Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Forward (+)

53880915 .. 53887732

Gene Structure 6818 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG309700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1560 bp

ATGGCAAAGCATTTAGCTCTCGCCTTTTCTCTTTGCTTGCTTGTTCTCTTCCACGGCTGCTTAGCCAGACGCCAACAATCTCAGTCCAGCCAGCAAAATGAGTGCCAGCTGAACCAGATCCAAGCCCGCGAGCCTGACAACCGTATTGAGACTGAAGCAGGTCGGATTGAGTCATGGGACTACAACCAGGATGACTTGCAGTGCGCTGGTGTCGCTGTTCAAAGAATCACCATTGAGCGTAATGGCCTTCACTTGCCTTCTTACACTAACACTCCAAGGCTTGCATACGTTGTACAAGGTAGGGGTCATCTAGGGATGGTATTCCCTGGCTGTCCTGAGACATTTGAGGAGTCTGAGCAATCTGATGAAGAACAACAGGGTCAGCAACAACAATGGCAAGGCCAACAACGGGGCCGCCAGCAACAGGGACGCCGACAAGGACAATTCGGACAGCAAGGCCAACAAGGACAACAAGACTTTGAACAGCTAGACCGACACCAGAGGGTGCGACGTGTCAAAGAAGGTGATGTTATCGCAATCCCCGCCGGAGTCGCAACCTGGTCTCACAACGACGGTGACAAATCTCTTGTTTTTGTTACTCTTTTAGACATCGGCAATAACCACAACCAGCTTGACCAAAACCCAAGGCGATTTTATCTTGCTGGTAACCCACAAGATGAGTTCAACCAACAAGGCCAAAGCCAAAGGAGACGACAAGGACAACAAGGACAACAAGGAAGGAGCAGGCAGCAACGGCAGGGAAACAACAACAACAACATCTATGCCGGCTTCGAGACACAGCTCCTCGCCGACGCTCTCAACATCGACCAACAGACTGCCCAGCAGCTCCAGGGACAGAACGACAACAGGCCACAGATTGTTCGGGTTCAGGGACGTCTCGACTTTGTCGAGCCACCACGGTCACAGAGGGAGGAAAGACAACTGCAAGGACAACAAGGACAACAAGGACAACAAGGACAACAGGGACAGAATGGCCTTGAGGAGCTATTCTGCCACATGAAGATCAAGCAGAACATCGGCAAGCCTTCATTGGCCGACGTCTTCAGCCCGCAAGCCGGTCGCATCAGCACCCTCAACAGCTTTAGCCTGCCTATTCTCAGGCACCTTCGCCTCAGTGCTGAGAGAGGCATCTTGTACAACAATGCTATCCACAGCCCACACTGGAACTTGAATGCCCATGAGATCGTCTATGTCATCAGAGGTAGCGCCAGGGTTCAGGTGGTGAACGACAACGGCGAGACCATCTTGGACGACCAGGTCCGCCAGGGACAGCTCTTCGTCGTGCCACAGAACCACGCCGTGTTGCAGAAGGCCATGAGCAACGGATACGAGTACATTGCCTTCAAGACCGATGACAATGCCATGATCAACACTCTGGCTGGCAGGACCTCCGTCCTGCGGGCACTCCCCGACGTGGTCCTCGCCAACGCCTACCAGATGGACCGTGAGCAGGCAAGGAACCTCAAATACAACAGGCAGGAGACCCTTGCCTTGAGCTCCTCAAGGTCTTCCCAGTCACAGAGGTACTGGTGGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

519

Amino Acids

59.14

Weight (kDa)

7.72

Isoelectric Point (pI)

62.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	41 - 224	3.3e-27	Cupin
Cupin_1	PF00190	345 - 492	8e-41	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1277
