Rroxscaffold_3G00252330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000311
Physical Location & Seq
Reverse (-)
46343979 .. 46344849
871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00252330.1

Sequence Viewer

Length: 222 bp
ATGAAACTTGGCGAGCATGAAGAGTGGCTCAAAGTGCTTCTAATGGACCTGACTTTAAGACCGGAGGTGGCCGGAAATCGGTGTTGTCCAATTTGCTACAGTAAAAATGTTGGCTTCGATCTCCACATTTCCAGCCAAATCGCCGTAAACAACTCCCACATGCATGTTAAGGAGGAGGAGACGAGTCTATCGATGCTTGCAGCTCGCCATTTGGTGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

8.25

Weight (kDa)

6.16

Isoelectric Point (pI)

48.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000311)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis pycom05g18380 pycom05g18390
rosa_chinensis RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 214
AcoI YGGCCR 1 cut(s) 69
AfiI CCNNNNNNNGG 2 cut(s) 78, 214
AluBI AGCT 1 cut(s) 203
AluI AGCT 1 cut(s) 203
Alw26I GTCTC 1 cut(s) 173
AoxI GGCC 2 cut(s) 69, 216
ApeKI GCWGC 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 46
AvaII GGWCC 1 cut(s) 46
BbvI GCAGC 1 cut(s) 212
BceAI ACGGC 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 1 cut(s) 220
BfmI CTRYAG 1 cut(s) 97
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 46
BmsI GCATC 1 cut(s) 183
Bsa29I ATCGAT 1 cut(s) 191
BsaWI WCCGGW 1 cut(s) 61
Bsc4I CCNNNNNNNGG 2 cut(s) 78, 214
BseCI ATCGAT 1 cut(s) 191
BseLI CCNNNNNNNGG 2 cut(s) 78, 214
BseRI GAGGAG 2 cut(s) 188, 191
BseXI GCAGC 1 cut(s) 212
BshFI GGCC 2 cut(s) 71, 218
BshVI ATCGAT 1 cut(s) 191
BsiSI CCGG 2 cut(s) 62, 72
BslI CCNNNNNNNGG 2 cut(s) 78, 214
BsmAI GTCTC 1 cut(s) 173
BsmBI CGTCTC 1 cut(s) 173
BsnI GGCC 2 cut(s) 71, 218
Bsp143I GATC 1 cut(s) 118
BspANI GGCC 2 cut(s) 71, 218
BspDI ATCGAT 1 cut(s) 191
BssMI GATC 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 101
Bst6I CTCTTC 1 cut(s) 15
BstC8I GCNNGC 3 cut(s) 14, 198, 205
BstKTI GATC 1 cut(s) 121
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNSI RCATGY 2 cut(s) 163, 167
BstSFI CTRYAG 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 212
Bsu15I ATCGAT 1 cut(s) 191
BsuRI GGCC 2 cut(s) 71, 218
BsuTUI ATCGAT 1 cut(s) 191
Cac8I GCNNGC 3 cut(s) 14, 198, 205
Cfr13I GGNCC 1 cut(s) 46
ClaI ATCGAT 1 cut(s) 191
CviAII CATG 3 cut(s) 17, 160, 164
CviJI RGCY 6 cut(s) 28, 71, 114, 135, 203, 218
CviKI_1 RGCY 6 cut(s) 28, 71, 114, 135, 203, 218
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
EaeI YGGCCR 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 46
EcoT22I ATGCAT 1 cut(s) 165
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 3 cut(s) 20, 163, 167
FaiI YATR 3 cut(s) 18, 161, 165
FatI CATG 3 cut(s) 16, 159, 163
Fnu4HI GCNGC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 201
FspBI CTAG 1 cut(s) 220
GluI GCNGC 1 cut(s) 201
HaeIII GGCC 2 cut(s) 71, 218
HapII CCGG 2 cut(s) 62, 72
Hin1II CATG 3 cut(s) 20, 163, 167
HinfI GANTC 1 cut(s) 184
HpaII CCGG 2 cut(s) 62, 72
Hpy166II GTNNAC 1 cut(s) 148
Hpy8I GTNNAC 1 cut(s) 148
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4V TGCA 2 cut(s) 163, 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
Hsp92II CATG 3 cut(s) 20, 163, 167
Kzo9I GATC 1 cut(s) 118
LpnPI CCDG 4 cut(s) 62, 75, 85, 145
Lsp1109I GCAGC 1 cut(s) 212
LweI GCATC 1 cut(s) 183
MaeI CTAG 1 cut(s) 220
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 1 cut(s) 32
MluCI AATT 1 cut(s) 90
MlyI GAGTC 1 cut(s) 193
MnlI CCTC 3 cut(s) 58, 166, 169
Mph1103I ATGCAT 1 cut(s) 165
MseI TTAA 2 cut(s) 56, 168
MslI CAYNNNNRTG 1 cut(s) 162
MspI CCGG 2 cut(s) 62, 72
MwoI GCNNNNNNNGC 1 cut(s) 34
NdeII GATC 1 cut(s) 118
NlaIII CATG 3 cut(s) 20, 163, 167
NsiI ATGCAT 1 cut(s) 165
NspI RCATGY 2 cut(s) 163, 167
PcsI WCGNNNNNNNCGW 1 cut(s) 188
PflMI CCANNNNNTGG 1 cut(s) 214
PkrI GCNGC 1 cut(s) 202
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
PspPI GGNCC 1 cut(s) 46
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 2 cut(s) 56, 168
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 1 cut(s) 46
SchI GAGTC 1 cut(s) 193
SetI ASST 3 cut(s) 51, 69, 205
SfaNI GCATC 1 cut(s) 183
SfcI CTRYAG 1 cut(s) 97
SinI GGWCC 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 162
Sse9I AATT 1 cut(s) 90
SspMI CTAG 1 cut(s) 220
TaaI ACNGT 1 cut(s) 101
TaqI TCGA 2 cut(s) 117, 191
TasI AATT 1 cut(s) 90
Tru1I TTAA 2 cut(s) 56, 168
Tru9I TTAA 2 cut(s) 56, 168
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 2 cut(s) 17, 33
Van91I CCANNNNNTGG 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 46
XceI RCATGY 2 cut(s) 163, 167
XspI CTAG 1 cut(s) 220
Zsp2I ATGCAT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.