Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Forward (+)

53889604 .. 53892182

Gene Structure 2579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG309900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1710 bp

ATGGCTAAGCCTATAGCTCTCACCTTTTCTCTCTGCTTGCTTGTCCTCTTCCACAGCTGCTTAGCAGCTCGCCAGCAATCTCAGTCGAGCCAGCAGAATGAGTGCCAACTAGATCAGCTCCAAGCCCGCGAACCTGATAACCGCATTGAGACTGAAGCGGGTAGGATTGAGTCCTGGGACTACAACCAGGACGACTTCCAGTGTGCTGGTGTTGCCGTTCAACGAATTACCATTGAAAGAAATGGCCTTCACTTACCTTCTTACACCCACGCTCCACAACTCACTTATGTCGTCCAAGGCAATGGTTTTCTATCAACTGTTTTCCCTGGCTGTCCTGAAACTTTCGAAGAATCTGAGCAATCTGATGAAGAACAACAAGGCCAGCAAGGGCGCCGTGGACGGCAAGGTCGTGGACAGCAAGAGCAGCAAGAACAAGAAGAGTATGAGCAACAACAACAACAACAACAACAAGGCCGTGGACAACAAGGTCGACAAGGCCGTGGACAGCAAGGTCGTCGTAGACAACAAGGGCAGCAAGGCCAACAGGGACAAGAGAGCTTCGAACAGCTAGACAGACACCAGAAGGTTCGACGAATCAGAGAAGGTGATGTGATTGCTATTCCTGCTGGAGTCACTTACTGGTCCTACAACGACGGTGACCAACCTCTTGTTGCTGTCAATCTTCTTGATATCAGCAACCAACAAAACCAGCTTGACCGTAACCCCAGGAGATTCTATCTTGCTGGTAACCCACAAGATGAGTTTAACCAACAAGGGCAAAGCCAGAGTCGACGGGGCCAGCAAGGACGTGGACAACAAGGGCAAGGCCAAAGTCAATGGGACCGGGACCAGCAACAGCAACAGCATGGTGGAAGGAGCAGGCACCAGCAACAACAACAAGGAAACAACAACAACAACATCTTCGCCGGCTTCAACACACAGCTTCTCGCTGACGCTCTGAACATCGACCAACAGACTGCCCAGCAGCTTCAGGGACAAAACGACAACAGACCCCAAATTGTGAGAGTTAGAGGACGTCTTGATTTCATCGAACCACCACGATCACAACAGGAGGAAAGACAACAACAGGGAATACAGAGACAACAGGGACAACAAGGACAGAATGGTTTTGAGGAGACATTCTGTAACTTCAGGATCAGAGAGAATATTGGCAGGCCTTCACGCGCCGACGTCTTCAGTCCCCAAGCTGGTCGCATCAGCACCCTCAACAGCTTTAAGTTGCCTATTCTCAGGTACCTTGACCTCAGCGCTGAGAGAGGCTTCTTCTACAATAATGCTATCTACAGTCCTCACTGGAACTTGAACGCTCATGAAGTCTACTACGTCATTAGAGGTAGTGCTAGGGTTCAGGTTGTGAATGACAATGGCCAGGCCATCTTGGACAATGAGGTCCGCCAGGGACAGCTCTTCATAGTGCCACAGAACCATGCAGTGTTGCAGAAGGCTGGCAACAATGGATACGAGTACATTGCTTTCAAGACCCAAGACAATGCTAAGATTAACACTCTTGCCGGCCGGACCTCAGTCTTGCGGGCACTCCCCGACGTGGTCCTCGCTAACGCATACCAGATTGATCGACAACAGGCAAGGACTCTCAAGTACAACAGGCAGGAGACTGTTGCCTTGAGCTCATCAAGGTCTTCTCGATCCCAGAGGAACTGGTGGGATATTGCTGAAATGTTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

569

Amino Acids

65.24

Weight (kDa)

7.67

Isoelectric Point (pI)

67.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	41 - 251	5.1e-25	Cupin
