Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Forward (+)

49650756 .. 49652585

Gene Structure 1830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G026260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1542 bp

ATGGCAAAGCATTTAGCTCTCGCCTTTTCTCTTTGCTTGCTTGTTCTCTTCCACGGCTGCTTAGCCAGACGCCAACAATCTCAGTCCAGCCAGCAAAATGAGTGCCAGCTGAACCAGATCCAAGCCCGCGAGCCTGACAACCGTATTGAGACTGAAGCAGGTCGGATTGAGTCATGGGACTACAACCAGGATGACTTGCAGTGCGCTGGTGTCGCTGTTCAAAGAATCACCATTGAGCGTAATGGCCTTCACTTGCCTTCTTACACTAACACTCCAAGGCTTGCATACGTTGTACAAGGTAGGGGTCATCTAGGGATGGTATTCCCTGGCTGTCCTGAGACATTTGAGGAGTCTGAGCAATCTGATGAAGAACAACAGGGTCAGCAACAACAATGGCAAGGCCAACAACGGGGCCGCCAGCAACAGGGACGCCGACAAGGACAATTCGGACAGCAAGGCCAACAAGGACAACAAGACTTTGAACAGCTAGACCGACACCAGAGGGTGCGACGTGTCAAAGAAGGTGATGTTATCGCAATCCCCGCCGGAGTCACAACCTGGTCTCACAACGACGGTGACAGATCTCTTGTTTTTGTTACTCTTTTAGACATCGGCAATAACCACAACCAGCTTGACCAAAACCCAAGGCGATTTTATCTTGCTGGTAACCCACAAGATGAGTTCAACCAACAAGGCCAAAGCCAAAGGAGACGACAAGGACAACAAGGACAACAAGAAAGGAGCAGGCAGCAACGGCAGGGAAACAACAACAACAACATCTATGCCGGCTTCGAGACACAGCTCCTCGCCGACGCTCTCAACATCGACCAACAGACTGCCCAGCAGCTCCAGGGACAGAACGACAACAGGCCACAGATTGTTCGGGTTCAGGGACGTCTCGACTTTGTCGAGCCACCACAGTCACAGAGGGAGGAAAGACAACTGCAAGGACAACAAGGACAACAGGGACAGAATGGCCTTGAGGAGCTATTCTGCCACATGAAGATCAAGCAGAACATCGGCAAGCCTTCATTGGCCGACGTCTTCAGCCCGCAAGCCGGTCGCATCAGCACCCTCAACAGCTTTAGCCTGCCTATTCTCAGGCACCTCCGCCTCAGTGCTGAGAGAGGCTTCTTGTACAACAATGCTATCCACAGCCCACACTGGAACTTGAATGCCCATGAGATCGTCTATGTCATCAGAGGTAGCGCCAGGGTTCAGGTGGTGAACGACAACGGCGAGACCATCTTGGACGACCAGGTCCGCCAGGGACAGCTCTTCGTCGTGCCACAGAACCACGCCGTGTTGCAGAAGGCCATGAGCAACGGATACGAGTACATTGCCTTCAAGACCGATGAAAATGCCATGGTCAACACTCTGGCTGGCAGGACCTCCGTCCTGCGGGCACTCCCCGACGTGGTCCTCGCCAACGCCTACCAGATGGACCGTGAGCAGGCAAGGAACCTCAAATACAACAGGCAGGAGACCCTTGCCTTGAGCTCCTCAAGGTCTTCCCAGTCACAGAGGTCCTGGTGGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

513

Amino Acids

58.58

Weight (kDa)

6.91

Isoelectric Point (pI)