AatII	GACGTC	2 cut(s)	898, 1062
Acc36I	ACCTGC	1 cut(s)	149
AccB1I	GGYRCC	1 cut(s)	1122
AccII	CGCG	1 cut(s)	129
AciI	CCGC	6 cut(s)	127, 415, 543, 1070, 1282, 1420
AclWI	GGATC	1 cut(s)	112
AcoI	YGGCCR	1 cut(s)	1053
AcuI	CTGAAG	2 cut(s)	174, 1048
AcyI	GRCGYC	4 cut(s)	70, 430, 895, 1059
AdeI	CACNNNGTG	1 cut(s)	1321
AfaI	GTAC	4 cut(s)	294, 1157, 1355, 1547
AfiI	CCNNNNNNNGG	6 cut(s)	409, 424, 1076, 1419, 1435, 1471
AflIII	ACRYGT	1 cut(s)	511
AgsI	TTSAA	5 cut(s)	221, 482, 685, 1192, 1366
AjiI	CACGTC	2 cut(s)	512, 1435
AjnI	CCWGG	7 cut(s)	186, 325, 557, 849, 1229, 1275, 1284
Alw21I	GWGCWC	1 cut(s)	1520
Alw26I	GTCTC	8 cut(s)	143, 332, 567, 703, 788, 902, 1253, 1496
AlwI	GGATC	1 cut(s)	112
AoxI	GGCC	9 cut(s)	244, 400, 412, 457, 694, 869, 994, 1053, 1332
ApeKI	GCWGC	3 cut(s)	57, 748, 844
AspLEI	GCGC	2 cut(s)	206, 1229
AspS9I	GGNCC	5 cut(s)	412, 1279, 1407, 1438, 1462
AsuHPI	GGTGA	4 cut(s)	220, 536, 587, 1255
AvaII	GGWCC	4 cut(s)	1279, 1407, 1438, 1462
BaeGI	GKGCMC	1 cut(s)	1426
BanI	GGYRCC	1 cut(s)	1122
BanII	GRGCYC	1 cut(s)	1520
BarI	GAAGNNNNNNTAC	2 cut(s)	1346, 1378
BbsI	GAAGAC	2 cut(s)	1054, 1521
Bbv12I	GWGCWC	1 cut(s)	1520
BbvI	GCAGC	3 cut(s)	44, 760, 856
BccI	CCATC	3 cut(s)	310, 1271, 1453
BceAI	ACGGC	4 cut(s)	70, 770, 1270, 1304
BcgI	CGANNNNNNTGC	6 cut(s)	1061, 1095, 1340, 1361, 1374, 1395
BciT130I	CCWGG	7 cut(s)	188, 327, 559, 851, 1231, 1277, 1286
BciVI	GTATCC	1 cut(s)	1340
BclI	TGATCA	1 cut(s)	1386
BcoDI	GTCTC	8 cut(s)	143, 332, 567, 703, 788, 902, 1253, 1496
BfaI	CTAG	2 cut(s)	311, 488
BfoI	RGCGCY	1 cut(s)	1230
BfuAI	ACCTGC	1 cut(s)	149
BfuI	GTATCC	1 cut(s)	1340
BisI	GCNGC	4 cut(s)	58, 415, 749, 845
BlpI	GCTNAGC	1 cut(s)	61
BlsI	GCNGC	4 cut(s)	59, 416, 750, 846
Bme1390I	CCNGG	7 cut(s)	188, 327, 559, 851, 1231, 1277, 1286
Bme18I	GGWCC	4 cut(s)	1279, 1407, 1438, 1462
BmgBI	CACGTC	2 cut(s)	512, 1435
BmgT120I	GGNCC	5 cut(s)	412, 1279, 1407, 1438, 1462
BmiI	GGNNCC	3 cut(s)	413, 1124, 1481
BmrFI	CCNGG	7 cut(s)	188, 327, 559, 851, 1231, 1277, 1286
BmrI	ACTGGG	1 cut(s)	1528
BmsI	GCATC	2 cut(s)	1092, 1158
BmuI	ACTGGG	1 cut(s)	1528
