 3 cut(s) 229, 290, 788
BsaJI CCNNGG 5 cut(s) 102, 172, 193, 436, 839
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 368
Bse1I ACTGG 1 cut(s) 643
Bse21I CCTNAGG 1 cut(s) 240
Bse3DI GCAATG 1 cut(s) 465
BseBI CCWGG 1 cut(s) 313
BseCI ATCGAT 1 cut(s) 129
BseDI CCNNGG 5 cut(s) 102, 172, 193, 436, 839
BseGI GGATG 2 cut(s) 405, 417
BseLI CCNNNNNNNGG 2 cut(s) 227, 368
BseMI GCAATG 1 cut(s) 465
BseMII CTCAG 3 cut(s) 254, 441, 717
BseNI ACTGG 1 cut(s) 643
BseRI GAGGAG 2 cut(s) 260, 308
BseSI GKGCMC 1 cut(s) 320
BseXI GCAGC 2 cut(s) 318, 835
BseYI CCCAGC 1 cut(s) 820
Bsh1236I CGCG 3 cut(s) 488, 624, 674
BshFI GGCC 4 cut(s) 217, 231, 819, 838
BshVI ATCGAT 1 cut(s) 129
BsiHKAI GWGCWC 1 cut(s) 320
BsiHKCI CYCGRG 2 cut(s) 101, 791
BsiSI CCGG 1 cut(s) 21
BslFI GGGAC 1 cut(s) 708
BslI CCNNNNNNNGG 2 cut(s) 227, 368
BsmAI GTCTC 6 cut(s) 229, 290, 345, 428, 577, 788
BsmBI CGTCTC 2 cut(s) 345, 428
BsmFI GGGAC 1 cut(s) 708
BsnI GGCC 4 cut(s) 217, 231, 819, 838
Bso31I GGTCTC 3 cut(s) 229, 290, 788
BsoBI CYCGRG 2 cut(s) 101, 791
Bsp1286I GDGCHC 1 cut(s) 320
Bsp1407I TGTACA 1 cut(s) 354
Bsp143I GATC 5 cut(s) 126, 130, 397, 440, 531
BspACI CCGC 2 cut(s) 218, 692
BspANI GGCC 4 cut(s) 217, 231, 819, 838
BspCNI CTCAG 3 cut(s) 253, 440, 716
BspDI ATCGAT 1 cut(s) 129
BspFNI CGCG 3 cut(s) 488, 624, 674
BspLI GGNNCC 3 cut(s) 100, 230, 746
BspMAI CTGCAG 2 cut(s) 308, 853
BspOI GCTAGC 1 cut(s) 828
BspPI GGATC 1 cut(s) 448
BspTNI GGTCTC 3 cut(s) 229, 290, 788
BsrDI GCAATG 1 cut(s) 465
BsrGI TGTACA 1 cut(s) 354
BsrI ACTGG 1 cut(s) 643
BssECI CCNNGG 5 cut(s) 102, 172, 193, 436, 839
BssMI GATC 5 cut(s) 126, 130, 397, 440, 531
BssSI CACGAG 1 cut(s) 342
BssT1I CCWWGG 2 cut(s) 193, 839
Bst2BI CACGAG 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 313
Bst4CI ACNGT 5 cut(s) 173, 201, 281, 392, 474
BstAUI TGTACA 1 cut(s) 354
BstBAI YACGTR 1 cut(s) 505
BstC8I GCNNGC 1 cut(s) 826
BstDEI CTNAG 5 cut(s) 16, 240, 289, 427, 703
BstDSI CCRYGG 2 cut(s) 172, 436
BstF5I GGATG 2 cut(s) 405, 417
BstFNI CGCG 3 cut(s) 488, 624, 674
BstH2I RGCGCY 1 cut(s) 312
BstHHI GCGC 3 cut(s) 311, 626, 676
BstKTI GATC 5 cut(s) 129, 133, 400, 443, 534
BstMAI GTCTC 6 cut(s) 229, 290, 345, 428, 577, 788
BstMBI GATC 5 cut(s) 126, 130, 397, 440, 531
BstMWI GCNNNNNNNGC 3 cut(s) 315, 630, 825
BstNI CCWGG 1 cut(s) 313
BstSCI CCNGG 1 cut(s) 311
BstSFI CTRYAG 2 cut(s) 304, 849
BstSLI GKGCMC 1 cut(s) 320
BstUI CGCG 3 cut(s) 488, 624, 674
BstV1I GCAGC 2 cut(s) 318, 835