65.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	41 - 224	1.4e-26	Cupin
Cupin_1	PF00190	339 - 486	2.7e-40	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1259
AatII	GACGTC	2 cut(s)	898, 1044
Acc36I	ACCTGC	1 cut(s)	149
AccB1I	GGYRCC	1 cut(s)	1104
AccII	CGCG	1 cut(s)	129
AciI	CCGC	7 cut(s)	127, 415, 543, 1052, 1111, 1264, 1402
AclWI	GGATC	1 cut(s)	112
AcoI	YGGCCR	1 cut(s)	1035
AcuI	CTGAAG	2 cut(s)	174, 1030
AcyI	GRCGYC	4 cut(s)	70, 430, 895, 1041
AdeI	CACNNNGTG	1 cut(s)	1303
AfaI	GTAC	3 cut(s)	294, 1139, 1337
AfiI	CCNNNNNNNGG	6 cut(s)	409, 424, 1058, 1401, 1417, 1453
AflIII	ACRYGT	1 cut(s)	511
AgsI	TTSAA	5 cut(s)	221, 482, 685, 1174, 1348
AjiI	CACGTC	2 cut(s)	512, 1417
AjnI	CCWGG	8 cut(s)	186, 325, 557, 849, 1211, 1257, 1266, 1529
Alw21I	GWGCWC	1 cut(s)	1502
Alw26I	GTCTC	8 cut(s)	143, 332, 567, 703, 788, 902, 1235, 1478
AlwI	GGATC	1 cut(s)	112
AoxI	GGCC	9 cut(s)	244, 400, 412, 457, 694, 869, 976, 1035, 1314
ApeKI	GCWGC	3 cut(s)	57, 748, 844
AspLEI	GCGC	2 cut(s)	206, 1211
AspS9I	GGNCC	6 cut(s)	412, 1261, 1389, 1420, 1444, 1527
AsuHPI	GGTGA	4 cut(s)	220, 536, 587, 1237
AvaII	GGWCC	5 cut(s)	1261, 1389, 1420, 1444, 1527
BaeGI	GKGCMC	1 cut(s)	1408
BanI	GGYRCC	1 cut(s)	1104
BanII	GRGCYC	1 cut(s)	1502
BarI	GAAGNNNNNNTAC	2 cut(s)	1328, 1360
BbsI	GAAGAC	2 cut(s)	1036, 1503
Bbv12I	GWGCWC	1 cut(s)	1502
BbvI	GCAGC	3 cut(s)	44, 760, 856
BccI	CCATC	3 cut(s)	310, 1253, 1435
BceAI	ACGGC	4 cut(s)	70, 770, 1252, 1286
BcgI	CGANNNNNNTGC	6 cut(s)	1043, 1077, 1322, 1343, 1356, 1377
BciT130I	CCWGG	8 cut(s)	188, 327, 559, 851, 1213, 1259, 1268, 1531
BciVI	GTATCC	1 cut(s)	1322
BcoDI	GTCTC	8 cut(s)	143, 332, 567, 703, 788, 902, 1235, 1478
BfaI	CTAG	2 cut(s)	311, 488
BfoI	RGCGCY	1 cut(s)	1212
BfuAI	ACCTGC	1 cut(s)	149
BfuI	GTATCC	1 cut(s)	1322
BglII	AGATCT	1 cut(s)	581
BisI	GCNGC	4 cut(s)	58, 415, 749, 845
BlpI	GCTNAGC	1 cut(s)	61
BlsI	GCNGC	4 cut(s)	59, 416, 750, 846
Bme1390I	CCNGG	8 cut(s)	188, 327, 559, 851, 1213, 1259, 1268, 1531
Bme18I	GGWCC	5 cut(s)	1261, 1389, 1420, 1444, 1527
BmgBI	CACGTC	2 cut(s)	512, 1417
BmgT120I	GGNCC	6 cut(s)	412, 1261, 1389, 1420, 1444, 1527
BmiI	GGNNCC	3 cut(s)	413, 1106, 1463
BmrFI	CCNGG	8 cut(s)	188, 327, 559, 851, 1213, 1259, 1268, 1531
BmrI	ACTGGG	1 cut(s)	1510
BmsI	GCATC	1 cut(s)	1074
BmuI	ACTGGG	1 cut(s)	1510
BoxI	GACNNNNGTC	1 cut(s)	1394
BpiI	GAAGAC	2 cut(s)	1036, 1503
BpmI	CTGGAG	1 cut(s)	833
Bpu1102I	GCTNAGC	1 cut(s)	61
BpuEI	CTTGAG	3 cut(s)	1001, 1489, 1516
BsaHI	GRCGYC	4 cut(s)	70, 430, 895, 1041
BsaI	GGTCTC	3 cut(s)	567, 1235, 1478
BsaJI	CCNNGG	8 cut(s)	52, 275, 325, 644, 850, 1212, 1267, 1365
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bsc4I	CCNNNNNNNGG	6 cut(s)	409, 424, 1058, 1401, 1417, 1453
