Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Forward (+)

21339189 .. 21339977

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g18390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGAGAAATTCTATCTCGCTGGTAACCCAGAGAATGAGTTTGAGCAACAAGGCCAGAGCCAACACCGCCAACCACGCCAATTCGGGCAGGGCGGCCAGAGAGAGCAGCAACAATTTGGGCAGCAGGGACAACAAGGACGACGACAACAACAACAACAACAAGGACGCCAACAACAACAGGGCCGCGGCCAGCAGCAACAAGGAAGCAGCAACAACGTCTTCTCCGGTATGAATACTCAACTCCTCGCCCAGGCACTCAATATCGACGAAGAGACCGCCAGGAGCCTCCAGGGATCAGAGAACGACAACAGGAACCAGATCATCCAAGTCAGAGGCCAGCTCGACTTCCTCCAGCCACCTAGAGGCCGACAGCAGCGCGAGCACGAGGAGAGGGAGCAGCGCCAGGTTGAGCAGGAGAGGAGGCAACAAGGCGGACAGCAGGGTTTGGTGGCGGCCAACGGCCTCGAGGAGACTTTCTGCTCCATGAGGTTGATTGAGCACATTGGCAACCCTCAGCGCGCCGATGTCTACTCTCCTCAGGCAGGCCGTATCAGCACCCTCAACAGCCTCAACCTCCCCATCCTCAGTGCTGTCCAACTCAGTGCCGAGAGAGGCTTCTTCTACAGCGTAAGTAAAATAATTTACATGCATAGATACCTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

222

Amino Acids

25.41

Weight (kDa)

8.92

Isoelectric Point (pI)