BoxI	GACNNNNGTC	1 cut(s)	1412
BpiI	GAAGAC	2 cut(s)	1054, 1521
BpmI	CTGGAG	1 cut(s)	833
Bpu1102I	GCTNAGC	1 cut(s)	61
BpuEI	CTTGAG	3 cut(s)	1019, 1507, 1534
BsaHI	GRCGYC	4 cut(s)	70, 430, 895, 1059
BsaI	GGTCTC	3 cut(s)	567, 1253, 1496
BsaJI	CCNNGG	8 cut(s)	52, 275, 325, 644, 850, 917, 1230, 1285
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bsc4I	CCNNNNNNNGG	6 cut(s)	409, 424, 1076, 1419, 1435, 1471
Bse118I	RCCGGY	2 cut(s)	785, 1076
Bse1I	ACTGG	3 cut(s)	1187, 1534, 1553
Bse3DI	GCAATG	1 cut(s)	1356
BseBI	CCWGG	7 cut(s)	188, 327, 559, 851, 1231, 1277, 1286
BseDI	CCNNGG	8 cut(s)	52, 275, 325, 644, 850, 917, 1230, 1285
BseGI	GGATG	2 cut(s)	196, 321
BseLI	CCNNNNNNNGG	6 cut(s)	409, 424, 1076, 1419, 1435, 1471
BseMI	GCAATG	1 cut(s)	1356
BseMII	CTCAG	6 cut(s)	95, 327, 345, 1131, 1132, 1147
BseNI	ACTGG	3 cut(s)	1187, 1534, 1553
BseRI	GAGGAG	4 cut(s)	362, 794, 1016, 1510
BseSI	GKGCMC	1 cut(s)	1426
BseXI	GCAGC	3 cut(s)	44, 760, 856
BseYI	CCCAGC	1 cut(s)	840
Bsh1236I	CGCG	1 cut(s)	129
Bsh1285I	CGRYCG	1 cut(s)	1081
BshFI	GGCC	9 cut(s)	246, 402, 414, 459, 696, 871, 996, 1055, 1334
BshNI	GGYRCC	1 cut(s)	1122
BsiEI	CGRYCG	1 cut(s)	1081
BsiHKAI	GWGCWC	1 cut(s)	1520
BsiSI	CCGG	3 cut(s)	546, 786, 1077
BslFI	GGGAC	6 cut(s)	191, 441, 867, 906, 999, 1302
BslI	CCNNNNNNNGG	6 cut(s)	409, 424, 1076, 1419, 1435, 1471
BsmAI	GTCTC	8 cut(s)	143, 332, 567, 703, 788, 902, 1253, 1496
BsmBI	CGTCTC	2 cut(s)	703, 902
BsmFI	GGGAC	6 cut(s)	191, 441, 867, 906, 999, 1302
BsmI	GAATGC	1 cut(s)	1198
BsnI	GGCC	9 cut(s)	246, 402, 414, 459, 696, 871, 996, 1055, 1334
Bso31I	GGTCTC	3 cut(s)	567, 1253, 1496
Bsp1286I	GDGCHC	2 cut(s)	1426, 1520
Bsp1407I	TGTACA	2 cut(s)	292, 1155
Bsp143I	GATC	4 cut(s)	117, 1023, 1203, 1386
Bsp1720I	GCTNAGC	1 cut(s)	61
BspACI	CCGC	6 cut(s)	127, 415, 543, 1070, 1282, 1420
BspANI	GGCC	9 cut(s)	246, 402, 414, 459, 696, 871, 996, 1055, 1334
BspCNI	CTCAG	6 cut(s)	94, 328, 346, 1131, 1132, 1146
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	3 cut(s)	413, 1124, 1481
BspMI	ACCTGC	1 cut(s)	149
BspPI	GGATC	1 cut(s)	112