BstX2I RGATCY 1 cut(s) 440
BstYI RGATCY 1 cut(s) 440
Bsu15I ATCGAT 1 cut(s) 129
Bsu36I CCTNAGG 1 cut(s) 240
BsuRI GGCC 4 cut(s) 217, 231, 819, 838
BsuTUI ATCGAT 1 cut(s) 129
BtgI CCRYGG 2 cut(s) 172, 436
BtrI CACGTC 1 cut(s) 352
BtsCI GGATG 2 cut(s) 405, 417
BtsI GCAGTG 1 cut(s) 820
BtsIMutI CAGTG 3 cut(s) 479, 650, 820
Cac8I GCNNGC 1 cut(s) 826
CfoI GCGC 3 cut(s) 311, 626, 676
Cfr13I GGNCC 4 cut(s) 98, 197, 229, 818
ClaI ATCGAT 1 cut(s) 129
Csp6I GTAC 2 cut(s) 355, 596
CviAII CATG 1 cut(s) 269
CviQI GTAC 2 cut(s) 355, 596
DdeI CTNAG 5 cut(s) 16, 240, 289, 427, 703
DpnI GATC 5 cut(s) 128, 132, 399, 442, 533
DpnII GATC 5 cut(s) 126, 130, 397, 440, 531
DrdI GACNNNNNNGTC 1 cut(s) 569
DseDI GACNNNNNNGTC 1 cut(s) 569
Eco130I CCWWGG 2 cut(s) 193, 839
Eco31I GGTCTC 3 cut(s) 229, 290, 788
Eco47I GGWCC 2 cut(s) 98, 197
Eco57I CTGAAG 2 cut(s) 119, 137
Eco81I CCTNAGG 1 cut(s) 240
Eco88I CYCGRG 2 cut(s) 101, 791
EcoRII CCWGG 1 cut(s) 311
EcoT14I CCWWGG 2 cut(s) 193, 839
ErhI CCWWGG 2 cut(s) 193, 839
Esp3I CGTCTC 2 cut(s) 345, 428
FaeI CATG 1 cut(s) 272
FaiI YATR 4 cut(s) 46, 270, 590, 734
FaqI GGGAC 1 cut(s) 708
FatI CATG 1 cut(s) 268
FauI CCCGC 1 cut(s) 685
Fnu4HI GCNGC 4 cut(s) 218, 307, 849, 852
FokI GGATG 2 cut(s) 392, 404
Fsp4HI GCNGC 4 cut(s) 218, 307, 849, 852
FspBI CTAG 1 cut(s) 825
GlaI GCGC 3 cut(s) 310, 625, 675
GluI GCNGC 4 cut(s) 218, 307, 849, 852
GsaI CCCAGC 1 cut(s) 824
HaeII RGCGCY 1 cut(s) 312
HaeIII GGCC 4 cut(s) 217, 231, 819, 838
HapII CCGG 1 cut(s) 21
HhaI GCGC 3 cut(s) 311, 626, 676
Hin1II CATG 1 cut(s) 272
Hin6I GCGC 3 cut(s) 309, 624, 674
HinP1I GCGC 3 cut(s) 309, 624, 674
HindIII AAGCTT 1 cut(s) 117
HinfI GANTC 3 cut(s) 189, 639, 805
HpaII CCGG 1 cut(s) 21
HphI GGTGA 2 cut(s) 628, 747
Hpy166II GTNNAC 4 cut(s) 318, 355, 538, 719
Hpy188I TCNGA 3 cut(s) 138, 156, 188
Hpy188III TCNNGA 4 cut(s) 242, 529, 709, 793
Hpy8I GTNNAC 4 cut(s) 318, 355, 538, 719
HpyAV CCTTC 3 cut(s) 254, 419, 828
HpyCH4III ACNGT 5 cut(s) 173, 201, 281, 392, 474
HpyCH4IV ACGT 2 cut(s) 351, 504
HpyCH4V TGCA 3 cut(s) 306, 318, 851
HpyF10VI GCNNNNNNNGC 3 cut(s) 315, 630, 825
HpyF3I CTNAG 5 cut(s) 16, 240, 289, 427, 703
HpySE526I ACGT 2 cut(s) 351, 504
Hsp92II CATG 1 cut(s) 272
HspAI GCGC 3 cut(s) 309, 624, 674
Kzo9I GATC 5 cut(s) 126, 130, 397, 440, 531
LpnPI CCDG 9 cut(s) 34, 227, 245, 298, 325, 542, 656, 674, 834
Lsp1109I GCAGC 2 cut(s) 318, 835
MaeI CTAG 1 cut(s) 825
MaeII ACGT 2 cut(s) 351, 504
