Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Reverse (-)

48045540 .. 48047688

Gene Structure 2149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG300200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGGCCAAGCATTTAGCTCTCGTTTTCTCTCTCTGCTTTATTGTTCTCTTCCACGGCTGCTTAGCCAGTCGCCAACAATCTCAGTTCAGCCAGCAAAATGAGTGCCAGCTGAACCAGATCCAAGCCCGCGAGCCCGACAACCGCATTGAGTGCGAAGCAGGTCGGATCGAGTCCTGGGACTACAACCAGGATGACTTCCAGTGCGCTGGTGTCGCCGTTCAGAGAATCACCATTGAGAGCAACGGCCTTCACTTGCCATCTTACACTAACACCCCACGACTAGTTTACGTCGTCCAAGGTTGGGGTCATGTAGGAATGGTGCTCCCTGGCTGTCCCGAGACTTTTGAAGAATCGGAGCAATCTGATGAGGAACAACAGGGCCAGGAACAACAAGGGCAAGGCCAACGAGGCCGCCAGCAACAGGGACGCCGACAGGGACAACAAGAGAGCTTTGAGCAGCTAGACCGTCACCAGAGGGTCCGACGCGTCAAGGAAGGTGATGTCATTGCCGTCCCCGCTGGAGTCACCTGCTGGACTCACAACCACGGTAACCAACCTCTTGTTTTTGTCAGTCTTTTTGATATGAGCAACAAGCGCAACCAGCTTGACCAAAACCCAAGGAAATTCTATCTTGCTGGTAACCCACAAGATGAGTTCAACCAACAAGGCCAAAGCCAATGGGGACAACAAGGACAACAAGGCCGTGGACAACAAGGAAGGACCAGGCGCCAACAGCAGGGAAACAACAACAACAACATCTTTGCCGGCTTCGACACACAGCTCCTCGCCGACGCTCTCAACATCGACCAACAGACCGCCCAGCGGCTCCAGGGACAGAACGACAACAGGCCACAGATTGTTAGGGTTCAGGGACGTTTCGACTTTGTCGAGCCACCACGATCACAGAGGGAGGAAAGACAAATGCAGGGACAAAAAGGACAGTATGAACAGAATGGCATGGAGGAGCTCTTCTGTCACATGAAGATGAAACAGAACATTGGCAAACCTAAAATGGCCGACGTCTACAGCCCGCAAGCCGGTCGCATCAGCACCCTCAACAGCTTCAGCATGCCTATTCTCAGGCGCCTCCGCCTCAGTGCCGAGAGAGGCTTCTTCTACAACAACGCTATCTACAGCCCACACTGGAACTTGAACGCCCATGAAGTCTACTACGTCATCAGGGGCAGCGCTAGGGTTCAGGTGGTGAACGACAATGGCGAGACCATCTTGGACGACCAGGTCCGGCAGGGACAGCTCTTCATCGTGCCACAGAACCACGCCGTGTTGCAAAAGGCCATGAGCAACGGATACGAGTACATTGCCTTCAAGACCGATGACAATGCCATGATGAACACCATGGCTGGCAGGACCTCCGTCCTGCGGGCACTCCCCGACGTGGTCCTCGCCAACGCCTACCAGATGGACCGTGAGCAGGCAAGGAACCTCAAGTACAACAGGCAGGAGACCGTTGCTTTGAGCTCCTCAAGGTCTTCCCGGTCCCAGAGGAACTGGTGGCCTCTTGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

509

Amino Acids

58.43

Weight (kDa)

8.08

Isoelectric Point (pI)

59.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	41 - 215	9.3e-27	Cupin
Cupin_1	PF00190	332 - 479	1.8e-38	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	536
AasI	GACNNNNNNGTC	1 cut(s)	1238
AatII	GACGTC	1 cut(s)	1023
Acc36I	ACCTGC	2 cut(s)	149, 536
AccB1I	GGYRCC	2 cut(s)	726, 1083
AccI	GTMKAC	2 cut(s)	1023, 1167
AccII	CGCG	2 cut(s)	129, 486
AciI	CCGC	9 cut(s)	127, 142, 412, 516, 816, 823, 1031, 1090, 1381