Cupin_1	PF00190	389 - 536	6.5e-40	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	4 cut(s)	405, 486, 510, 1409
AatII	GACGTC	2 cut(s)	1039, 1194
Acc65I	GGTACC	1 cut(s)	1254
AccB1I	GGYRCC	3 cut(s)	390, 882, 1254
AccI	GTMKAC	4 cut(s)	490, 520, 790, 1338
AccII	CGCG	2 cut(s)	129, 1185
AciI	CCGC	5 cut(s)	127, 142, 158, 1414, 1552
AclWI	GGATC	2 cut(s)	1163, 1662
AcoI	YGGCCR	2 cut(s)	1387, 1534
AcuI	CTGAAG	4 cut(s)	174, 974, 1135, 1180
AcyI	GRCGYC	3 cut(s)	391, 1036, 1191
AfaI	GTAC	3 cut(s)	1256, 1487, 1622
AfeI	AGCGCT	1 cut(s)	1270
AfiI	CCNNNNNNNGG	2 cut(s)	1208, 1567
AgsI	TTSAA	5 cut(s)	221, 236, 934, 1324, 1498
AjiI	CACGTC	2 cut(s)	809, 1567
AjnI	CCWGG	6 cut(s)	173, 186, 325, 725, 1389, 1416
Alw21I	GWGCWC	1 cut(s)	1652
Alw26I	GTCTC	4 cut(s)	143, 1093, 1130, 1628
AlwI	GGATC	2 cut(s)	1163, 1662
Aor51HI	AGCGCT	1 cut(s)	1270
ApeKI	GCWGC	5 cut(s)	57, 65, 424, 532, 985
ArsI	GACNNNNNNTTYG	2 cut(s)	772, 804
Asp718I	GGTACC	1 cut(s)	1254
AspLEI	GCGC	3 cut(s)	393, 1187, 1271
AspS9I	GGNCC	7 cut(s)	642, 796, 841, 847, 1411, 1539, 1570
AsuC2I	CCSGG	1 cut(s)	845
AsuHPI	GGTGA	3 cut(s)	13, 617, 668
AsuII	TTCGAA	2 cut(s)	345, 561
AvaII	GGWCC	6 cut(s)	642, 841, 847, 1411, 1539, 1570
BaeGI	GKGCMC	1 cut(s)	1558
BalI	TGGCCA	1 cut(s)	1389
BanI	GGYRCC	3 cut(s)	390, 882, 1254
BanII	GRGCYC	1 cut(s)	1652
BbsI	GAAGAC	2 cut(s)	1186, 1653
Bbv12I	GWGCWC	1 cut(s)	1652
BbvCI	CCTCAGC	1 cut(s)	1265
BbvI	GCAGC	5 cut(s)	44, 77, 436, 544, 997
BccI	CCATC	1 cut(s)	1403
BceAI	ACGGC	5 cut(s)	200, 378, 416, 459, 483
BcgI	CGANNNNNNTGC	4 cut(s)	497, 531, 1472, 1506
BciT130I	CCWGG	6 cut(s)	175, 188, 327, 727, 1391, 1418
BciVI	GTATCC	1 cut(s)	1472
BcnI	CCSGG	1 cut(s)	845
BcoDI	GTCTC	4 cut(s)	143, 1093, 1130, 1628
BfaI	CTAG	3 cut(s)	110, 569, 1362
BfmI	CTRYAG	2 cut(s)	12, 1303
BfoI	RGCGCY	2 cut(s)	394, 1272
BfuI	GTATCC	1 cut(s)	1472
BisI	GCNGC	5 cut(s)	58, 66, 425, 533, 986
BlpI	GCTNAGC	2 cut(s)	6, 61
BlsI	GCNGC	5 cut(s)	59, 67, 426, 534, 987
Bme1390I	CCNGG	7 cut(s)	175, 188, 327, 727, 845, 1391, 1418
Bme18I	GGWCC	6 cut(s)	642, 841, 847, 1411, 1539, 1570
BmgBI	CACGTC	2 cut(s)	809, 1567
BmgT120I	GGNCC	7 cut(s)	642, 796, 841, 847, 1411, 1539, 1570