MaeIII GTNAC 4 cut(s) 371, 392, 505, 548
MalI GATC 5 cut(s) 128, 132, 399, 442, 533
MboI GATC 5 cut(s) 126, 130, 397, 440, 531
MboII GAAGA 7 cut(s) 88, 125, 136, 263, 266, 269, 773
MflI RGATCY 1 cut(s) 440
MhlI GDGCHC 1 cut(s) 320
MlyI GAGTC 2 cut(s) 198, 799
MroXI GAANNNNTTC 1 cut(s) 83
MseI TTAA 1 cut(s) 856
MslI CAYNNNNRTG 2 cut(s) 282, 813
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 313
MvaI CCWGG 1 cut(s) 313
MvnI CGCG 3 cut(s) 488, 624, 674
MwoI GCNNNNNNNGC 3 cut(s) 315, 630, 825
NdeII GATC 5 cut(s) 126, 130, 397, 440, 531
NheI GCTAGC 1 cut(s) 824
NlaIII CATG 1 cut(s) 272
NlaIV GGNNCC 3 cut(s) 100, 230, 746
NmuCI GTSAC 1 cut(s) 505
OliI CACNNNNGTG 1 cut(s) 813
PaeR7I CTCGAG 1 cut(s) 791
PcsI WCGNNNNNNNCGW 2 cut(s) 271, 418
PdmI GAANNNNTTC 1 cut(s) 83
PfeI GAWTC 1 cut(s) 639
PkrI GCNGC 4 cut(s) 219, 308, 850, 853
PleI GAGTC 2 cut(s) 197, 799
PpsI GAGTC 2 cut(s) 197, 799
Ppu21I YACGTR 1 cut(s) 505
Psp6I CCWGG 1 cut(s) 311
PspFI CCCAGC 1 cut(s) 820
PspGI CCWGG 1 cut(s) 311
PspN4I GGNNCC 3 cut(s) 100, 230, 746
PspPI GGNCC 4 cut(s) 98, 197, 229, 818
PstI CTGCAG 2 cut(s) 308, 853
PsuI RGATCY 1 cut(s) 440
RsaI GTAC 2 cut(s) 356, 597
RsaNI GTAC 2 cut(s) 355, 596
RseI CAYNNNNRTG 2 cut(s) 282, 813
SaqAI TTAA 1 cut(s) 856
SatI GCNGC 4 cut(s) 218, 307, 849, 852
Sau3AI GATC 5 cut(s) 126, 130, 397, 440, 531
Sau96I GGNCC 4 cut(s) 98, 197, 229, 818
SchI GAGTC 2 cut(s) 198, 799
ScrFI CCNGG 1 cut(s) 313
SduI GDGCHC 1 cut(s) 320
SfcI CTRYAG 2 cut(s) 304, 849
Sfr274I CTCGAG 1 cut(s) 791
SinI GGWCC 2 cut(s) 98, 197
SlaI CTCGAG 1 cut(s) 791
SmiMI CAYNNNNRTG 2 cut(s) 282, 813
SmlI CTYRAG 4 cut(s) 114, 576, 709, 791
SmoI CTYRAG 4 cut(s) 114, 576, 709, 791
SsiI CCGC 2 cut(s) 218, 692
SspMI CTAG 1 cut(s) 825
StyD4I CCNGG 1 cut(s) 311
StyI CCWWGG 2 cut(s) 193, 839
TaaI ACNGT 5 cut(s) 173, 201, 281, 392, 474
TaiI ACGT 2 cut(s) 354, 507
TaqI TCGA 3 cut(s) 129, 330, 792
TatI WGTACW 1 cut(s) 354
TauI GCSGC 1 cut(s) 220
TfiI GAWTC 1 cut(s) 639
Tru1I TTAA 1 cut(s) 856
Tru9I TTAA 1 cut(s) 856
TscAI CASTG 3 cut(s) 479, 650, 820
TseFI GTSAC 1 cut(s) 505
TseI GCWGC 3 cut(s) 306, 848, 851
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 2 cut(s) 17, 406
TspGWI ACGGA 5 cut(s) 410, 425, 437, 579, 846
TspRI CASTG 3 cut(s) 479, 650, 820
VneI GTGCAC 1 cut(s) 316
VpaK11BI GGWCC 2 cut(s) 98, 197
XhoI CTCGAG 1 cut(s) 791
XmnI GAANNNNTTC 1 cut(s) 83
XspI CTAG 1 cut(s) 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.