AclWI	GGATC	2 cut(s)	112, 173
AcoI	YGGCCR	2 cut(s)	3, 1014
AcsI	RAATTY	1 cut(s)	623
AcuI	CTGAAG	1 cut(s)	1048
AcyI	GRCGYC	4 cut(s)	427, 727, 1020, 1084
AdeI	CACNNNGTG	1 cut(s)	1282
AfaI	GTAC	2 cut(s)	1316, 1451
AfeI	AGCGCT	1 cut(s)	1189
AfiI	CCNNNNNNNGG	8 cut(s)	301, 421, 736, 822, 1037, 1380, 1396, 1432
AflIII	ACRYGT	1 cut(s)	484
AgsI	TTSAA	4 cut(s)	347, 658, 1153, 1327
AhlI	ACTAGT	1 cut(s)	280
AjiI	CACGTC	1 cut(s)	1396
AjnI	CCWGG	7 cut(s)	173, 186, 325, 381, 722, 828, 1236
Alw21I	GWGCWC	3 cut(s)	324, 969, 1481
Alw26I	GTCTC	3 cut(s)	332, 1214, 1457
AlwI	GGATC	2 cut(s)	112, 173
Ama87I	CYCGRG	1 cut(s)	335
Aor51HI	AGCGCT	1 cut(s)	1189
ApeKI	GCWGC	3 cut(s)	57, 457, 1185
ApoI	RAATTY	1 cut(s)	623
ArsI	GACNNNNNNTTYG	2 cut(s)	1456, 1488
AspLEI	GCGC	5 cut(s)	206, 597, 729, 1086, 1190
AspS9I	GGNCC	8 cut(s)	379, 478, 720, 1240, 1368, 1399, 1423, 1497
AsuC2I	CCSGG	1 cut(s)	1495
AsuHPI	GGTGA	5 cut(s)	220, 461, 509, 517, 1216
AvaI	CYCGRG	1 cut(s)	335
AvaII	GGWCC	7 cut(s)	478, 720, 1240, 1368, 1399, 1423, 1497
BaeGI	GKGCMC	1 cut(s)	1387
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	726, 1083
BanII	GRGCYC	3 cut(s)	135, 969, 1481
BarI	GAAGNNNNNNTAC	2 cut(s)	1307, 1339
BbsI	GAAGAC	1 cut(s)	1482
Bbv12I	GWGCWC	3 cut(s)	324, 969, 1481
BbvI	GCAGC	3 cut(s)	44, 469, 1197
BccI	CCATC	3 cut(s)	265, 1232, 1414
BceAI	ACGGC	6 cut(s)	70, 200, 259, 494, 687, 1265
BcgI	CGANNNNNNTGC	6 cut(s)	1022, 1056, 1301, 1322, 1335, 1356
BciT130I	CCWGG	7 cut(s)	175, 188, 327, 383, 724, 830, 1238
BciVI	GTATCC	1 cut(s)	1301
BcnI	CCSGG	1 cut(s)	1495
BcoDI	GTCTC	3 cut(s)	332, 1214, 1457
BcuI	ACTAGT	1 cut(s)	280
BfaI	CTAG	3 cut(s)	281, 461, 1191
BfmI	CTRYAG	2 cut(s)	1024, 1132
BfoI	RGCGCY	3 cut(s)	730, 1087, 1191
BfuAI	ACCTGC	2 cut(s)	149, 536
BfuI	GTATCC	1 cut(s)	1301
BglI	GCCNNNNNGGC	1 cut(s)	408
BisI	GCNGC	5 cut(s)	58, 412, 458, 824, 1186
BlpI	GCTNAGC	1 cut(s)	61
BlsI	GCNGC	5 cut(s)	59, 413, 459, 825, 1187
Bme1390I	CCNGG	8 cut(s)	175, 188, 327, 383, 724, 830, 1238, 1495
Bme18I	GGWCC	7 cut(s)	478, 720, 1240, 1368, 1399, 1423, 1497
BmeT110I	CYCGRG	1 cut(s)	335
BmgBI	CACGTC	1 cut(s)	1396
BmgT120I	GGNCC	8 cut(s)	379, 478, 720, 1240, 1368, 1399, 1423, 1497
BmiI	GGNNCC	6 cut(s)	479, 728, 827, 1085, 1442, 1499
BmrFI	CCNGG	8 cut(s)	175, 188, 327, 383, 724, 830, 1238, 1495