BmiI	GGNNCC	6 cut(s)	392, 797, 842, 848, 884, 1256
BmrFI	CCNGG	7 cut(s)	175, 188, 327, 727, 845, 1391, 1418
BmsI	GCATC	1 cut(s)	1224
BoxI	GACNNNNGTC	1 cut(s)	1544
BpiI	GAAGAC	2 cut(s)	1186, 1653
BpmI	CTGGAG	1 cut(s)	648
Bpu10I	CCTNAGC	1 cut(s)	1265
Bpu1102I	GCTNAGC	2 cut(s)	6, 61
Bpu14I	TTCGAA	2 cut(s)	345, 561
BpuEI	CTTGAG	2 cut(s)	1601, 1666
BpuMI	CCSGG	1 cut(s)	845
BsaHI	GRCGYC	3 cut(s)	391, 1036, 1191
BsaJI	CCNNGG	8 cut(s)	174, 295, 325, 394, 475, 499, 725, 1417
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bsc4I	CCNNNNNNNGG	2 cut(s)	1208, 1567
Bse118I	RCCGGY	2 cut(s)	926, 1532
Bse1I	ACTGG	4 cut(s)	199, 644, 1319, 1685
Bse3DI	GCAATG	2 cut(s)	307, 1488
BseBI	CCWGG	6 cut(s)	175, 188, 327, 727, 1391, 1418
BseDI	CCNNGG	8 cut(s)	174, 295, 325, 394, 475, 499, 725, 1417
BseLI	CCNNNNNNNGG	2 cut(s)	1208, 1567
BseMI	GCAATG	2 cut(s)	307, 1488
BseMII	CTCAG	6 cut(s)	95, 345, 1263, 1264, 1279, 1557
BseNI	ACTGG	4 cut(s)	199, 644, 1319, 1685
BseRI	GAGGAG	1 cut(s)	1148
BseSI	GKGCMC	1 cut(s)	1558
BseX3I	CGGCCG	1 cut(s)	1534
BseXI	GCAGC	5 cut(s)	44, 77, 436, 544, 997
BseYI	CCCAGC	1 cut(s)	981
Bsh1236I	CGCG	2 cut(s)	129, 1185
Bsh1285I	CGRYCG	1 cut(s)	1537
BshNI	GGYRCC	3 cut(s)	390, 882, 1254
BsiEI	CGRYCG	1 cut(s)	1537
BsiHKAI	GWGCWC	1 cut(s)	1652
BsiSI	CCGG	4 cut(s)	844, 927, 1533, 1537
BslFI	GGGAC	8 cut(s)	191, 561, 854, 860, 1008, 1122, 1185, 1434
BslI	CCNNNNNNNGG	2 cut(s)	1208, 1567
BsmAI	GTCTC	4 cut(s)	143, 1093, 1130, 1628
BsmFI	GGGAC	8 cut(s)	191, 561, 854, 860, 1008, 1122, 1185, 1434
Bsp119I	TTCGAA	2 cut(s)	345, 561
Bsp1286I	GDGCHC	2 cut(s)	1558, 1652
Bsp143I	GATC	5 cut(s)	112, 1061, 1155, 1594, 1667
Bsp1720I	GCTNAGC	2 cut(s)	6, 61
BspACI	CCGC	5 cut(s)	127, 142, 158, 1414, 1552
BspCNI	CTCAG	6 cut(s)	94, 346, 1263, 1264, 1278, 1556
BspFNI	CGCG	2 cut(s)	129, 1185
BspHI	TCATGA	1 cut(s)	1330
BspLI	GGNNCC	6 cut(s)	392, 797, 842, 848, 884, 1256
BspPI	GGATC	2 cut(s)	1163, 1662
BspQI	GCTCTTC	1 cut(s)	1433
BspT104I	TTCGAA	2 cut(s)	345, 561
BspT107I	GGYRCC	3 cut(s)	390, 882, 1254
BsrDI	GCAATG	2 cut(s)	307, 1488
BsrFI	RCCGGY	2 cut(s)	926, 1532
BsrI	ACTGG	4 cut(s)	199, 644, 1319, 1685
BssAI	RCCGGY	2 cut(s)	926, 1532
