Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Forward (+)

50289831 .. 50292073

Gene Structure 2243 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG302100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1656 bp

ATGAGATTCCTTACACATCATTCGTGCTTCTCTCTCCCTTACATCCTCTACTCTCCTATAAATACTAACAGTCTACTCGCCGCTTCACCGCAACCCACAACTAGCTATCTGCCACTGATCATCACTATGGCCAAGCATTTAGCTCTCGTTTTCTCTCTCTGCTTTATTGTTCTCTTCCACGGCTGCTTAGCCAGTCGCCAACAATCTCAGTTCAGCCAGCAAAATGAGTGCCAGCTGAACCAGATCCAAGCCCGCGAGCCCGACAACCGCATTGAGTGCGAAGCAGGTCGGATCGAGTCCTGGGACTACAACCAGGATGACTTCCAGTGCGCTGGTGTCGCCGTTCAGAGAATCACCATTGAGAGCAACGGCCTTCACTTGCCATCTTACACTAACACCCCACGACTAGTTTACGTCGTCCAAGGTTGGGGTCATGTAGGAATGGTGCTCCCTGGCTGTCCCGAGACTTTTGAAGAATCGGAGCAATCTGATGAGGAACAACAGGGCCAGGAACAACAAGGGCAAGGCCAACGAGGCCGCCAGCAACAGGGACGCCGACAGGGACAACAAGAGAGCTTTGAGCAGCTAGACCGTCACCAGAGGGTCCGACGCGTCAAGGAAGGTGATGTCATTGCCGTCCCCGCTGGAGTCACCTGCTGGACTCACAACCACGGTAACCAACCTCTTGTTTTTGTCAGTCTTTTTGATATGAGCAACAAGCGCAACCAGCTTGACCAAAACCCAAGGAAATTCTATCTTGCTGGTAACCCACAAGATGAGTTCAACCAACAAGGCCAAAGCCAATGGGGACAACAAGGACAACAAGGCCGTGGACAACAAGGAAGGACCAGGCGCCAACAGCAGGGAAACAACAACAACAACATCTTTGCCGGCTTCGACACACAGCTCCTCGCCGACGCTCTCAACATCGACCAACAGACCGCCCAGCGGCTCCAGGGACAGAACGACAACAGGCCACAGATTGTTAGGGTTCAGGGACGTTTCGACTTTGTCGAGCCACCACGATCACAGAGGGAGGAAAGACAAATGCAGGGACAAAAAGGACAGTATGAACAGAATGGCATGGAGGAGCTCTTCTGTCACATGAAGATGAAACAGAACATTGGCAAACCTAAAATGGCCGACGTCTACAGCCCGCAAGCCGGTCGCATCAGCACCCTCAACAGCTTCAGCATGCCTATTCTCAGGCGCCTCCGCCTCAGTGCCGAGAGAGGCTTCTTCTACAACAACGCTATCTACAGCCCACACTGGAACTTGAACGCCCATGAAGTCTACTACGTCATCAGGGGCAGCGCTAGGGTTCAGGTGGTGAACGACAATGGCGAGACCATCTTGGACGACCAGGTCCGGCAGGGACAGCTCTTCATCGTGCCACAGAACCACGCCGTGTTGCAAAAGGCCATGAGCAACGGATACGAGTACATTGCCTTCAAGACCGATGACAATGCCATGATGAACACCATGGCTGGCAGGACCTCCGTCCTGCGGGCACTCCCCGACGTGGTCCTCGCCAACGCCTACCAGATGGACCGTGAGCAGGCAAGGAACCTCAAGTACAACAGGCAGGAGACCGTTGCTTTGAGCTCCTCAAGGTCTTCCCGGTCCCAGAGGAACTGGTGGCCTCTTGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

551

Amino Acids

63.14

Weight (kDa)

8.31

Isoelectric Point (pI)