71.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	464
AccI	GTMKAC	1 cut(s)	528
AccII	CGCG	3 cut(s)	186, 378, 519
AciI	CCGC	7 cut(s)	67, 93, 184, 186, 276, 432, 452
AclWI	GGATC	1 cut(s)	301
AcoI	YGGCCR	3 cut(s)	94, 187, 453
AcsI	RAATTY	1 cut(s)	8
AcyI	GRCGYC	1 cut(s)	166
AfiI	CCNNNNNNNGG	3 cut(s)	250, 362, 542
AjnI	CCWGG	4 cut(s)	249, 278, 288, 402
AluBI	AGCT	1 cut(s)	340
AluI	AGCT	1 cut(s)	340
Alw21I	GWGCWC	2 cut(s)	384, 501
Alw26I	GTCTC	2 cut(s)	266, 464
AlwI	GGATC	1 cut(s)	301
Ama87I	CYCGRG	1 cut(s)	464
AoxI	GGCC	9 cut(s)	52, 94, 181, 187, 334, 364, 453, 460, 544
ApeKI	GCWGC	6 cut(s)	106, 121, 193, 207, 373, 397
ApoI	RAATTY	1 cut(s)	8
AspLEI	GCGC	4 cut(s)	378, 402, 519, 521
AspS9I	GGNCC	1 cut(s)	181
AvaI	CYCGRG	1 cut(s)	464
AxyI	CCTNAGG	1 cut(s)	537
BauI	CACGAG	1 cut(s)	383
BbsI	GAAGAC	1 cut(s)	211
Bbv12I	GWGCWC	2 cut(s)	384, 501
BbvCI	CCTCAGC	1 cut(s)	513
BbvI	GCAGC	6 cut(s)	118, 133, 205, 219, 385, 409
BccI	CCATC	1 cut(s)	587
BceAI	ACGGC	2 cut(s)	475, 531
BciT130I	CCWGG	4 cut(s)	251, 280, 290, 404
BcoDI	GTCTC	2 cut(s)	266, 464
BfaI	CTAG	1 cut(s)	360
BfmI	CTRYAG	1 cut(s)	622
BfoI	RGCGCY	1 cut(s)	403
Bme1390I	CCNGG	4 cut(s)	251, 280, 290, 404
BmeT110I	CYCGRG	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	2 cut(s)	284, 314
BmrFI	CCNGG	4 cut(s)	251, 280, 290, 404
BpiI	GAAGAC	1 cut(s)	211
BplI	GAGNNNNNCTC	2 cut(s)	324, 356
BpmI	CTGGAG	2 cut(s)	272, 335
Bpu10I	CCTNAGC	1 cut(s)	513
BsaHI	GRCGYC	1 cut(s)	166
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	3 cut(s)	184, 249, 289
BsaWI	WCCGGW	1 cut(s)	224
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	3 cut(s)	250, 362, 542
Bse21I	CCTNAGG	1 cut(s)	537
BseBI	CCWGG	4 cut(s)	251, 280, 290, 404
BseDI	CCNNGG	3 cut(s)	184, 249, 289
BseGI	GGATG	2 cut(s)	321, 579
BseLI	CCNNNNNNNGG	3 cut(s)	250, 362, 542
BseMII	CTCAG	4 cut(s)	527, 551, 598, 613
BsePI	GCGCGC	1 cut(s)	517
BseRI	GAGGAG	5 cut(s)	233, 401, 433, 482, 525
BseXI	GCAGC	6 cut(s)	118, 133, 205, 219, 385, 409
Bsh1236I	CGCG	3 cut(s)	186, 378, 519
BshFI	GGCC	9 cut(s)	54, 96, 183, 189, 336, 366, 455, 462, 546
BsiHKAI	GWGCWC	2 cut(s)	384, 501
BsiHKCI	CYCGRG	1 cut(s)	464
BsiSI	CCGG	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	3 cut(s)	250, 362, 542
BsmAI	GTCTC	2 cut(s)	266, 464
BsmFI	GGGAC	1 cut(s)	141
BsnI	GGCC	9 cut(s)	54, 96, 183, 189, 336, 366, 455, 462, 546
Bso31I	GGTCTC	1 cut(s)	266
BsoBI	CYCGRG	1 cut(s)	464
Bsp1286I	GDGCHC	2 cut(s)	384, 501
Bsp143I	GATC	2 cut(s)	293, 318
BspACI	CCGC	7 cut(s)	67, 93, 184, 186, 276, 432, 452
BspANI	GGCC	9 cut(s)	54, 96, 183, 189, 336, 366, 455, 462, 546
BspCNI	CTCAG	4 cut(s)	526, 550, 597, 612
BspFNI	CGCG	3 cut(s)	186, 378, 519
BspLI	GGNNCC	2 cut(s)	284, 314
BspPI	GGATC	1 cut(s)	301
BspTNI	GGTCTC	1 cut(s)	266
BssECI	CCNNGG	3 cut(s)	184, 249, 289
BssHII	GCGCGC	1 cut(s)	517
BssMI	GATC	2 cut(s)	293, 318
BssNI	GRCGYC	1 cut(s)	166
BssSI	CACGAG	1 cut(s)	383
Bst2BI	CACGAG	1 cut(s)	383
Bst2UI	CCWGG	4 cut(s)	251, 280, 290, 404
Bst6I	CTCTTC	1 cut(s)	264
BstACI	GRCGYC	1 cut(s)	166
BstC8I	GCNNGC	5 cut(s)	191, 338, 380, 519, 544
BstDEI	CTNAG	4 cut(s)	513, 537, 584, 599
BstDSI	CCRYGG	1 cut(s)	184
BstEII	GGTNACC	1 cut(s)	23
BstENI	CCTNNNNNAGG	2 cut(s)	248, 540
BstF5I	GGATG	2 cut(s)	321, 579
BstFNI	CGCG	3 cut(s)	186, 378, 519
BstH2I	RGCGCY	1 cut(s)	403
BstHHI	GCGC	4 cut(s)	378, 402, 519, 521
BstKTI	GATC	2 cut(s)	296, 321
BstMAI	GTCTC	2 cut(s)	266, 464
BstMBI	GATC	2 cut(s)	293, 318
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 75, 379, 552
BstNI	CCWGG	4 cut(s)	251, 280, 290, 404
BstNSI	RCATGY	1 cut(s)	649
BstPI	GGTNACC	1 cut(s)	23
BstSCI	CCNGG	4 cut(s)	249, 278, 288, 402
BstSFI	CTRYAG	1 cut(s)	622
BstUI	CGCG	3 cut(s)	186, 378, 519
BstV1I	GCAGC	6 cut(s)	118, 133, 205, 219, 385, 409
BstV2I	GAAGAC	1 cut(s)	211
Bsu36I	CCTNAGG	1 cut(s)	537
BsuRI	GGCC	9 cut(s)	54, 96, 183, 189, 336, 366, 455, 462, 546
BtgI	CCRYGG	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	321, 579