BmsI	GCATC	2 cut(s)	1053, 1513
BoxI	GACNNNNGTC	1 cut(s)	1373
BpiI	GAAGAC	1 cut(s)	1482
BpmI	CTGGAG	2 cut(s)	540, 812
Bpu1102I	GCTNAGC	1 cut(s)	61
BpuEI	CTTGAG	2 cut(s)	1430, 1468
BpuMI	CCSGG	1 cut(s)	1495
BsaHI	GRCGYC	4 cut(s)	427, 727, 1020, 1084
BsaI	GGTCTC	2 cut(s)	1214, 1457
BsaJI	CCNNGG	9 cut(s)	52, 174, 295, 325, 544, 617, 703, 829, 1356
Bsc4I	CCNNNNNNNGG	8 cut(s)	301, 421, 736, 822, 1037, 1380, 1396, 1432
Bse118I	RCCGGY	2 cut(s)	764, 1037
Bse1I	ACTGG	4 cut(s)	66, 199, 1148, 1514
Bse3DI	GCAATG	2 cut(s)	504, 1317
BseBI	CCWGG	7 cut(s)	175, 188, 327, 383, 724, 830, 1238
BseDI	CCNNGG	9 cut(s)	52, 174, 295, 325, 544, 617, 703, 829, 1356
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	8 cut(s)	301, 421, 736, 822, 1037, 1380, 1396, 1432
BseMI	GCAATG	2 cut(s)	504, 1317
BseMII	CTCAG	3 cut(s)	95, 1093, 1108
BseNI	ACTGG	4 cut(s)	66, 199, 1148, 1514
BseRI	GAGGAG	3 cut(s)	773, 977, 1471
BseSI	GKGCMC	1 cut(s)	1387
BseXI	GCAGC	3 cut(s)	44, 469, 1197
BseYI	CCCAGC	1 cut(s)	819
Bsh1236I	CGCG	2 cut(s)	129, 486
Bsh1285I	CGRYCG	1 cut(s)	1042
BshNI	GGYRCC	2 cut(s)	726, 1083
BsiEI	CGRYCG	1 cut(s)	1042
BsiHKAI	GWGCWC	3 cut(s)	324, 969, 1481
BsiHKCI	CYCGRG	1 cut(s)	335
BsiSI	CCGG	4 cut(s)	765, 1038, 1243, 1495
BslI	CCNNNNNNNGG	8 cut(s)	301, 421, 736, 822, 1037, 1380, 1396, 1432
BsmAI	GTCTC	3 cut(s)	332, 1214, 1457
Bso31I	GGTCTC	2 cut(s)	1214, 1457
BsoBI	CYCGRG	1 cut(s)	335
Bsp1286I	GDGCHC	5 cut(s)	135, 324, 969, 1387, 1481
Bsp143I	GATC	3 cut(s)	117, 165, 899
Bsp1720I	GCTNAGC	1 cut(s)	61
Bsp19I	CCATGG	1 cut(s)	1356
BspACI	CCGC	9 cut(s)	127, 142, 412, 516, 816, 823, 1031, 1090, 1381
BspCNI	CTCAG	3 cut(s)	94, 1092, 1107
BspFNI	CGCG	2 cut(s)	129, 486
BspLI	GGNNCC	6 cut(s)	479, 728, 827, 1085, 1442, 1499
BspMI	ACCTGC	2 cut(s)	149, 536
BspPI	GGATC	2 cut(s)	112, 173
BspQI	GCTCTTC	2 cut(s)	974, 1262
BspT107I	GGYRCC	2 cut(s)	726, 1083
BspTNI	GGTCTC	2 cut(s)	1214, 1457
BsrDI	GCAATG	2 cut(s)	504, 1317
BsrFI	RCCGGY	2 cut(s)	764, 1037
BsrI	ACTGG	4 cut(s)	66, 199, 1148, 1514
BssAI	RCCGGY	2 cut(s)	764, 1037
BssECI	CCNNGG	9 cut(s)	52, 174, 295, 325, 544, 617, 703, 829, 1356
BssMI	GATC	3 cut(s)	117, 165, 899
BssNI	GRCGYC	4 cut(s)	427, 727, 1020, 1084
BssT1I	CCWWGG	3 cut(s)	295, 617, 1356
Bst2UI	CCWGG	7 cut(s)	175, 188, 327, 383, 724, 830, 1238