59.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	83 - 257	1.1e-26	Cupin
Cupin_1	PF00190	374 - 521	2.1e-38	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	662
AasI	GACNNNNNNGTC	1 cut(s)	1364
AatII	GACGTC	1 cut(s)	1149
Acc36I	ACCTGC	2 cut(s)	275, 662
AccB1I	GGYRCC	2 cut(s)	852, 1209
AccI	GTMKAC	3 cut(s)	73, 1149, 1293
AccII	CGCG	2 cut(s)	255, 612
AclWI	GGATC	2 cut(s)	238, 299
AcoI	YGGCCR	2 cut(s)	129, 1140
AcsI	RAATTY	1 cut(s)	749
AcuI	CTGAAG	1 cut(s)	1174
AcyI	GRCGYC	4 cut(s)	553, 853, 1146, 1210
AdeI	CACNNNGTG	1 cut(s)	1408
AfaI	GTAC	2 cut(s)	1442, 1577
AfeI	AGCGCT	1 cut(s)	1315
AfiI	CCNNNNNNNGG	8 cut(s)	427, 547, 862, 948, 1163, 1506, 1522, 1558
AflIII	ACRYGT	1 cut(s)	610
AgsI	TTSAA	4 cut(s)	473, 784, 1279, 1453
AhlI	ACTAGT	1 cut(s)	406
AjiI	CACGTC	1 cut(s)	1522
AjnI	CCWGG	7 cut(s)	299, 312, 451, 507, 848, 954, 1362
Alw21I	GWGCWC	3 cut(s)	450, 1095, 1607
Alw26I	GTCTC	3 cut(s)	458, 1340, 1583
AlwI	GGATC	2 cut(s)	238, 299
Ama87I	CYCGRG	1 cut(s)	461
Aor51HI	AGCGCT	1 cut(s)	1315
ApeKI	GCWGC	3 cut(s)	183, 583, 1311
ApoI	RAATTY	1 cut(s)	749
ArsI	GACNNNNNNTTYG	2 cut(s)	1582, 1614
AspLEI	GCGC	5 cut(s)	332, 723, 855, 1212, 1316
AspS9I	GGNCC	8 cut(s)	505, 604, 846, 1366, 1494, 1525, 1549, 1623
AsuC2I	CCSGG	1 cut(s)	1621
AsuHPI	GGTGA	6 cut(s)	78, 346, 587, 635, 643, 1342
AvaI	CYCGRG	1 cut(s)	461
AvaII	GGWCC	7 cut(s)	604, 846, 1366, 1494, 1525, 1549, 1623
BaeGI	GKGCMC	1 cut(s)	1513
BalI	TGGCCA	1 cut(s)	131
BanI	GGYRCC	2 cut(s)	852, 1209
BanII	GRGCYC	3 cut(s)	261, 1095, 1607
BarI	GAAGNNNNNNTAC	2 cut(s)	1433, 1465
BbsI	GAAGAC	1 cut(s)	1608
Bbv12I	GWGCWC	3 cut(s)	450, 1095, 1607
BbvI	GCAGC	3 cut(s)	170, 595, 1323
BccI	CCATC	3 cut(s)	391, 1358, 1540
BceAI	ACGGC	6 cut(s)	196, 326, 385, 620, 813, 1391
BcgI	CGANNNNNNTGC	6 cut(s)	1148, 1182, 1427, 1448, 1461, 1482
BciT130I	CCWGG	7 cut(s)	301, 314, 453, 509, 850, 956, 1364
BciVI	GTATCC	1 cut(s)	1427
BclI	TGATCA	1 cut(s)	117
BcnI	CCSGG	1 cut(s)	1621
BcoDI	GTCTC	3 cut(s)	458, 1340, 1583
BcuI	ACTAGT	1 cut(s)	406
BfaI	CTAG	4 cut(s)	102, 407, 587, 1317
