Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005266.1

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Forward (+)

39823 .. 40341

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005266.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atggctaggtctttagctctctctttttgcttgcttgttctctttcatggctgcttagccgatcgccaacagtctcaatacagccagagcgggcaaaatgagtgccagatcaaccagctccaggcccgcgagcccgacaaccgcattgagactgaggcgggtcggatcgagtcatgggactacaaccaggatgacttccagtgcaccggagtagccgttcagagaatcatcgtcgagcgcaacggccttcacttgccttcttacaccaatactcctcgccttgtttacgttgtccaagccaacgcttaccagatggaccgtgagcaggcaaggagcctcaagtacaacaggcaggagacccttgccttgagctcctcaaggtctttccagtcacagaggagttggtgggctattgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

139

Amino Acids

16.06

Weight (kDa)

6.72

Isoelectric Point (pI)

60.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	90
AccII	CGCG	1 cut(s)	129
AciI	CCGC	4 cut(s)	90, 127, 142, 158
AclWI	GGATC	1 cut(s)	173
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	2 cut(s)	121, 325
AjnI	CCWGG	2 cut(s)	120, 186
AloI	GAACNNNNNNTCC	2 cut(s)	201, 233
AluBI	AGCT	3 cut(s)	17, 118, 372
AluI	AGCT	3 cut(s)	17, 118, 372
Alw21I	GWGCWC	2 cut(s)	206, 374
Alw26I	GTCTC	3 cut(s)	78, 143, 350
Alw44I	GTGCAC	1 cut(s)	202
AlwI	GGATC	1 cut(s)	173
AoxI	GGCC	2 cut(s)	123, 244
ApaLI	GTGCAC	1 cut(s)	202
ApeKI	GCWGC	1 cut(s)	51
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	2 cut(s)	124, 316
AvaII	GGWCC	1 cut(s)	316
BaeGI	GKGCMC	1 cut(s)	206
BanII	GRGCYC	2 cut(s)	135, 374
Bbv12I	GWGCWC	2 cut(s)	206, 374
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	1 cut(s)	307
BceAI	ACGGC	2 cut(s)	200, 259
BciT130I	CCWGG	2 cut(s)	122, 188
BcoDI	GTCTC	3 cut(s)	78, 143, 350
BfaI	CTAG	1 cut(s)	6
BisI	GCNGC	1 cut(s)	52
BlpI	GCTNAGC	1 cut(s)	55
BlsI	GCNGC	1 cut(s)	53
Bme1390I	CCNGG	2 cut(s)	122, 188
Bme18I	GGWCC	1 cut(s)	316
BmgT120I	GGNCC	2 cut(s)	124, 316
BmiI	GGNNCC	1 cut(s)	335
BmrFI	CCNGG	2 cut(s)	122, 188
BpmI	CTGGAG	1 cut(s)	104
Bpu1102I	GCTNAGC	1 cut(s)	55
BpuEI	CTTGAG	3 cut(s)	323, 361, 388
BsaI	GGTCTC	1 cut(s)	350
BsaWI	WCCGGW	1 cut(s)	206
BsaXI	ACNNNNNCTCC	4 cut(s)	201, 231, 256, 286
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 325
Bse1I	ACTGG	2 cut(s)	199, 388
BseBI	CCWGG	2 cut(s)	122, 188
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	2 cut(s)	121, 325
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	2 cut(s)	199, 388
BseRI	GAGGAG	3 cut(s)	264, 364, 412
BseSI	GKGCMC	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	38
Bsh1236I	CGCG	1 cut(s)	129
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	2 cut(s)	125, 246
BsiEI	CGRYCG	1 cut(s)	64
BsiHKAI	GWGCWC	2 cut(s)	206, 374
BsiSI	CCGG	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	2 cut(s)	121, 325
BsmAI	GTCTC	3 cut(s)	78, 143, 350
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	2 cut(s)	125, 246
Bso31I	GGTCTC	1 cut(s)	350
Bsp1286I	GDGCHC	3 cut(s)	135, 206, 374
Bsp143I	GATC	3 cut(s)	61, 108, 165
Bsp1720I	GCTNAGC	1 cut(s)	55
BspACI	CCGC	4 cut(s)	90, 127, 142, 158
BspANI	GGCC	2 cut(s)	125, 246
BspCNI	CTCAG	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	1 cut(s)	335
BspPI	GGATC	1 cut(s)	173
BspTNI	GGTCTC	1 cut(s)	350
BsrBI	CCGCTC	1 cut(s)	90
BsrI	ACTGG	2 cut(s)	199, 388
BssMI	GATC	3 cut(s)	61, 108, 165
Bst2UI	CCWGG	2 cut(s)	122, 188
Bst4CI	ACNGT	2 cut(s)	72, 320
BstC8I	GCNNGC	5 cut(s)	32, 92, 127, 131, 327
BstDEI	CTNAG	2 cut(s)	55, 153
BstF5I	GGATG	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	3 cut(s)	64, 111, 168
BstMAI	GTCTC	3 cut(s)	78, 143, 350
BstMBI	GATC	3 cut(s)	61, 108, 165
BstMCI	CGRYCG	1 cut(s)	64
BstNI	CCWGG	2 cut(s)	122, 188
BstSCI	CCNGG	2 cut(s)	120, 186
BstSLI	GKGCMC	1 cut(s)	206