Bst4CI	ACNGT	5 cut(s)	467, 548, 942, 1427, 1468
Bst6I	CTCTTC	3 cut(s)	53, 974, 1262
BstACI	GRCGYC	4 cut(s)	427, 727, 1020, 1084
BstAPI	GCANNNNNTGC	1 cut(s)	150
BstDEI	CTNAG	4 cut(s)	61, 81, 1079, 1094
BstDSI	CCRYGG	4 cut(s)	52, 544, 703, 1356
BstEII	GGTNACC	2 cut(s)	548, 638
BstF5I	GGATG	1 cut(s)	196
BstFNI	CGCG	2 cut(s)	129, 486
BstH2I	RGCGCY	3 cut(s)	730, 1087, 1191
BstHHI	GCGC	5 cut(s)	206, 597, 729, 1086, 1190
BstKTI	GATC	3 cut(s)	120, 168, 902
BstMAI	GTCTC	3 cut(s)	332, 1214, 1457
BstMBI	GATC	3 cut(s)	117, 165, 899
BstMCI	CGRYCG	1 cut(s)	1042
BstMWI	GCNNNNNNNGC	8 cut(s)	150, 212, 408, 515, 594, 601, 733, 1252
BstNI	CCWGG	7 cut(s)	175, 188, 327, 383, 724, 830, 1238
BstNSI	RCATGY	1 cut(s)	1072
BstPAI	GACNNNNGTC	1 cut(s)	1373
BstPI	GGTNACC	2 cut(s)	548, 638
BstSCI	CCNGG	8 cut(s)	173, 186, 325, 381, 722, 828, 1236, 1493
BstSFI	CTRYAG	2 cut(s)	1024, 1132
BstSLI	GKGCMC	1 cut(s)	1387
BstUI	CGCG	2 cut(s)	129, 486
BstV1I	GCAGC	3 cut(s)	44, 469, 1197
BstV2I	GAAGAC	1 cut(s)	1482
BstX2I	RGATCY	1 cut(s)	117
BstXI	CCANNNNNNTGG	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	1301
BtgI	CCRYGG	4 cut(s)	52, 544, 703, 1356
BtrI	CACGTC	1 cut(s)	1396
BtsCI	GGATG	1 cut(s)	196
BtsIMutI	CAGTG	3 cut(s)	206, 1102, 1141
BveI	ACCTGC	2 cut(s)	149, 536
CfoI	GCGC	5 cut(s)	206, 597, 729, 1086, 1190
Cfr10I	RCCGGY	2 cut(s)	764, 1037
Cfr13I	GGNCC	8 cut(s)	379, 478, 720, 1240, 1368, 1399, 1423, 1497
CseI	GACGC	4 cut(s)	435, 475, 492, 800
CsiI	ACCWGGT	1 cut(s)	1236
Csp6I	GTAC	2 cut(s)	1315, 1450
CviAII	CATG	8 cut(s)	308, 958, 979, 1069, 1160, 1297, 1345, 1357
CviQI	GTAC	2 cut(s)	1315, 1450
DdeI	CTNAG	4 cut(s)	61, 81, 1079, 1094
DinI	GGCGCC	2 cut(s)	728, 1085
DpnI	GATC	3 cut(s)	119, 167, 901
DpnII	GATC	3 cut(s)	117, 165, 899
DraIII	CACNNNGTG	1 cut(s)	1282
DrdI	GACNNNNNNGTC	1 cut(s)	1238
DseDI	GACNNNNNNGTC	1 cut(s)	1238
EaeI	YGGCCR	2 cut(s)	3, 1014
Eam1104I	CTCTTC	3 cut(s)	53, 974, 1262
EarI	CTCTTC	3 cut(s)	53, 974, 1262
EciI	GGCGGA	1 cut(s)	1079
Ecl136II	GAGCTC	2 cut(s)	967, 1479
Eco130I	CCWWGG	3 cut(s)	295, 617, 1356
Eco24I	GRGCYC	3 cut(s)	135, 969, 1481
Eco31I	GGTCTC	2 cut(s)	1214, 1457
Eco47I	GGWCC	7 cut(s)	478, 720, 1240, 1368, 1399, 1423, 1497
Eco47III	AGCGCT	1 cut(s)	1189
Eco53kI	GAGCTC	2 cut(s)	967, 1479
Eco57I	CTGAAG	1 cut(s)	1048