BfmI	CTRYAG	2 cut(s)	1150, 1258
BfoI	RGCGCY	3 cut(s)	856, 1213, 1317
BfuAI	ACCTGC	2 cut(s)	275, 662
BfuI	GTATCC	1 cut(s)	1427
BglI	GCCNNNNNGGC	1 cut(s)	534
BisI	GCNGC	6 cut(s)	81, 184, 538, 584, 950, 1312
BlpI	GCTNAGC	1 cut(s)	187
BlsI	GCNGC	6 cut(s)	82, 185, 539, 585, 951, 1313
Bme1390I	CCNGG	8 cut(s)	301, 314, 453, 509, 850, 956, 1364, 1621
Bme18I	GGWCC	7 cut(s)	604, 846, 1366, 1494, 1525, 1549, 1623
BmeT110I	CYCGRG	1 cut(s)	461
BmgBI	CACGTC	1 cut(s)	1522
BmgT120I	GGNCC	8 cut(s)	505, 604, 846, 1366, 1494, 1525, 1549, 1623
BmiI	GGNNCC	6 cut(s)	605, 854, 953, 1211, 1568, 1625
BmrFI	CCNGG	8 cut(s)	301, 314, 453, 509, 850, 956, 1364, 1621
BmsI	GCATC	2 cut(s)	1179, 1639
BoxI	GACNNNNGTC	1 cut(s)	1499
BpiI	GAAGAC	1 cut(s)	1608
BpmI	CTGGAG	2 cut(s)	666, 938
Bpu1102I	GCTNAGC	1 cut(s)	187
BpuEI	CTTGAG	2 cut(s)	1556, 1594
BpuMI	CCSGG	1 cut(s)	1621
BsaHI	GRCGYC	4 cut(s)	553, 853, 1146, 1210
BsaI	GGTCTC	2 cut(s)	1340, 1583
BsaJI	CCNNGG	9 cut(s)	178, 300, 421, 451, 670, 743, 829, 955, 1482
Bsc4I	CCNNNNNNNGG	8 cut(s)	427, 547, 862, 948, 1163, 1506, 1522, 1558
Bse118I	RCCGGY	2 cut(s)	890, 1163
Bse1I	ACTGG	4 cut(s)	192, 325, 1274, 1640
Bse3DI	GCAATG	2 cut(s)	630, 1443
BseBI	CCWGG	7 cut(s)	301, 314, 453, 509, 850, 956, 1364
BseDI	CCNNGG	9 cut(s)	178, 300, 421, 451, 670, 743, 829, 955, 1482
BseGI	GGATG	2 cut(s)	42, 322
BseLI	CCNNNNNNNGG	8 cut(s)	427, 547, 862, 948, 1163, 1506, 1522, 1558
BseMI	GCAATG	2 cut(s)	630, 1443
BseMII	CTCAG	3 cut(s)	221, 1219, 1234
BseNI	ACTGG	4 cut(s)	192, 325, 1274, 1640
BseRI	GAGGAG	3 cut(s)	899, 1103, 1597
BseSI	GKGCMC	1 cut(s)	1513
BseXI	GCAGC	3 cut(s)	170, 595, 1323
BseYI	CCCAGC	1 cut(s)	945
Bsh1236I	CGCG	2 cut(s)	255, 612
Bsh1285I	CGRYCG	1 cut(s)	1168
BshNI	GGYRCC	2 cut(s)	852, 1209
BsiEI	CGRYCG	1 cut(s)	1168
BsiHKAI	GWGCWC	3 cut(s)	450, 1095, 1607
BsiHKCI	CYCGRG	1 cut(s)	461
BsiSI	CCGG	4 cut(s)	891, 1164, 1369, 1621
BslI	CCNNNNNNNGG	8 cut(s)	427, 547, 862, 948, 1163, 1506, 1522, 1558
BsmAI	GTCTC	3 cut(s)	458, 1340, 1583
Bso31I	GGTCTC	2 cut(s)	1340, 1583
BsoBI	CYCGRG	1 cut(s)	461