BspQI	GCTCTTC	1 cut(s)	1301
BspT107I	GGYRCC	1 cut(s)	1122
BspTNI	GGTCTC	3 cut(s)	567, 1253, 1496
BsrDI	GCAATG	1 cut(s)	1356
BsrFI	RCCGGY	2 cut(s)	785, 1076
BsrGI	TGTACA	2 cut(s)	292, 1155
BsrI	ACTGG	3 cut(s)	1187, 1534, 1553
BssAI	RCCGGY	2 cut(s)	785, 1076
BssECI	CCNNGG	8 cut(s)	52, 275, 325, 644, 850, 917, 1230, 1285
BssMI	GATC	4 cut(s)	117, 1023, 1203, 1386
BssNI	GRCGYC	4 cut(s)	70, 430, 895, 1059
BssT1I	CCWWGG	2 cut(s)	275, 644
Bst2UI	CCWGG	7 cut(s)	188, 327, 559, 851, 1231, 1277, 1286
Bst4CI	ACNGT	4 cut(s)	143, 575, 921, 1466
Bst6I	CTCTTC	2 cut(s)	53, 1301
BstACI	GRCGYC	4 cut(s)	70, 430, 895, 1059
BstAUI	TGTACA	2 cut(s)	292, 1155
BstDEI	CTNAG	7 cut(s)	61, 81, 336, 354, 1118, 1133, 1140
BstDSI	CCRYGG	2 cut(s)	52, 917
BstEII	GGTNACC	1 cut(s)	665
BstF5I	GGATG	2 cut(s)	196, 321
BstFNI	CGCG	1 cut(s)	129
BstH2I	RGCGCY	1 cut(s)	1230
BstHHI	GCGC	2 cut(s)	206, 1229
BstKTI	GATC	4 cut(s)	120, 1026, 1206, 1389
BstMAI	GTCTC	8 cut(s)	143, 332, 567, 703, 788, 902, 1253, 1496
BstMBI	GATC	4 cut(s)	117, 1023, 1203, 1386
BstMCI	CGRYCG	1 cut(s)	1081
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 542, 551, 754
BstNI	CCWGG	7 cut(s)	188, 327, 559, 851, 1231, 1277, 1286
BstPAI	GACNNNNGTC	1 cut(s)	1412
BstPI	GGTNACC	1 cut(s)	665
BstSCI	CCNGG	7 cut(s)	186, 325, 557, 849, 1229, 1275, 1284
BstSLI	GKGCMC	1 cut(s)	1426
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	3 cut(s)	44, 760, 856
BstV2I	GAAGAC	2 cut(s)	1054, 1521
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	1340
BsuRI	GGCC	9 cut(s)	246, 402, 414, 459, 696, 871, 996, 1055, 1334
BtgI	CCRYGG	2 cut(s)	52, 917
BtrI	CACGTC	2 cut(s)	512, 1435
BtsCI	GGATG	2 cut(s)	196, 321
BtsI	GCAGTG	1 cut(s)	206
BtsIMutI	CAGTG	3 cut(s)	206, 1141, 1180
BveI	ACCTGC	1 cut(s)	149
CfoI	GCGC	2 cut(s)	206, 1229
Cfr10I	RCCGGY	2 cut(s)	785, 1076
Cfr13I	GGNCC	5 cut(s)	412, 1279, 1407, 1438, 1462
CseI	GACGC	3 cut(s)	78, 438, 821
CsiI	ACCWGGT	2 cut(s)	557, 1275
Csp6I	GTAC	4 cut(s)	293, 1156, 1354, 1546
CviAII	CATG	5 cut(s)	174, 1018, 1199, 1336, 1384
CviQI	GTAC	4 cut(s)	293, 1156, 1354, 1546