BssECI	CCNNGG	8 cut(s)	174, 295, 325, 394, 475, 499, 725, 1417
BssMI	GATC	5 cut(s)	112, 1061, 1155, 1594, 1667
BssNI	GRCGYC	3 cut(s)	391, 1036, 1191
BssT1I	CCWWGG	1 cut(s)	295
Bst2UI	CCWGG	6 cut(s)	175, 188, 327, 727, 1391, 1418
Bst4CI	ACNGT	5 cut(s)	319, 656, 719, 1307, 1639
Bst6I	CTCTTC	3 cut(s)	53, 432, 1433
BstACI	GRCGYC	3 cut(s)	391, 1036, 1191
BstBI	TTCGAA	2 cut(s)	345, 561
BstDEI	CTNAG	9 cut(s)	6, 61, 81, 354, 1250, 1265, 1272, 1515, 1543
BstDSI	CCRYGG	3 cut(s)	394, 475, 499
BstEII	GGTNACC	2 cut(s)	656, 746
BstFNI	CGCG	2 cut(s)	129, 1185
BstH2I	RGCGCY	2 cut(s)	394, 1272
BstHHI	GCGC	3 cut(s)	393, 1187, 1271
BstKTI	GATC	5 cut(s)	115, 1064, 1158, 1597, 1670
BstMAI	GTCTC	4 cut(s)	143, 1093, 1130, 1628
BstMBI	GATC	5 cut(s)	112, 1061, 1155, 1594, 1667
BstMCI	CGRYCG	1 cut(s)	1537
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 424, 623
BstNI	CCWGG	6 cut(s)	175, 188, 327, 727, 1391, 1418
BstPAI	GACNNNNGTC	1 cut(s)	1544
BstPI	GGTNACC	2 cut(s)	656, 746
BstSCI	CCNGG	7 cut(s)	173, 186, 325, 725, 843, 1389, 1416
BstSFI	CTRYAG	2 cut(s)	12, 1303
BstSLI	GKGCMC	1 cut(s)	1558
BstUI	CGCG	2 cut(s)	129, 1185
BstV1I	GCAGC	5 cut(s)	44, 77, 436, 544, 997
BstV2I	GAAGAC	2 cut(s)	1186, 1653
BstXI	CCANNNNNNTGG	2 cut(s)	206, 302
BstZI	CGGCCG	1 cut(s)	1534
BsuI	GTATCC	1 cut(s)	1472
BtgI	CCRYGG	3 cut(s)	394, 475, 499
BtrI	CACGTC	2 cut(s)	809, 1567
BtsI	GCAGTG	1 cut(s)	1458
BtsIMutI	CAGTG	3 cut(s)	206, 1312, 1458
CciI	TCATGA	1 cut(s)	1330
CfoI	GCGC	3 cut(s)	393, 1187, 1271
Cfr10I	RCCGGY	2 cut(s)	926, 1532
Cfr13I	GGNCC	7 cut(s)	642, 796, 841, 847, 1411, 1539, 1570
CseI	GACGC	1 cut(s)	962
Csp6I	GTAC	3 cut(s)	1255, 1486, 1621
CviAII	CATG	3 cut(s)	866, 1331, 1448
CviQI	GTAC	3 cut(s)	1255, 1486, 1621
DdeI	CTNAG	9 cut(s)	6, 61, 81, 354, 1250, 1265, 1272, 1515, 1543
DinI	GGCGCC	1 cut(s)	392
DpnI	GATC	5 cut(s)	114, 1063, 1157, 1596, 1669
DpnII	GATC	5 cut(s)	112, 1061, 1155, 1594, 1667
DrdI	GACNNNNNNGTC	4 cut(s)	405, 486, 510, 1409
DseDI	GACNNNNNNGTC	4 cut(s)	405, 486, 510, 1409
EaeI	YGGCCR	2 cut(s)	1387, 1534
EagI	CGGCCG	1 cut(s)	1534
Eam1104I	CTCTTC	3 cut(s)	53, 432, 1433
EarI	CTCTTC	3 cut(s)	53, 432, 1433
EciI	GGCGGA	1 cut(s)	1403
Ecl136II	GAGCTC	1 cut(s)	1650