Eco88I	CYCGRG	1 cut(s)	335
Eco91I	GGTNACC	2 cut(s)	548, 638
EcoICRI	GAGCTC	2 cut(s)	967, 1479
EcoO109I	RGGNCCY	1 cut(s)	1368
EcoO65I	GGTNACC	2 cut(s)	548, 638
EcoRII	CCWGG	7 cut(s)	173, 186, 325, 381, 722, 828, 1236
EcoT14I	CCWWGG	3 cut(s)	295, 617, 1356
EcoT38I	GRGCYC	3 cut(s)	135, 969, 1481
EgeI	GGCGCC	2 cut(s)	728, 1085
EheI	GGCGCC	2 cut(s)	728, 1085
ErhI	CCWWGG	3 cut(s)	295, 617, 1356
FaeI	CATG	8 cut(s)	311, 961, 982, 1072, 1163, 1300, 1348, 1360
FatI	CATG	8 cut(s)	307, 957, 978, 1068, 1159, 1296, 1344, 1356
FauI	CCCGC	4 cut(s)	134, 523, 1038, 1374
FblI	GTMKAC	2 cut(s)	1023, 1167
Fnu4HI	GCNGC	5 cut(s)	58, 412, 458, 824, 1186
FokI	GGATG	1 cut(s)	203
FriOI	GRGCYC	3 cut(s)	135, 969, 1481
Fsp4HI	GCNGC	5 cut(s)	58, 412, 458, 824, 1186
FspBI	CTAG	3 cut(s)	281, 461, 1191
GlaI	GCGC	5 cut(s)	205, 596, 728, 1085, 1189
GluI	GCNGC	5 cut(s)	58, 412, 458, 824, 1186
GsaI	CCCAGC	1 cut(s)	823
GsuI	CTGGAG	2 cut(s)	540, 812
HaeII	RGCGCY	3 cut(s)	730, 1087, 1191
HapII	CCGG	4 cut(s)	765, 1038, 1243, 1495
HgaI	GACGC	4 cut(s)	435, 475, 492, 800
HhaI	GCGC	5 cut(s)	206, 597, 729, 1086, 1190
Hin1I	GRCGYC	4 cut(s)	427, 727, 1020, 1084
Hin1II	CATG	8 cut(s)	311, 961, 982, 1072, 1163, 1300, 1348, 1360
Hin6I	GCGC	5 cut(s)	204, 595, 727, 1084, 1188
HinP1I	GCGC	5 cut(s)	204, 595, 727, 1084, 1188
HinfI	GANTC	5 cut(s)	170, 225, 350, 522, 535
HpaII	CCGG	4 cut(s)	765, 1038, 1243, 1495
HphI	GGTGA	5 cut(s)	220, 461, 509, 517, 1216
Hpy166II	GTNNAC	5 cut(s)	286, 707, 1024, 1168, 1207
Hpy188I	TCNGA	5 cut(s)	165, 222, 355, 364, 482
Hpy188III	TCNNGA	3 cut(s)	335, 1327, 1520
Hpy8I	GTNNAC	5 cut(s)	286, 707, 1024, 1168, 1207
Hpy99I	CGWCG	5 cut(s)	293, 486, 794, 1022, 1397
HpyAV	CCTTC	4 cut(s)	257, 488, 711, 1333
HpyCH4III	ACNGT	5 cut(s)	467, 548, 942, 1427, 1468
HpyCH4IV	ACGT	5 cut(s)	288, 874, 1020, 1173, 1395
HpyCH4V	TGCA	2 cut(s)	925, 1288
HpyF10VI	GCNNNNNNNGC	8 cut(s)	150, 212, 408, 515, 594, 601, 733, 1252
HpyF3I	CTNAG	4 cut(s)	61, 81, 1079, 1094
HpySE526I	ACGT	5 cut(s)	288, 874, 1020, 1173, 1395
Hsp92I	GRCGYC	4 cut(s)	427, 727, 1020, 1084
Hsp92II	CATG	8 cut(s)	311, 961, 982, 1072, 1163, 1300, 1348, 1360
HspAI	GCGC	5 cut(s)	204, 595, 727, 1084, 1188
KasI	GGCGCC	2 cut(s)	726, 1083
KroI	GCCGGC	1 cut(s)	764
KroNI	GCCGGC	1 cut(s)	766
Kzo9I	GATC	3 cut(s)	117, 165, 899