DdeI	CTNAG	7 cut(s)	61, 81, 336, 354, 1118, 1133, 1140
DpnI	GATC	4 cut(s)	119, 1025, 1205, 1388
DpnII	GATC	4 cut(s)	117, 1023, 1203, 1386
DraIII	CACNNNGTG	1 cut(s)	1321
DrdI	GACNNNNNNGTC	1 cut(s)	1277
DseDI	GACNNNNNNGTC	1 cut(s)	1277
EaeI	YGGCCR	1 cut(s)	1053
Eam1104I	CTCTTC	2 cut(s)	53, 1301
EarI	CTCTTC	2 cut(s)	53, 1301
EciI	GGCGGA	1 cut(s)	1271
Ecl136II	GAGCTC	1 cut(s)	1518
Eco130I	CCWWGG	2 cut(s)	275, 644
Eco24I	GRGCYC	1 cut(s)	1520
Eco31I	GGTCTC	3 cut(s)	567, 1253, 1496
Eco47I	GGWCC	4 cut(s)	1279, 1407, 1438, 1462
Eco53kI	GAGCTC	1 cut(s)	1518
Eco57I	CTGAAG	2 cut(s)	174, 1048
Eco91I	GGTNACC	1 cut(s)	665
EcoICRI	GAGCTC	1 cut(s)	1518
EcoO109I	RGGNCCY	1 cut(s)	1407
EcoO65I	GGTNACC	1 cut(s)	665
EcoRII	CCWGG	7 cut(s)	186, 325, 557, 849, 1229, 1275, 1284
EcoT14I	CCWWGG	2 cut(s)	275, 644
EcoT38I	GRGCYC	1 cut(s)	1520
ErhI	CCWWGG	2 cut(s)	275, 644
Esp3I	CGTCTC	2 cut(s)	703, 902
FaeI	CATG	5 cut(s)	177, 1021, 1202, 1339, 1387
FaiI	YATR	8 cut(s)	175, 286, 783, 1019, 1200, 1212, 1337, 1385
FaqI	GGGAC	6 cut(s)	191, 441, 867, 906, 999, 1302
FatI	CATG	5 cut(s)	173, 1017, 1198, 1335, 1383
FauI	CCCGC	4 cut(s)	134, 550, 1077, 1413
FbaI	TGATCA	1 cut(s)	1386
Fnu4HI	GCNGC	4 cut(s)	58, 415, 749, 845
FokI	GGATG	2 cut(s)	203, 328
FriOI	GRGCYC	1 cut(s)	1520
Fsp4HI	GCNGC	4 cut(s)	58, 415, 749, 845
FspBI	CTAG	2 cut(s)	311, 488
GlaI	GCGC	2 cut(s)	205, 1228
GluI	GCNGC	4 cut(s)	58, 415, 749, 845
GsaI	CCCAGC	1 cut(s)	844
GsuI	CTGGAG	1 cut(s)	833
HaeII	RGCGCY	1 cut(s)	1230
HaeIII	GGCC	9 cut(s)	246, 402, 414, 459, 696, 871, 996, 1055, 1334
HapII	CCGG	3 cut(s)	546, 786, 1077
HgaI	GACGC	3 cut(s)	78, 438, 821
HhaI	GCGC	2 cut(s)	206, 1229
Hin1I	GRCGYC	4 cut(s)	70, 430, 895, 1059
Hin1II	CATG	5 cut(s)	177, 1021, 1202, 1339, 1387
Hin6I	GCGC	2 cut(s)	204, 1227
HinP1I	GCGC	2 cut(s)	204, 1227
HinfI	GANTC	4 cut(s)	170, 225, 350, 549
HpaII	CCGG	3 cut(s)	546, 786, 1077
HphI	GGTGA	4 cut(s)	220, 536, 587, 1255
Hpy166II	GTNNAC	1 cut(s)	1246
Hpy188I	TCNGA	5 cut(s)	165, 355, 364, 449, 1220
Hpy188III	TCNNGA	4 cut(s)	335, 793, 899, 1366
Hpy8I	GTNNAC	1 cut(s)	1246
Hpy99I	CGWCG	6 cut(s)	513, 575, 815, 1061, 1304, 1436