EclXI	CGGCCG	1 cut(s)	1534
Eco130I	CCWWGG	1 cut(s)	295
Eco147I	AGGCCT	1 cut(s)	1177
Eco24I	GRGCYC	1 cut(s)	1652
Eco32I	GATATC	1 cut(s)	691
Eco47I	GGWCC	6 cut(s)	642, 841, 847, 1411, 1539, 1570
Eco47III	AGCGCT	1 cut(s)	1270
Eco52I	CGGCCG	1 cut(s)	1534
Eco53kI	GAGCTC	1 cut(s)	1650
Eco57I	CTGAAG	4 cut(s)	174, 974, 1135, 1180
Eco91I	GGTNACC	2 cut(s)	656, 746
EcoICRI	GAGCTC	1 cut(s)	1650
EcoO65I	GGTNACC	2 cut(s)	656, 746
EcoRII	CCWGG	6 cut(s)	173, 186, 325, 725, 1389, 1416
EcoRV	GATATC	1 cut(s)	691
EcoT14I	CCWWGG	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	1652
EgeI	GGCGCC	1 cut(s)	392
EheI	GGCGCC	1 cut(s)	392
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	3 cut(s)	869, 1334, 1451
FaiI	YATR	9 cut(s)	14, 288, 444, 867, 1332, 1433, 1449, 1585, 1708
FaqI	GGGAC	8 cut(s)	191, 561, 854, 860, 1008, 1122, 1185, 1434
FatI	CATG	3 cut(s)	865, 1330, 1447
FauI	CCCGC	3 cut(s)	134, 151, 1545
FblI	GTMKAC	4 cut(s)	490, 520, 790, 1338
Fnu4HI	GCNGC	5 cut(s)	58, 66, 425, 533, 986
FriOI	GRGCYC	1 cut(s)	1652
Fsp4HI	GCNGC	5 cut(s)	58, 66, 425, 533, 986
FspBI	CTAG	3 cut(s)	110, 569, 1362
GlaI	GCGC	3 cut(s)	392, 1186, 1270
GluI	GCNGC	5 cut(s)	58, 66, 425, 533, 986
GsaI	CCCAGC	1 cut(s)	985
GsuI	CTGGAG	1 cut(s)	648
HaeII	RGCGCY	2 cut(s)	394, 1272
HapII	CCGG	4 cut(s)	844, 927, 1533, 1537
HgaI	GACGC	1 cut(s)	962
HhaI	GCGC	3 cut(s)	393, 1187, 1271
Hin1I	GRCGYC	3 cut(s)	391, 1036, 1191
Hin1II	CATG	3 cut(s)	869, 1334, 1451
Hin6I	GCGC	3 cut(s)	391, 1185, 1269
HinP1I	GCGC	3 cut(s)	391, 1185, 1269
HincII	GTYRAC	2 cut(s)	491, 791
HindII	GTYRAC	2 cut(s)	491, 791
HinfI	GANTC	7 cut(s)	170, 350, 594, 630, 732, 787, 1612
HpaII	CCGG	4 cut(s)	844, 927, 1533, 1537
HphI	GGTGA	3 cut(s)	13, 617, 668
Hpy166II	GTNNAC	9 cut(s)	398, 413, 479, 491, 503, 521, 791, 812, 1339
Hpy188I	TCNGA	5 cut(s)	355, 364, 599, 960, 1160
Hpy188III	TCNNGA	7 cut(s)	335, 686, 1040, 1153, 1331, 1498, 1665
Hpy8I	GTNNAC	9 cut(s)	398, 413, 479, 491, 503, 521, 791, 812, 1339
Hpy99I	CGWCG	6 cut(s)	519, 594, 656, 795, 1193, 1568
HpyAV	CCTTC	7 cut(s)	257, 267, 577, 596, 867, 1188, 1456
HpyCH4III	ACNGT	5 cut(s)	319, 656, 719, 1307, 1639
HpyCH4IV	ACGT	5 cut(s)	808, 1036, 1191, 1344, 1566