LguI	GCTCTTC	2 cut(s)	974, 1262
LmnI	GCTCC	6 cut(s)	327, 355, 786, 831, 964, 1484
Lsp1109I	GCAGC	3 cut(s)	44, 469, 1197
LweI	GCATC	2 cut(s)	1053, 1513
MabI	ACCWGGT	1 cut(s)	1236
MaeI	CTAG	3 cut(s)	281, 461, 1191
MaeII	ACGT	5 cut(s)	288, 874, 1020, 1173, 1395
MaeIII	GTNAC	5 cut(s)	467, 523, 548, 638, 974
MalI	GATC	3 cut(s)	119, 167, 901
MboI	GATC	3 cut(s)	117, 165, 899
MboII	GAAGA	7 cut(s)	40, 359, 961, 994, 1105, 1249, 1482
MflI	RGATCY	1 cut(s)	117
MhlI	GDGCHC	5 cut(s)	135, 324, 969, 1387, 1481
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	623
MluI	ACGCGT	1 cut(s)	484
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	2 cut(s)	727, 1084
MlyI	GAGTC	3 cut(s)	179, 529, 531
MmeI	TCCRAC	2 cut(s)	143, 505
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	764
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	1528
MslI	CAYNNNNRTG	1 cut(s)	983
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	3 cut(s)	109, 518, 823
MspI	CCGG	4 cut(s)	765, 1038, 1243, 1495
MspR9I	CCNGG	8 cut(s)	175, 188, 327, 383, 724, 830, 1238, 1495
MvaI	CCWGG	7 cut(s)	175, 188, 327, 383, 724, 830, 1238
MvnI	CGCG	2 cut(s)	129, 486
MwoI	GCNNNNNNNGC	8 cut(s)	150, 212, 408, 515, 594, 601, 733, 1252
NaeI	GCCGGC	1 cut(s)	766
NarI	GGCGCC	2 cut(s)	727, 1084
NciI	CCSGG	1 cut(s)	1495
NcoI	CCATGG	1 cut(s)	1356
NdeII	GATC	3 cut(s)	117, 165, 899
NgoMIV	GCCGGC	1 cut(s)	764
NlaIII	CATG	8 cut(s)	311, 961, 982, 1072, 1163, 1300, 1348, 1360
NlaIV	GGNNCC	6 cut(s)	479, 728, 827, 1085, 1442, 1499
NmeAIII	GCCGAG	1 cut(s)	1126
NmuCI	GTSAC	3 cut(s)	467, 523, 974
NspI	RCATGY	1 cut(s)	1072
PaeI	GCATGC	1 cut(s)	1072
PaqCI	CACCTGC	1 cut(s)	536
PciSI	GCTCTTC	2 cut(s)	974, 1262
PcsI	WCGNNNNNNNCGW	2 cut(s)	885, 1215
PdiI	GCCGGC	1 cut(s)	766
PfeI	GAWTC	2 cut(s)	225, 350
PflFI	GACNNNGTC	3 cut(s)	884, 1238, 1397
PkrI	GCNGC	5 cut(s)	59, 413, 459, 825, 1187
PleI	GAGTC	3 cut(s)	178, 529, 530
PluTI	GGCGCC	2 cut(s)	730, 1087
PpsI	GAGTC	3 cut(s)	178, 529, 530
PpuMI	RGGWCCY	1 cut(s)	1368
PshAI	GACNNNNGTC	1 cut(s)	1373
Psp124BI	GAGCTC	2 cut(s)	969, 1481
Psp5II	RGGWCCY	1 cut(s)	1368
Psp6I	CCWGG	7 cut(s)	173, 186, 325, 381, 722, 828, 1236
PspEI	GGTNACC	2 cut(s)	548, 638
PspFI	CCCAGC	1 cut(s)	819
PspGI	CCWGG	7 cut(s)	173, 186, 325, 381, 722, 828, 1236