HpyAV	CCTTC	8 cut(s)	257, 267, 515, 732, 1056, 1136, 1324, 1372
HpyCH4III	ACNGT	4 cut(s)	143, 575, 921, 1466
HpyCH4IV	ACGT	5 cut(s)	288, 511, 895, 1059, 1434
HpyCH4V	TGCA	4 cut(s)	199, 284, 946, 1327
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 542, 551, 754
HpyF3I	CTNAG	7 cut(s)	61, 81, 336, 354, 1118, 1133, 1140
HpySE526I	ACGT	5 cut(s)	288, 511, 895, 1059, 1434
Hsp92I	GRCGYC	4 cut(s)	70, 430, 895, 1059
Hsp92II	CATG	5 cut(s)	177, 1021, 1202, 1339, 1387
HspAI	GCGC	2 cut(s)	204, 1227
KroI	GCCGGC	1 cut(s)	785
KroNI	GCCGGC	1 cut(s)	787
Ksp22I	TGATCA	1 cut(s)	1386
Kzo9I	GATC	4 cut(s)	117, 1023, 1203, 1386
LguI	GCTCTTC	1 cut(s)	1301
LmnI	GCTCC	5 cut(s)	741, 807, 852, 1003, 1523
Lsp1109I	GCAGC	3 cut(s)	44, 760, 856
LweI	GCATC	2 cut(s)	1092, 1158
MabI	ACCWGGT	2 cut(s)	557, 1275
MaeI	CTAG	2 cut(s)	311, 488
MaeII	ACGT	5 cut(s)	288, 511, 895, 1059, 1434
MaeIII	GTNAC	5 cut(s)	575, 595, 665, 921, 1536
MalI	GATC	4 cut(s)	119, 1025, 1205, 1388
MboI	GATC	4 cut(s)	117, 1023, 1203, 1386
MboII	GAAGA	6 cut(s)	40, 380, 1033, 1054, 1288, 1521
MflI	RGATCY	1 cut(s)	117
MhlI	GDGCHC	2 cut(s)	1426, 1520
MluCI	AATT	1 cut(s)	443
MlyI	GAGTC	3 cut(s)	179, 359, 558
MmeI	TCCRAC	1 cut(s)	143
MroNI	GCCGGC	1 cut(s)	785
MspA1I	CMGCKG	1 cut(s)	109
MspI	CCGG	3 cut(s)	546, 786, 1077
MspR9I	CCNGG	7 cut(s)	188, 327, 559, 851, 1231, 1277, 1286
Mva1269I	GAATGC	1 cut(s)	1198
MvaI	CCWGG	7 cut(s)	188, 327, 559, 851, 1231, 1277, 1286
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	4 cut(s)	212, 542, 551, 754
NaeI	GCCGGC	1 cut(s)	787
NdeII	GATC	4 cut(s)	117, 1023, 1203, 1386
NgoMIV	GCCGGC	1 cut(s)	785
NlaIII	CATG	5 cut(s)	177, 1021, 1202, 1339, 1387
NlaIV	GGNNCC	3 cut(s)	413, 1124, 1481
NmuCI	GTSAC	3 cut(s)	575, 921, 1536
PciSI	GCTCTTC	1 cut(s)	1301
PcsI	WCGNNNNNNNCGW	2 cut(s)	906, 1254
PctI	GAATGC	1 cut(s)	1198
PdiI	GCCGGC	1 cut(s)	787
PfeI	GAWTC	1 cut(s)	225
PflFI	GACNNNGTC	3 cut(s)	905, 1277, 1436
PkrI	GCNGC	4 cut(s)	59, 416, 750, 846
PleI	GAGTC	3 cut(s)	178, 358, 557
PpsI	GAGTC	3 cut(s)	178, 358, 557
PpuMI	RGGWCCY	1 cut(s)	1407