HpyCH4V	TGCA	2 cut(s)	1451, 1459
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 424, 623
HpyF3I	CTNAG	9 cut(s)	6, 61, 81, 354, 1250, 1265, 1272, 1515, 1543
HpySE526I	ACGT	5 cut(s)	808, 1036, 1191, 1344, 1566
Hsp92I	GRCGYC	3 cut(s)	391, 1036, 1191
Hsp92II	CATG	3 cut(s)	869, 1334, 1451
HspAI	GCGC	3 cut(s)	391, 1185, 1269
KasI	GGCGCC	1 cut(s)	390
KpnI	GGTACC	1 cut(s)	1258
KroI	GCCGGC	2 cut(s)	926, 1532
KroNI	GCCGGC	2 cut(s)	928, 1534
Kzo9I	GATC	5 cut(s)	112, 1061, 1155, 1594, 1667
LguI	GCTCTTC	1 cut(s)	1433
LmnI	GCTCC	3 cut(s)	123, 277, 876
Lsp1109I	GCAGC	5 cut(s)	44, 77, 436, 544, 997
LweI	GCATC	1 cut(s)	1224
MaeI	CTAG	3 cut(s)	110, 569, 1362
MaeII	ACGT	5 cut(s)	808, 1036, 1191, 1344, 1566
MaeIII	GTNAC	5 cut(s)	631, 656, 719, 746, 1145
MalI	GATC	5 cut(s)	114, 1063, 1157, 1596, 1669
MboI	GATC	5 cut(s)	112, 1061, 1155, 1594, 1667
MhlI	GDGCHC	2 cut(s)	1558, 1652
MlsI	TGGCCA	1 cut(s)	1389
MluCI	AATT	2 cut(s)	225, 1017
MluNI	TGGCCA	1 cut(s)	1389
Mly113I	GGCGCC	1 cut(s)	391
MlyI	GAGTC	4 cut(s)	179, 639, 796, 1606
Mox20I	TGGCCA	1 cut(s)	1389
MroNI	GCCGGC	2 cut(s)	926, 1532
MscI	TGGCCA	1 cut(s)	1389
MseI	TTAA	3 cut(s)	765, 1236, 1521
Msp20I	TGGCCA	1 cut(s)	1389
MspA1I	CMGCKG	1 cut(s)	57
MspI	CCGG	4 cut(s)	844, 927, 1533, 1537
MspR9I	CCNGG	7 cut(s)	175, 188, 327, 727, 845, 1391, 1418
MvaI	CCWGG	6 cut(s)	175, 188, 327, 727, 1391, 1418
MvnI	CGCG	2 cut(s)	129, 1185
MwoI	GCNNNNNNNGC	3 cut(s)	212, 424, 623
NaeI	GCCGGC	2 cut(s)	928, 1534
NarI	GGCGCC	1 cut(s)	391
NciI	CCSGG	1 cut(s)	845
NdeII	GATC	5 cut(s)	112, 1061, 1155, 1594, 1667
NgoMIV	GCCGGC	2 cut(s)	926, 1532
NlaIII	CATG	3 cut(s)	869, 1334, 1451
NlaIV	GGNNCC	6 cut(s)	392, 797, 842, 848, 884, 1256
NmuCI	GTSAC	2 cut(s)	631, 656
NspV	TTCGAA	2 cut(s)	345, 561
PagI	TCATGA	1 cut(s)	1330
PceI	AGGCCT	1 cut(s)	1177
PciSI	GCTCTTC	1 cut(s)	1433
PcsI	WCGNNNNNNNCGW	2 cut(s)	406, 496
PdiI	GCCGGC	2 cut(s)	928, 1534
PfeI	GAWTC	3 cut(s)	350, 594, 732
PflFI	GACNNNGTC	1 cut(s)	1568
PkrI	GCNGC	5 cut(s)	59, 67, 426, 534, 987
PleI	GAGTC	4 cut(s)	178, 638, 795, 1606
PluTI	GGCGCC	1 cut(s)	394
PpsI	GAGTC	4 cut(s)	178, 638, 795, 1606
PshAI	GACNNNNGTC	1 cut(s)	1544