Bsp1286I	GDGCHC	5 cut(s)	261, 450, 1095, 1513, 1607
Bsp143I	GATC	4 cut(s)	117, 243, 291, 1025
Bsp1720I	GCTNAGC	1 cut(s)	187
Bsp19I	CCATGG	1 cut(s)	1482
BspCNI	CTCAG	3 cut(s)	220, 1218, 1233
BspFNI	CGCG	2 cut(s)	255, 612
BspLI	GGNNCC	6 cut(s)	605, 854, 953, 1211, 1568, 1625
BspMI	ACCTGC	2 cut(s)	275, 662
BspPI	GGATC	2 cut(s)	238, 299
BspQI	GCTCTTC	2 cut(s)	1100, 1388
BspT107I	GGYRCC	2 cut(s)	852, 1209
BspTNI	GGTCTC	2 cut(s)	1340, 1583
BsrDI	GCAATG	2 cut(s)	630, 1443
BsrFI	RCCGGY	2 cut(s)	890, 1163
BsrI	ACTGG	4 cut(s)	192, 325, 1274, 1640
BssAI	RCCGGY	2 cut(s)	890, 1163
BssECI	CCNNGG	9 cut(s)	178, 300, 421, 451, 670, 743, 829, 955, 1482
BssMI	GATC	4 cut(s)	117, 243, 291, 1025
BssNI	GRCGYC	4 cut(s)	553, 853, 1146, 1210
BssT1I	CCWWGG	3 cut(s)	421, 743, 1482
Bst2UI	CCWGG	7 cut(s)	301, 314, 453, 509, 850, 956, 1364
Bst4CI	ACNGT	6 cut(s)	71, 593, 674, 1068, 1553, 1594
Bst6I	CTCTTC	3 cut(s)	179, 1100, 1388
BstACI	GRCGYC	4 cut(s)	553, 853, 1146, 1210
BstAPI	GCANNNNNTGC	1 cut(s)	276
BstDEI	CTNAG	4 cut(s)	187, 207, 1205, 1220
BstDSI	CCRYGG	4 cut(s)	178, 670, 829, 1482
BstEII	GGTNACC	2 cut(s)	674, 764
BstF5I	GGATG	2 cut(s)	42, 322
BstFNI	CGCG	2 cut(s)	255, 612
BstH2I	RGCGCY	3 cut(s)	856, 1213, 1317
BstHHI	GCGC	5 cut(s)	332, 723, 855, 1212, 1316
BstKTI	GATC	4 cut(s)	120, 246, 294, 1028
BstMAI	GTCTC	3 cut(s)	458, 1340, 1583
BstMBI	GATC	4 cut(s)	117, 243, 291, 1025
BstMCI	CGRYCG	1 cut(s)	1168
BstMWI	GCNNNNNNNGC	8 cut(s)	276, 338, 534, 641, 720, 727, 859, 1378
BstNI	CCWGG	7 cut(s)	301, 314, 453, 509, 850, 956, 1364
BstNSI	RCATGY	1 cut(s)	1198
BstPAI	GACNNNNGTC	1 cut(s)	1499
BstPI	GGTNACC	2 cut(s)	674, 764
BstSCI	CCNGG	8 cut(s)	299, 312, 451, 507, 848, 954, 1362, 1619
BstSFI	CTRYAG	2 cut(s)	1150, 1258
BstSLI	GKGCMC	1 cut(s)	1513
BstUI	CGCG	2 cut(s)	255, 612
BstV1I	GCAGC	3 cut(s)	170, 595, 1323
BstV2I	GAAGAC	1 cut(s)	1608
BstX2I	RGATCY	1 cut(s)	243
BstXI	CCANNNNNNTGG	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	243
BsuI	GTATCC	1 cut(s)	1427
BtgI	CCRYGG	4 cut(s)	178, 670, 829, 1482
BtrI	CACGTC	1 cut(s)	1522