PshAI	GACNNNNGTC	1 cut(s)	1412
Psp124BI	GAGCTC	1 cut(s)	1520
Psp5II	RGGWCCY	1 cut(s)	1407
Psp6I	CCWGG	7 cut(s)	186, 325, 557, 849, 1229, 1275, 1284
PspEI	GGTNACC	1 cut(s)	665
PspFI	CCCAGC	1 cut(s)	840
PspGI	CCWGG	7 cut(s)	186, 325, 557, 849, 1229, 1275, 1284
PspN4I	GGNNCC	3 cut(s)	413, 1124, 1481
PspPI	GGNCC	5 cut(s)	412, 1279, 1407, 1438, 1462
PspPPI	RGGWCCY	1 cut(s)	1407
PsrI	GAACNNNNNNTAC	2 cut(s)	1472, 1504
PsuI	RGATCY	1 cut(s)	117
PsyI	GACNNNGTC	3 cut(s)	905, 1277, 1436
PvuII	CAGCTG	1 cut(s)	109
RsaI	GTAC	4 cut(s)	294, 1157, 1355, 1547
RsaNI	GTAC	4 cut(s)	293, 1156, 1354, 1546
SacI	GAGCTC	1 cut(s)	1520
SapI	GCTCTTC	1 cut(s)	1301
SatI	GCNGC	4 cut(s)	58, 415, 749, 845
Sau3AI	GATC	4 cut(s)	117, 1023, 1203, 1386
Sau96I	GGNCC	5 cut(s)	412, 1279, 1407, 1438, 1462
SchI	GAGTC	3 cut(s)	179, 359, 558
ScrFI	CCNGG	7 cut(s)	188, 327, 559, 851, 1231, 1277, 1286
SduI	GDGCHC	2 cut(s)	1426, 1520
SexAI	ACCWGGT	2 cut(s)	557, 1275
SfaNI	GCATC	2 cut(s)	1092, 1158
SinI	GGWCC	4 cut(s)	1279, 1407, 1438, 1462
SmlI	CTYRAG	3 cut(s)	998, 1513, 1522
SmoI	CTYRAG	3 cut(s)	998, 1513, 1522
Sse9I	AATT	1 cut(s)	443
SsiI	CCGC	6 cut(s)	127, 415, 543, 1070, 1282, 1420
SspMI	CTAG	2 cut(s)	311, 488
SstI	GAGCTC	1 cut(s)	1520
StyD4I	CCNGG	7 cut(s)	186, 325, 557, 849, 1229, 1275, 1284
StyI	CCWWGG	2 cut(s)	275, 644
TaaI	ACNGT	4 cut(s)	143, 575, 921, 1466
TaiI	ACGT	5 cut(s)	291, 514, 898, 1062, 1437
TaqI	TCGA	4 cut(s)	792, 825, 900, 909
TaqII	GACCGA	2 cut(s)	507, 1385
TasI	AATT	1 cut(s)	443
TatI	WGTACW	3 cut(s)	292, 1155, 1353
TauI	GCSGC	1 cut(s)	417
TfiI	GAWTC	1 cut(s)	225
TscAI	CASTG	3 cut(s)	206, 1141, 1187
TseFI	GTSAC	3 cut(s)	575, 921, 1536
TseI	GCWGC	3 cut(s)	57, 748, 844
Tsp45I	GTSAC	3 cut(s)	575, 921, 1536
TspDTI	ATGAA	3 cut(s)	381, 1034, 1038
TspGWI	ACGGA	2 cut(s)	1359, 1402
TspRI	CASTG	3 cut(s)	206, 1141, 1187
Tth111I	GACNNNGTC	3 cut(s)	905, 1277, 1436
VpaK11BI	GGWCC	4 cut(s)	1279, 1407, 1438, 1462
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1237
XspI	CTAG	2 cut(s)	311, 488
ZraI	GACGTC	2 cut(s)	896, 1060

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.