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	38
BsuRI	GGCC	2 cut(s)	125, 246
BtsCI	GGATG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	206
Cac8I	GCNNGC	5 cut(s)	32, 92, 127, 131, 327
CfoI	GCGC	1 cut(s)	240
Cfr13I	GGNCC	2 cut(s)	124, 316
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	2 cut(s)	47, 174
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	2 cut(s)	55, 153
DpnI	GATC	3 cut(s)	63, 110, 167
DpnII	GATC	3 cut(s)	61, 108, 165
Ecl136II	GAGCTC	1 cut(s)	372
Eco24I	GRGCYC	2 cut(s)	135, 374
Eco31I	GGTCTC	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	316
Eco53kI	GAGCTC	1 cut(s)	372
EcoICRI	GAGCTC	1 cut(s)	372
EcoRII	CCWGG	2 cut(s)	120, 186
EcoT38I	GRGCYC	2 cut(s)	135, 374
FaeI	CATG	2 cut(s)	50, 177
FaiI	YATR	2 cut(s)	48, 175
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	2 cut(s)	46, 173
FauI	CCCGC	3 cut(s)	83, 134, 151
Fnu4HI	GCNGC	1 cut(s)	52
FokI	GGATG	1 cut(s)	203
FriOI	GRGCYC	2 cut(s)	135, 374
Fsp4HI	GCNGC	1 cut(s)	52
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	1 cut(s)	52
GsuI	CTGGAG	1 cut(s)	104
HaeIII	GGCC	2 cut(s)	125, 246
HapII	CCGG	1 cut(s)	207
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	2 cut(s)	50, 177
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HinfI	GANTC	2 cut(s)	170, 225
HpaII	CCGG	1 cut(s)	207
Hpy166II	GTNNAC	2 cut(s)	204, 286
Hpy188I	TCNGA	2 cut(s)	165, 222
Hpy8I	GTNNAC	2 cut(s)	204, 286
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	2 cut(s)	257, 267
HpyCH4III	ACNGT	2 cut(s)	72, 320
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	1 cut(s)	204
HpyF3I	CTNAG	2 cut(s)	55, 153
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	2 cut(s)	50, 177
HspAI	GCGC	1 cut(s)	238
Kzo9I	GATC	3 cut(s)	61, 108, 165
LmnI	GCTCC	3 cut(s)	123, 333, 377
Lsp1109I	GCAGC	1 cut(s)	38
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	390
MalI	GATC	3 cut(s)	63, 110, 167
MbiI	CCGCTC	1 cut(s)	90
MboI	GATC	3 cut(s)	61, 108, 165
MhlI	GDGCHC	3 cut(s)	135, 206, 374
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	5 cut(s)	148, 285, 347, 385, 390
MseI	TTAA	1 cut(s)	418
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	2 cut(s)	122, 188
MvaI	CCWGG	2 cut(s)	122, 188
MvnI	CGCG	1 cut(s)	129
NdeII	GATC	3 cut(s)	61, 108, 165
NlaIII	CATG	2 cut(s)	50, 177
NlaIV	GGNNCC	1 cut(s)	335
NmuCI	GTSAC	1 cut(s)	390
PfeI	GAWTC	1 cut(s)	225
PkrI	GCNGC	1 cut(s)	53
Ple19I	CGATCG	1 cut(s)	64
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
Psp124BI	GAGCTC	1 cut(s)	374
Psp6I	CCWGG	2 cut(s)	120, 186
PspGI	CCWGG	2 cut(s)	120, 186
PspN4I	GGNNCC	1 cut(s)	335
PspPI	GGNCC	2 cut(s)	124, 316
PvuI	CGATCG	1 cut(s)	64
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SacI	GAGCTC	1 cut(s)	374
SaqAI	TTAA	1 cut(s)	418
SatI	GCNGC	1 cut(s)	52
Sau3AI	GATC	3 cut(s)	61, 108, 165
Sau96I	GGNCC	2 cut(s)	124, 316
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	2 cut(s)	122, 188
SduI	GDGCHC	3 cut(s)	135, 206, 374
SetI	ASST	6 cut(s)	11, 19, 120, 291, 374, 383
SinI	GGWCC	1 cut(s)	316
SmlI	CTYRAG	3 cut(s)	338, 367, 376
SmoI	CTYRAG	3 cut(s)	338, 367, 376
SsiI	CCGC	4 cut(s)	90, 127, 142, 158
SspMI	CTAG	1 cut(s)	6
SstI	GAGCTC	1 cut(s)	374
StyD4I	CCNGG	2 cut(s)	120, 186
TaaI	ACNGT	2 cut(s)	72, 320
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	2 cut(s)	168, 234
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	1 cut(s)	225
Tru1I	TTAA	1 cut(s)	418
Tru9I	TTAA	1 cut(s)	418
TscAI	CASTG	1 cut(s)	206
TseFI	GTSAC	1 cut(s)	390
TseI	GCWGC	1 cut(s)	51
Tsp45I	GTSAC	1 cut(s)	390
TspDTI	ATGAA	1 cut(s)	35
TspRI	CASTG	1 cut(s)	206
VneI	GTGCAC	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	316
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.