BtsCI	GGATG	2 cut(s)	42, 322
BtsIMutI	CAGTG	4 cut(s)	113, 332, 1228, 1267
BveI	ACCTGC	2 cut(s)	275, 662
CfoI	GCGC	5 cut(s)	332, 723, 855, 1212, 1316
Cfr10I	RCCGGY	2 cut(s)	890, 1163
Cfr13I	GGNCC	8 cut(s)	505, 604, 846, 1366, 1494, 1525, 1549, 1623
CseI	GACGC	4 cut(s)	561, 601, 618, 926
CsiI	ACCWGGT	1 cut(s)	1362
Csp6I	GTAC	2 cut(s)	1441, 1576
CviAII	CATG	8 cut(s)	434, 1084, 1105, 1195, 1286, 1423, 1471, 1483
CviQI	GTAC	2 cut(s)	1441, 1576
DdeI	CTNAG	4 cut(s)	187, 207, 1205, 1220
DinI	GGCGCC	2 cut(s)	854, 1211
DpnI	GATC	4 cut(s)	119, 245, 293, 1027
DpnII	GATC	4 cut(s)	117, 243, 291, 1025
DraIII	CACNNNGTG	1 cut(s)	1408
DrdI	GACNNNNNNGTC	1 cut(s)	1364
DseDI	GACNNNNNNGTC	1 cut(s)	1364
EaeI	YGGCCR	2 cut(s)	129, 1140
Eam1104I	CTCTTC	3 cut(s)	179, 1100, 1388
EarI	CTCTTC	3 cut(s)	179, 1100, 1388
EciI	GGCGGA	1 cut(s)	1205
Ecl136II	GAGCTC	2 cut(s)	1093, 1605
Eco130I	CCWWGG	3 cut(s)	421, 743, 1482
Eco24I	GRGCYC	3 cut(s)	261, 1095, 1607
Eco31I	GGTCTC	2 cut(s)	1340, 1583
Eco47I	GGWCC	7 cut(s)	604, 846, 1366, 1494, 1525, 1549, 1623
Eco47III	AGCGCT	1 cut(s)	1315
Eco53kI	GAGCTC	2 cut(s)	1093, 1605
Eco57I	CTGAAG	1 cut(s)	1174
Eco88I	CYCGRG	1 cut(s)	461
Eco91I	GGTNACC	2 cut(s)	674, 764
EcoICRI	GAGCTC	2 cut(s)	1093, 1605
EcoO109I	RGGNCCY	1 cut(s)	1494
EcoO65I	GGTNACC	2 cut(s)	674, 764
EcoRII	CCWGG	7 cut(s)	299, 312, 451, 507, 848, 954, 1362
EcoT14I	CCWWGG	3 cut(s)	421, 743, 1482
EcoT38I	GRGCYC	3 cut(s)	261, 1095, 1607
EgeI	GGCGCC	2 cut(s)	854, 1211
EheI	GGCGCC	2 cut(s)	854, 1211
ErhI	CCWWGG	3 cut(s)	421, 743, 1482
FaeI	CATG	8 cut(s)	437, 1087, 1108, 1198, 1289, 1426, 1474, 1486
FatI	CATG	8 cut(s)	433, 1083, 1104, 1194, 1285, 1422, 1470, 1482
FauI	CCCGC	4 cut(s)	260, 649, 1164, 1500
FbaI	TGATCA	1 cut(s)	117
FblI	GTMKAC	3 cut(s)	73, 1149, 1293
Fnu4HI	GCNGC	6 cut(s)	81, 184, 538, 584, 950, 1312
FokI	GGATG	2 cut(s)	29, 329
FriOI	GRGCYC	3 cut(s)	261, 1095, 1607
Fsp4HI	GCNGC	6 cut(s)	81, 184, 538, 584, 950, 1312
FspBI	CTAG	4 cut(s)	102, 407, 587, 1317
GlaI	GCGC	5 cut(s)	331, 722, 854, 1211, 1315