Psp124BI	GAGCTC	1 cut(s)	1652
Psp6I	CCWGG	6 cut(s)	173, 186, 325, 725, 1389, 1416
PspEI	GGTNACC	2 cut(s)	656, 746
PspFI	CCCAGC	1 cut(s)	981
PspGI	CCWGG	6 cut(s)	173, 186, 325, 725, 1389, 1416
PspN4I	GGNNCC	6 cut(s)	392, 797, 842, 848, 884, 1256
PspPI	GGNCC	7 cut(s)	642, 796, 841, 847, 1411, 1539, 1570
PsyI	GACNNNGTC	1 cut(s)	1568
PvuII	CAGCTG	1 cut(s)	57
RsaI	GTAC	3 cut(s)	1256, 1487, 1622
RsaNI	GTAC	3 cut(s)	1255, 1486, 1621
SacI	GAGCTC	1 cut(s)	1652
SalI	GTCGAC	2 cut(s)	489, 789
SapI	GCTCTTC	1 cut(s)	1433
SaqAI	TTAA	3 cut(s)	765, 1236, 1521
SatI	GCNGC	5 cut(s)	58, 66, 425, 533, 986
Sau3AI	GATC	5 cut(s)	112, 1061, 1155, 1594, 1667
Sau96I	GGNCC	7 cut(s)	642, 796, 841, 847, 1411, 1539, 1570
SchI	GAGTC	4 cut(s)	179, 639, 796, 1606
ScrFI	CCNGG	7 cut(s)	175, 188, 327, 727, 845, 1391, 1418
SduI	GDGCHC	2 cut(s)	1558, 1652
SfaNI	GCATC	1 cut(s)	1224
SfcI	CTRYAG	2 cut(s)	12, 1303
SfoI	GGCGCC	1 cut(s)	392
SfuI	TTCGAA	2 cut(s)	345, 561
SinI	GGWCC	6 cut(s)	642, 841, 847, 1411, 1539, 1570
SmlI	CTYRAG	2 cut(s)	1616, 1645
SmoI	CTYRAG	2 cut(s)	1616, 1645
Sse9I	AATT	2 cut(s)	225, 1017
SseBI	AGGCCT	1 cut(s)	1177
SsiI	CCGC	5 cut(s)	127, 142, 158, 1414, 1552
SspDI	GGCGCC	1 cut(s)	390
SspI	AATATT	1 cut(s)	1168
SspMI	CTAG	3 cut(s)	110, 569, 1362
SstI	GAGCTC	1 cut(s)	1652
StuI	AGGCCT	1 cut(s)	1177
StyD4I	CCNGG	7 cut(s)	173, 186, 325, 725, 843, 1389, 1416
StyI	CCWWGG	1 cut(s)	295
TaaI	ACNGT	5 cut(s)	319, 656, 719, 1307, 1639
TaiI	ACGT	5 cut(s)	811, 1039, 1194, 1347, 1569
TasI	AATT	2 cut(s)	225, 1017
TatI	WGTACW	2 cut(s)	1485, 1620
TfiI	GAWTC	3 cut(s)	350, 594, 732
Tru1I	TTAA	3 cut(s)	765, 1236, 1521
Tru9I	TTAA	3 cut(s)	765, 1236, 1521
TscAI	CASTG	3 cut(s)	206, 1319, 1458
TseFI	GTSAC	2 cut(s)	631, 656
TseI	GCWGC	5 cut(s)	57, 65, 424, 532, 985
Tsp45I	GTSAC	2 cut(s)	631, 656
TspDTI	ATGAA	4 cut(s)	381, 1036, 1347, 1420
TspRI	CASTG	3 cut(s)	206, 1319, 1458
Tth111I	GACNNNGTC	1 cut(s)	1568
VpaK11BI	GGWCC	6 cut(s)	642, 841, 847, 1411, 1539, 1570
XcmI	CCANNNNNNNNNTGG	1 cut(s)	806
XmiI	GTMKAC	4 cut(s)	490, 520, 790, 1338
XspI	CTAG	3 cut(s)	110, 569, 1362
ZraI	GACGTC	2 cut(s)	1037, 1192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.