PspN4I	GGNNCC	6 cut(s)	479, 728, 827, 1085, 1442, 1499
PspPI	GGNCC	8 cut(s)	379, 478, 720, 1240, 1368, 1399, 1423, 1497
PspPPI	RGGWCCY	1 cut(s)	1368
PsrI	GAACNNNNNNTAC	2 cut(s)	1433, 1465
PsuI	RGATCY	1 cut(s)	117
PsyI	GACNNNGTC	3 cut(s)	884, 1238, 1397
PvuII	CAGCTG	1 cut(s)	109
RsaI	GTAC	2 cut(s)	1316, 1451
RsaNI	GTAC	2 cut(s)	1315, 1450
RseI	CAYNNNNRTG	1 cut(s)	983
SacI	GAGCTC	2 cut(s)	969, 1481
SapI	GCTCTTC	2 cut(s)	974, 1262
SaqAI	TTAA	1 cut(s)	1528
SatI	GCNGC	5 cut(s)	58, 412, 458, 824, 1186
Sau3AI	GATC	3 cut(s)	117, 165, 899
Sau96I	GGNCC	8 cut(s)	379, 478, 720, 1240, 1368, 1399, 1423, 1497
SchI	GAGTC	3 cut(s)	179, 529, 531
ScrFI	CCNGG	8 cut(s)	175, 188, 327, 383, 724, 830, 1238, 1495
SduI	GDGCHC	5 cut(s)	135, 324, 969, 1387, 1481
SexAI	ACCWGGT	1 cut(s)	1236
SfaNI	GCATC	2 cut(s)	1053, 1513
SfcI	CTRYAG	2 cut(s)	1024, 1132
SfiI	GGCCNNNNNGGCC	1 cut(s)	408
SfoI	GGCGCC	2 cut(s)	728, 1085
SinI	GGWCC	7 cut(s)	478, 720, 1240, 1368, 1399, 1423, 1497
SmiMI	CAYNNNNRTG	1 cut(s)	983
SmlI	CTYRAG	2 cut(s)	1445, 1483
SmoI	CTYRAG	2 cut(s)	1445, 1483
SpeI	ACTAGT	1 cut(s)	280
SphI	GCATGC	1 cut(s)	1072
Sse9I	AATT	1 cut(s)	623
SsiI	CCGC	9 cut(s)	127, 142, 412, 516, 816, 823, 1031, 1090, 1381
SspDI	GGCGCC	2 cut(s)	726, 1083
SspMI	CTAG	3 cut(s)	281, 461, 1191
SstI	GAGCTC	2 cut(s)	969, 1481
StyD4I	CCNGG	8 cut(s)	173, 186, 325, 381, 722, 828, 1236, 1493
StyI	CCWWGG	3 cut(s)	295, 617, 1356
TaaI	ACNGT	5 cut(s)	467, 548, 942, 1427, 1468
TaiI	ACGT	5 cut(s)	291, 877, 1023, 1176, 1398
TaqI	TCGA	5 cut(s)	168, 771, 804, 879, 888
TaqII	GACCGA	1 cut(s)	1346
TasI	AATT	1 cut(s)	623
TatI	WGTACW	2 cut(s)	1314, 1449
TauI	GCSGC	2 cut(s)	414, 826
TfiI	GAWTC	2 cut(s)	225, 350
Tru1I	TTAA	1 cut(s)	1528
Tru9I	TTAA	1 cut(s)	1528
TscAI	CASTG	3 cut(s)	206, 1102, 1148
TseFI	GTSAC	3 cut(s)	467, 523, 974
TseI	GCWGC	3 cut(s)	57, 457, 1185
Tsp45I	GTSAC	3 cut(s)	467, 523, 974
TspDTI	ATGAA	6 cut(s)	960, 995, 1001, 1176, 1249, 1364
TspGWI	ACGGA	2 cut(s)	1320, 1363
TspRI	CASTG	3 cut(s)	206, 1102, 1148
Tth111I	GACNNNGTC	3 cut(s)	884, 1238, 1397
VpaK11BI	GGWCC	7 cut(s)	478, 720, 1240, 1368, 1399, 1423, 1497
XapI	RAATTY	1 cut(s)	623
XceI	RCATGY	1 cut(s)	1072
XmiI	GTMKAC	2 cut(s)	1023, 1167
XspI	CTAG	3 cut(s)	281, 461, 1191
ZraI	GACGTC	1 cut(s)	1021

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.