Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Forward (+)

51334893 .. 51335172

Gene Structure 280 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25845

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGAATGCTATCTACAGCCAACACTGGAACTTGAACGCCCGGGAAGTCTACTATGTCATTAGAGGTAGTGATAGGGTTCAAGTCGTGAATGACAATGGCGAGGCCATCTTGGACAACGAGGTTCGCCAGGGACAGCTCTTCATCATGCCACAAAACCACGCCGCGCGTTTTGCAGAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

60

Amino Acids

6.92

Weight (kDa)

5.45

Isoelectric Point (pI)

24.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	2 - 54	1.3e-11	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	48
AccII	CGCG	2 cut(s)	164, 166
AciI	CCGC	1 cut(s)	162
AgsI	TTSAA	2 cut(s)	34, 80
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
Ama87I	CYCGRG	1 cut(s)	39
AoxI	GGCC	1 cut(s)	102
AspLEI	GCGC	1 cut(s)	166
AsuC2I	CCSGG	2 cut(s)	40, 41
AvaI	CYCGRG	1 cut(s)	39
BccI	CCATC	1 cut(s)	113
BciT130I	CCWGG	1 cut(s)	128
BcnI	CCSGG	2 cut(s)	40, 41
BfaI	CTAG	1 cut(s)	181
BfmI	CTRYAG	1 cut(s)	13
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	3 cut(s)	40, 41, 128
BmeT110I	CYCGRG	1 cut(s)	39
BmrFI	CCNGG	3 cut(s)	40, 41, 128
BpuMI	CCSGG	2 cut(s)	40, 41
BsaJI	CCNNGG	2 cut(s)	39, 127
Bse1I	ACTGG	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	2 cut(s)	39, 127
BseNI	ACTGG	1 cut(s)	29
Bsh1236I	CGCG	2 cut(s)	164, 166
BshFI	GGCC	1 cut(s)	104
BsiHKCI	CYCGRG	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	40
BslFI	GGGAC	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	144
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	104
BsoBI	CYCGRG	1 cut(s)	39
BspACI	CCGC	1 cut(s)	162
BspANI	GGCC	1 cut(s)	104
BspFNI	CGCG	2 cut(s)	164, 166
BspQI	GCTCTTC	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	29
BssECI	CCNNGG	2 cut(s)	39, 127
Bst2UI	CCWGG	1 cut(s)	128
Bst6I	CTCTTC	1 cut(s)	143
BstFNI	CGCG	2 cut(s)	164, 166
BstHHI	GCGC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	3 cut(s)	38, 39, 126
BstSFI	CTRYAG	1 cut(s)	13
BstUI	CGCG	2 cut(s)	164, 166
BsuRI	GGCC	1 cut(s)	104
BtsIMutI	CAGTG	1 cut(s)	22
CfoI	GCGC	1 cut(s)	166
Cfr9I	CCCGGG	1 cut(s)	39
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	4 cut(s)	18, 104, 136, 180
CviKI_1	RGCY	4 cut(s)	18, 104, 136, 180
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Eco88I	CYCGRG	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	126
FaeI	CATG	1 cut(s)	148
FaiI	YATR	2 cut(s)	54, 146
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	1 cut(s)	144
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	1 cut(s)	181
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	1 cut(s)	40
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	1 cut(s)	148
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HpaII	CCGG	1 cut(s)	40
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188III	TCNNGA	1 cut(s)	85
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	1 cut(s)	170
HpyCH4V	TGCA	1 cut(s)	173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
Hsp92II	CATG	1 cut(s)	148
HspAI	GCGC	1 cut(s)	164
LguI	GCTCTTC	1 cut(s)	143
LpnPI	CCDG	4 cut(s)	10, 53, 113, 140
MaeI	CTAG	1 cut(s)	181
MboII	GAAGA	1 cut(s)	130
MnlI	CCTC	3 cut(s)	56, 94, 112
MspI	CCGG	1 cut(s)	40
MspR9I	CCNGG	3 cut(s)	40, 41, 128
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	2 cut(s)	164, 166
MwoI	GCNNNNNNNGC	1 cut(s)	170
NciI	CCSGG	2 cut(s)	40, 41
NlaIII	CATG	1 cut(s)	148
PciSI	GCTCTTC	1 cut(s)	143
PctI	GAATGC	1 cut(s)	10
PkrI	GCNGC	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
SapI	GCTCTTC	1 cut(s)	143
SatI	GCNGC	1 cut(s)	162
ScrFI	CCNGG	3 cut(s)	40, 41, 128
SetI	ASST	3 cut(s)	67, 123, 138
SfcI	CTRYAG	1 cut(s)	13
SmaI	CCCGGG	1 cut(s)	41
SsiI	CCGC	1 cut(s)	162
SspMI	CTAG	1 cut(s)	181
StyD4I	CCNGG	3 cut(s)	38, 39, 126
TauI	GCSGC	1 cut(s)	164
TscAI	CASTG	1 cut(s)	29
TspDTI	ATGAA	2 cut(s)	17, 130
TspMI	CCCGGG	1 cut(s)	39
TspRI	CASTG	1 cut(s)	29
XmaI	CCCGGG	1 cut(s)	39
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.