BtsIMutI	CAGTG	2 cut(s)	592, 607
Cac8I	GCNNGC	5 cut(s)	191, 338, 380, 519, 544
CfoI	GCGC	4 cut(s)	378, 402, 519, 521
Cfr13I	GGNCC	1 cut(s)	181
Cfr42I	CCGCGG	1 cut(s)	187
CseI	GACGC	1 cut(s)	174
CviAII	CATG	2 cut(s)	484, 646
DdeI	CTNAG	4 cut(s)	513, 537, 584, 599
DpnI	GATC	2 cut(s)	295, 320
DpnII	GATC	2 cut(s)	293, 318
EaeI	YGGCCR	3 cut(s)	94, 187, 453
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
EciI	GGCGGA	1 cut(s)	447
Eco31I	GGTCTC	1 cut(s)	266
Eco81I	CCTNAGG	1 cut(s)	537
Eco88I	CYCGRG	1 cut(s)	464
Eco91I	GGTNACC	1 cut(s)	23
EcoNI	CCTNNNNNAGG	2 cut(s)	248, 540
EcoO65I	GGTNACC	1 cut(s)	23
EcoRII	CCWGG	4 cut(s)	249, 278, 288, 402
EcoT22I	ATGCAT	1 cut(s)	651
FaeI	CATG	2 cut(s)	487, 649
FaiI	YATR	5 cut(s)	230, 485, 647, 651, 664
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	2 cut(s)	483, 645
FblI	GTMKAC	1 cut(s)	528
FokI	GGATG	2 cut(s)	308, 566
FspBI	CTAG	1 cut(s)	360
GlaI	GCGC	4 cut(s)	377, 401, 518, 520
GsuI	CTGGAG	2 cut(s)	272, 335
HaeII	RGCGCY	1 cut(s)	403
HaeIII	GGCC	9 cut(s)	54, 96, 183, 189, 336, 366, 455, 462, 546
HapII	CCGG	1 cut(s)	225
HgaI	GACGC	1 cut(s)	174
HhaI	GCGC	4 cut(s)	378, 402, 519, 521
Hin1I	GRCGYC	1 cut(s)	166
Hin1II	CATG	2 cut(s)	487, 649
Hin6I	GCGC	4 cut(s)	376, 400, 517, 519
HinP1I	GCGC	4 cut(s)	376, 400, 517, 519
HpaII	CCGG	1 cut(s)	225
Hpy166II	GTNNAC	1 cut(s)	529
Hpy188I	TCNGA	2 cut(s)	298, 332
Hpy8I	GTNNAC	1 cut(s)	529
Hpy99I	CGWCG	2 cut(s)	144, 269
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	1 cut(s)	649
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 75, 379, 552
HpyF3I	CTNAG	4 cut(s)	513, 537, 584, 599
HpySE526I	ACGT	1 cut(s)	216
Hsp92I	GRCGYC	1 cut(s)	166
Hsp92II	CATG	2 cut(s)	487, 649
HspAI	GCGC	4 cut(s)	376, 400, 517, 519
KspI	CCGCGG	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	293, 318
LmnI	GCTCC	3 cut(s)	282, 394, 485
Lsp1109I	GCAGC	6 cut(s)	118, 133, 205, 219, 385, 409
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	2 cut(s)	295, 320
MboI	GATC	2 cut(s)	293, 318
MboII	GAAGA	3 cut(s)	211, 281, 610
MhlI	GDGCHC	2 cut(s)	384, 501
MluCI	AATT	4 cut(s)	8, 80, 113, 639
MmeI	TCCRAC	1 cut(s)	619
Mph1103I	ATGCAT	1 cut(s)	651
MspA1I	CMGCKG	1 cut(s)	186
MspI	CCGG	1 cut(s)	225
MspR9I	CCNGG	4 cut(s)	251, 280, 290, 404
MvaI	CCWGG	4 cut(s)	251, 280, 290, 404
MvnI	CGCG	3 cut(s)	186, 378, 519
MwoI	GCNNNNNNNGC	4 cut(s)	66, 75, 379, 552
NdeII	GATC	2 cut(s)	293, 318
NlaIII	CATG	2 cut(s)	487, 649
NlaIV	GGNNCC	2 cut(s)	284, 314
NmeAIII	GCCGAG	1 cut(s)	631
NsiI	ATGCAT	1 cut(s)	651
NspI	RCATGY	1 cut(s)	649
PaeR7I	CTCGAG	1 cut(s)	464
PauI	GCGCGC	1 cut(s)	517
Psp6I	CCWGG	4 cut(s)	249, 278, 288, 402
PspEI	GGTNACC	1 cut(s)	23
PspGI	CCWGG	4 cut(s)	249, 278, 288, 402
PspN4I	GGNNCC	2 cut(s)	284, 314
PspPI	GGNCC	1 cut(s)	181
PspXI	VCTCGAGB	1 cut(s)	464
PteI	GCGCGC	1 cut(s)	517
SacII	CCGCGG	1 cut(s)	187
Sau3AI	GATC	2 cut(s)	293, 318
Sau96I	GGNCC	1 cut(s)	181
ScrFI	CCNGG	4 cut(s)	251, 280, 290, 404
SduI	GDGCHC	2 cut(s)	384, 501
SetI	ASST	7 cut(s)	219, 342, 361, 408, 491, 576, 660
SfcI	CTRYAG	1 cut(s)	622
Sfr274I	CTCGAG	1 cut(s)	464
Sfr303I	CCGCGG	1 cut(s)	187
SgrBI	CCGCGG	1 cut(s)	187
SlaI	CTCGAG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	4 cut(s)	8, 80, 113, 639
SsiI	CCGC	7 cut(s)	67, 93, 184, 186, 276, 432, 452
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	4 cut(s)	249, 278, 288, 402
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	3 cut(s)	264, 342, 465
TasI	AATT	4 cut(s)	8, 80, 113, 639
TauI	GCSGC	4 cut(s)	96, 186, 189, 455
TscAI	CASTG	2 cut(s)	592, 607
TseI	GCWGC	6 cut(s)	106, 121, 193, 207, 373, 397
TspDTI	ATGAA	1 cut(s)	245
TspRI	CASTG	2 cut(s)	592, 607
XagI	CCTNNNNNAGG	2 cut(s)	248, 540
XapI	RAATTY	1 cut(s)	8
XceI	RCATGY	1 cut(s)	649
XhoI	CTCGAG	1 cut(s)	464
XmiI	GTMKAC	1 cut(s)	528
XspI	CTAG	1 cut(s)	360
Zsp2I	ATGCAT	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.