GluI	GCNGC	6 cut(s)	81, 184, 538, 584, 950, 1312
GsaI	CCCAGC	1 cut(s)	949
GsuI	CTGGAG	2 cut(s)	666, 938
HaeII	RGCGCY	3 cut(s)	856, 1213, 1317
HapII	CCGG	4 cut(s)	891, 1164, 1369, 1621
HgaI	GACGC	4 cut(s)	561, 601, 618, 926
HhaI	GCGC	5 cut(s)	332, 723, 855, 1212, 1316
Hin1I	GRCGYC	4 cut(s)	553, 853, 1146, 1210
Hin1II	CATG	8 cut(s)	437, 1087, 1108, 1198, 1289, 1426, 1474, 1486
Hin6I	GCGC	5 cut(s)	330, 721, 853, 1210, 1314
HinP1I	GCGC	5 cut(s)	330, 721, 853, 1210, 1314
HinfI	GANTC	6 cut(s)	6, 296, 351, 476, 648, 661
HpaII	CCGG	4 cut(s)	891, 1164, 1369, 1621
HphI	GGTGA	6 cut(s)	78, 346, 587, 635, 643, 1342
Hpy166II	GTNNAC	6 cut(s)	74, 412, 833, 1150, 1294, 1333
Hpy188I	TCNGA	5 cut(s)	291, 348, 481, 490, 608
Hpy188III	TCNNGA	3 cut(s)	461, 1453, 1646
Hpy8I	GTNNAC	6 cut(s)	74, 412, 833, 1150, 1294, 1333
Hpy99I	CGWCG	5 cut(s)	419, 612, 920, 1148, 1523
HpyAV	CCTTC	4 cut(s)	383, 614, 837, 1459
HpyCH4III	ACNGT	6 cut(s)	71, 593, 674, 1068, 1553, 1594
HpyCH4IV	ACGT	5 cut(s)	414, 1000, 1146, 1299, 1521
HpyCH4V	TGCA	2 cut(s)	1051, 1414
HpyF10VI	GCNNNNNNNGC	8 cut(s)	276, 338, 534, 641, 720, 727, 859, 1378
HpyF3I	CTNAG	4 cut(s)	187, 207, 1205, 1220
HpySE526I	ACGT	5 cut(s)	414, 1000, 1146, 1299, 1521
Hsp92I	GRCGYC	4 cut(s)	553, 853, 1146, 1210
Hsp92II	CATG	8 cut(s)	437, 1087, 1108, 1198, 1289, 1426, 1474, 1486
HspAI	GCGC	5 cut(s)	330, 721, 853, 1210, 1314
KasI	GGCGCC	2 cut(s)	852, 1209
KroI	GCCGGC	1 cut(s)	890
KroNI	GCCGGC	1 cut(s)	892
Ksp22I	TGATCA	1 cut(s)	117
Kzo9I	GATC	4 cut(s)	117, 243, 291, 1025
LguI	GCTCTTC	2 cut(s)	1100, 1388
LmnI	GCTCC	6 cut(s)	453, 481, 912, 957, 1090, 1610
Lsp1109I	GCAGC	3 cut(s)	170, 595, 1323
LweI	GCATC	2 cut(s)	1179, 1639
MabI	ACCWGGT	1 cut(s)	1362
MaeI	CTAG	4 cut(s)	102, 407, 587, 1317
MaeII	ACGT	5 cut(s)	414, 1000, 1146, 1299, 1521
MaeIII	GTNAC	5 cut(s)	593, 649, 674, 764, 1100
MalI	GATC	4 cut(s)	119, 245, 293, 1027
MboI	GATC	4 cut(s)	117, 243, 291, 1025
MboII	GAAGA	7 cut(s)	166, 485, 1087, 1120, 1231, 1375, 1608
MflI	RGATCY	1 cut(s)	243
MhlI	GDGCHC	5 cut(s)	261, 450, 1095, 1513, 1607
