Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Forward (+)

5303753 .. 5305729

Gene Structure 1977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0041200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGAGGCCTTCAAAAGATACTGAAATGCAGAAACAGATTGACAAGAAACTTGGCTACATGCATAGTAGATCTCTTGATGAAACATATGGCACTGAGCTGCATAGTCTCCCTAACCAGTTGCAGACAGCAGGTAGCCTACCTGGGAGCTTTAATTATATGGTGGAGGAATGTTTAGATGTGGATTTTAATCCAGATTGGTGGTGGCAAAATTACTTGGGCAAAATTTACCTTTTCCTTTATATGAGAGCTAAGTACCTTTATGACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

89

Amino Acids

10.64

Weight (kDa)

5.18

Isoelectric Point (pI)

57.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	119
AcsI	RAATTY	1 cut(s)	222
AfaI	GTAC	1 cut(s)	254
AgsI	TTSAA	1 cut(s)	12
AjnI	CCWGG	1 cut(s)	139
AluBI	AGCT	4 cut(s)	97, 147, 248, 267
AluI	AGCT	4 cut(s)	97, 147, 248, 267
Alw26I	GTCTC	1 cut(s)	110
AoxI	GGCC	1 cut(s)	5
ApeKI	GCWGC	1 cut(s)	97
ApoI	RAATTY	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	84
BciT130I	CCWGG	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	1 cut(s)	268
BfuAI	ACCTGC	1 cut(s)	119
BglII	AGATCT	1 cut(s)	68
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
Bme1390I	CCNGG	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	141
BsaBI	GATNNNNATC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	115
Bse8I	GATNNNNATC	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	140
BseJI	GATNNNNATC	1 cut(s)	186
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	84
BshFI	GGCC	1 cut(s)	7
BsmAI	GTCTC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	7
Bsp143I	GATC	1 cut(s)	68
BspANI	GGCC	1 cut(s)	7
BspCNI	CTCAG	1 cut(s)	85
BspMI	ACCTGC	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	140
BssMI	GATC	1 cut(s)	68
Bst2UI	CCWGG	1 cut(s)	141
BstDEI	CTNAG	2 cut(s)	93, 249
BstKTI	GATC	1 cut(s)	71
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	1 cut(s)	68
BstNI	CCWGG	1 cut(s)	141
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	1 cut(s)	139
BstV1I	GCAGC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	68
BstXI	CCANNNNNNTGG	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	7
BtsIMutI	CAGTG	1 cut(s)	90
BveI	ACCTGC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	7 cut(s)	7, 54, 97, 135, 147, 248, 267
CviKI_1	RGCY	7 cut(s)	7, 54, 97, 135, 147, 248, 267
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	2 cut(s)	93, 249
DpnI	GATC	1 cut(s)	70
DpnII	GATC	1 cut(s)	68
Eco147I	AGGCCT	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	139
EcoT22I	ATGCAT	1 cut(s)	63
FaeI	CATG	1 cut(s)	61
FatI	CATG	1 cut(s)	57
FauNDI	CATATG	1 cut(s)	85
Fnu4HI	GCNGC	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	98
FspBI	CTAG	1 cut(s)	268
GluI	GCNGC	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	7
Hin1II	CATG	1 cut(s)	61
Hpy188III	TCNNGA	2 cut(s)	74, 191
HpyAV	CCTTC	1 cut(s)	18
HpyCH4V	TGCA	4 cut(s)	28, 61, 100, 121
HpyF3I	CTNAG	2 cut(s)	93, 249
Hsp92II	CATG	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	68
LmnI	GCTCC	1 cut(s)	144
LpnPI	CCDG	5 cut(s)	114, 126, 128, 153, 204
Lsp1109I	GCAGC	1 cut(s)	84
MaeI	CTAG	1 cut(s)	268
MalI	GATC	1 cut(s)	70
MboI	GATC	1 cut(s)	68
MflI	RGATCY	1 cut(s)	68
MluCI	AATT	3 cut(s)	151, 208, 222
MnlI	CCTC	1 cut(s)	157
Mph1103I	ATGCAT	1 cut(s)	63
MseI	TTAA	2 cut(s)	150, 186
MspR9I	CCNGG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	141
NdeI	CATATG	1 cut(s)	85
NdeII	GATC	1 cut(s)	68
NlaIII	CATG	1 cut(s)	61
NsiI	ATGCAT	1 cut(s)	63
NspI	RCATGY	1 cut(s)	61
PceI	AGGCCT	1 cut(s)	7
PkrI	GCNGC	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	68
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SaqAI	TTAA	2 cut(s)	150, 186
SatI	GCNGC	1 cut(s)	98
Sau3AI	GATC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	141
SetI	ASST	8 cut(s)	99, 133, 142, 149, 231, 250, 258, 269
Sse9I	AATT	3 cut(s)	151, 208, 222
SseBI	AGGCCT	1 cut(s)	7
SspMI	CTAG	1 cut(s)	268
StuI	AGGCCT	1 cut(s)	7
StyD4I	CCNGG	1 cut(s)	139
TasI	AATT	3 cut(s)	151, 208, 222
Tru1I	TTAA	2 cut(s)	150, 186
Tru9I	TTAA	2 cut(s)	150, 186
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	1 cut(s)	97
TspDTI	ATGAA	1 cut(s)	93
TspRI	CASTG	1 cut(s)	97
XapI	RAATTY	1 cut(s)	222
XceI	RCATGY	1 cut(s)	61
XcmI	CCANNNNNNNNNTGG	1 cut(s)	198
XspI	CTAG	1 cut(s)	268
Zsp2I	ATGCAT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.