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	1 cut(s)	749
MluI	ACGCGT	1 cut(s)	610
MluNI	TGGCCA	1 cut(s)	131
Mly113I	GGCGCC	2 cut(s)	853, 1210
MlyI	GAGTC	3 cut(s)	305, 655, 657
MmeI	TCCRAC	2 cut(s)	269, 631
Mox20I	TGGCCA	1 cut(s)	131
MroNI	GCCGGC	1 cut(s)	890
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	1 cut(s)	1654
MslI	CAYNNNNRTG	2 cut(s)	125, 1109
Msp20I	TGGCCA	1 cut(s)	131
MspA1I	CMGCKG	3 cut(s)	235, 644, 949
MspI	CCGG	4 cut(s)	891, 1164, 1369, 1621
MspR9I	CCNGG	8 cut(s)	301, 314, 453, 509, 850, 956, 1364, 1621
MvaI	CCWGG	7 cut(s)	301, 314, 453, 509, 850, 956, 1364
MvnI	CGCG	2 cut(s)	255, 612
MwoI	GCNNNNNNNGC	8 cut(s)	276, 338, 534, 641, 720, 727, 859, 1378
NaeI	GCCGGC	1 cut(s)	892
NarI	GGCGCC	2 cut(s)	853, 1210
NciI	CCSGG	1 cut(s)	1621
NcoI	CCATGG	1 cut(s)	1482
NdeII	GATC	4 cut(s)	117, 243, 291, 1025
NgoMIV	GCCGGC	1 cut(s)	890
NlaIII	CATG	8 cut(s)	437, 1087, 1108, 1198, 1289, 1426, 1474, 1486
NlaIV	GGNNCC	6 cut(s)	605, 854, 953, 1211, 1568, 1625
NmeAIII	GCCGAG	1 cut(s)	1252
NmuCI	GTSAC	3 cut(s)	593, 649, 1100
NspI	RCATGY	1 cut(s)	1198
PaeI	GCATGC	1 cut(s)	1198
PaqCI	CACCTGC	1 cut(s)	662
PciSI	GCTCTTC	2 cut(s)	1100, 1388
PcsI	WCGNNNNNNNCGW	2 cut(s)	1011, 1341
PdiI	GCCGGC	1 cut(s)	892
PfeI	GAWTC	3 cut(s)	6, 351, 476
PflFI	GACNNNGTC	3 cut(s)	1010, 1364, 1523
PkrI	GCNGC	6 cut(s)	82, 185, 539, 585, 951, 1313
PleI	GAGTC	3 cut(s)	304, 655, 656
PluTI	GGCGCC	2 cut(s)	856, 1213
PpsI	GAGTC	3 cut(s)	304, 655, 656
PpuMI	RGGWCCY	1 cut(s)	1494
PshAI	GACNNNNGTC	1 cut(s)	1499
Psp124BI	GAGCTC	2 cut(s)	1095, 1607
Psp5II	RGGWCCY	1 cut(s)	1494
Psp6I	CCWGG	7 cut(s)	299, 312, 451, 507, 848, 954, 1362
PspEI	GGTNACC	2 cut(s)	674, 764
PspFI	CCCAGC	1 cut(s)	945
PspGI	CCWGG	7 cut(s)	299, 312, 451, 507, 848, 954, 1362
PspN4I	GGNNCC	6 cut(s)	605, 854, 953, 1211, 1568, 1625
PspPI	GGNCC	8 cut(s)	505, 604, 846, 1366, 1494, 1525, 1549, 1623
PspPPI	RGGWCCY	1 cut(s)	1494
PsrI	GAACNNNNNNTAC	2 cut(s)	1559, 1591
PsuI	RGATCY	1 cut(s)	243
PsyI	GACNNNGTC	3 cut(s)	1010, 1364, 1523
PvuII	CAGCTG	1 cut(s)	235
RsaI	GTAC	2 cut(s)	1442, 1577
RsaNI	GTAC	2 cut(s)	1441, 1576
RseI	CAYNNNNRTG	2 cut(s)	125, 1109
SacI	GAGCTC	2 cut(s)	1095, 1607
SapI	GCTCTTC	2 cut(s)	1100, 1388
SaqAI	TTAA	1 cut(s)	1654
SatI	GCNGC	6 cut(s)	81, 184, 538, 584, 950, 1312
Sau3AI	GATC	4 cut(s)	117, 243, 291, 1025
Sau96I	GGNCC	8 cut(s)	505, 604, 846, 1366, 1494, 1525, 1549, 1623
SchI	GAGTC	3 cut(s)	305, 655, 657
ScrFI	CCNGG	8 cut(s)	301, 314, 453, 509, 850, 956, 1364, 1621
SduI	GDGCHC	5 cut(s)	261, 450, 1095, 1513, 1607
SexAI	ACCWGGT	1 cut(s)	1362
SfaNI	GCATC	2 cut(s)	1179, 1639
SfcI	CTRYAG	2 cut(s)	1150, 1258
SfiI	GGCCNNNNNGGCC	1 cut(s)	534
SfoI	GGCGCC	2 cut(s)	854, 1211
SinI	GGWCC	7 cut(s)	604, 846, 1366, 1494, 1525, 1549, 1623
SmiMI	CAYNNNNRTG	2 cut(s)	125, 1109
SmlI	CTYRAG	2 cut(s)	1571, 1609
SmoI	CTYRAG	2 cut(s)	1571, 1609
SpeI	ACTAGT	1 cut(s)	406
SphI	GCATGC	1 cut(s)	1198
Sse9I	AATT	1 cut(s)	749
SspDI	GGCGCC	2 cut(s)	852, 1209
SspMI	CTAG	4 cut(s)	102, 407, 587, 1317
SstI	GAGCTC	2 cut(s)	1095, 1607
StyD4I	CCNGG	8 cut(s)	299, 312, 451, 507, 848, 954, 1362, 1619
StyI	CCWWGG	3 cut(s)	421, 743, 1482
TaaI	ACNGT	6 cut(s)	71, 593, 674, 1068, 1553, 1594
TaiI	ACGT	5 cut(s)	417, 1003, 1149, 1302, 1524
TaqI	TCGA	5 cut(s)	294, 897, 930, 1005, 1014
TaqII	GACCGA	1 cut(s)	1472
TasI	AATT	1 cut(s)	749
TatI	WGTACW	2 cut(s)	1440, 1575
TauI	GCSGC	3 cut(s)	83, 540, 952
TfiI	GAWTC	3 cut(s)	6, 351, 476
Tru1I	TTAA	1 cut(s)	1654
Tru9I	TTAA	1 cut(s)	1654
TscAI	CASTG	4 cut(s)	120, 332, 1228, 1274
TseFI	GTSAC	3 cut(s)	593, 649, 1100
TseI	GCWGC	3 cut(s)	183, 583, 1311
Tsp45I	GTSAC	3 cut(s)	593, 649, 1100
TspDTI	ATGAA	6 cut(s)	1086, 1121, 1127, 1302, 1375, 1490
TspGWI	ACGGA	2 cut(s)	1446, 1489
TspRI	CASTG	4 cut(s)	120, 332, 1228, 1274
Tth111I	GACNNNGTC	3 cut(s)	1010, 1364, 1523
VpaK11BI	GGWCC	7 cut(s)	604, 846, 1366, 1494, 1525, 1549, 1623
XapI	RAATTY	1 cut(s)	749
XceI	RCATGY	1 cut(s)	1198
XmiI	GTMKAC	3 cut(s)	73, 1149, 1293
XspI	CTAG	4 cut(s)	102, 407, 587, 1317
ZraI	GACGTC	1 cut(s)	1147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.