Bse118I	RCCGGY	2 cut(s)	785, 1058
Bse1I	ACTGG	2 cut(s)	1169, 1516
Bse3DI	GCAATG	1 cut(s)	1338
BseBI	CCWGG	8 cut(s)	188, 327, 559, 851, 1213, 1259, 1268, 1531
BseDI	CCNNGG	8 cut(s)	52, 275, 325, 644, 850, 1212, 1267, 1365
BseGI	GGATG	2 cut(s)	196, 321
BseLI	CCNNNNNNNGG	6 cut(s)	409, 424, 1058, 1401, 1417, 1453
BseMI	GCAATG	1 cut(s)	1338
BseMII	CTCAG	6 cut(s)	95, 327, 345, 1113, 1114, 1129
BseNI	ACTGG	2 cut(s)	1169, 1516
BseRI	GAGGAG	4 cut(s)	362, 794, 998, 1492
BseSI	GKGCMC	1 cut(s)	1408
BseXI	GCAGC	3 cut(s)	44, 760, 856
BseYI	CCCAGC	1 cut(s)	840
Bsh1236I	CGCG	1 cut(s)	129
Bsh1285I	CGRYCG	1 cut(s)	1063
BshFI	GGCC	9 cut(s)	246, 402, 414, 459, 696, 871, 978, 1037, 1316
BshNI	GGYRCC	1 cut(s)	1104
BsiEI	CGRYCG	1 cut(s)	1063
BsiHKAI	GWGCWC	1 cut(s)	1502
BsiSI	CCGG	3 cut(s)	546, 786, 1059
BslFI	GGGAC	6 cut(s)	191, 441, 867, 906, 981, 1284
BslI	CCNNNNNNNGG	6 cut(s)	409, 424, 1058, 1401, 1417, 1453
BsmAI	GTCTC	8 cut(s)	143, 332, 567, 703, 788, 902, 1235, 1478
BsmBI	CGTCTC	2 cut(s)	703, 902
BsmFI	GGGAC	6 cut(s)	191, 441, 867, 906, 981, 1284
BsmI	GAATGC	1 cut(s)	1180
BsnI	GGCC	9 cut(s)	246, 402, 414, 459, 696, 871, 978, 1037, 1316
Bso31I	GGTCTC	3 cut(s)	567, 1235, 1478
Bsp1286I	GDGCHC	2 cut(s)	1408, 1502
Bsp1407I	TGTACA	2 cut(s)	292, 1137
Bsp143I	GATC	4 cut(s)	117, 581, 1005, 1185
Bsp1720I	GCTNAGC	1 cut(s)	61
Bsp19I	CCATGG	1 cut(s)	1365
BspACI	CCGC	7 cut(s)	127, 415, 543, 1052, 1111, 1264, 1402
BspANI	GGCC	9 cut(s)	246, 402, 414, 459, 696, 871, 978, 1037, 1316
BspCNI	CTCAG	6 cut(s)	94, 328, 346, 1113, 1114, 1128
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	3 cut(s)	413, 1106, 1463
BspMI	ACCTGC	1 cut(s)	149
BspPI	GGATC	1 cut(s)	112
BspQI	GCTCTTC	1 cut(s)	1283
BspT107I	GGYRCC	1 cut(s)	1104
BspTNI	GGTCTC	3 cut(s)	567, 1235, 1478
BsrDI	GCAATG	1 cut(s)	1338
BsrFI	RCCGGY	2 cut(s)	785, 1058
BsrGI	TGTACA	2 cut(s)	292, 1137
BsrI	ACTGG	2 cut(s)	1169, 1516
BssAI	RCCGGY	2 cut(s)	785, 1058
BssECI	CCNNGG	8 cut(s)	52, 275, 325, 644, 850, 1212, 1267, 1365
BssMI	GATC	4 cut(s)	117, 581, 1005, 1185
BssNI	GRCGYC	4 cut(s)	70, 430, 895, 1041
BssT1I	CCWWGG	3 cut(s)	275, 644, 1365
Bst2UI	CCWGG	8 cut(s)	188, 327, 559, 851, 1213, 1259, 1268, 1531
Bst4CI	ACNGT	4 cut(s)	143, 575, 921, 1448
Bst6I	CTCTTC	2 cut(s)	53, 1283
BstACI	GRCGYC	4 cut(s)	70, 430, 895, 1041
BstAUI	TGTACA	2 cut(s)	292, 1137
BstDEI	CTNAG	7 cut(s)	61, 81, 336, 354, 1100, 1115, 1122
BstDSI	CCRYGG	2 cut(s)	52, 1365
BstEII	GGTNACC	1 cut(s)	665
BstF5I	GGATG	2 cut(s)	196, 321
BstFNI	CGCG	1 cut(s)	129
BstH2I	RGCGCY	1 cut(s)	1212
BstHHI	GCGC	2 cut(s)	206, 1211
BstKTI	GATC	4 cut(s)	120, 584, 1008, 1188
BstMAI	GTCTC	8 cut(s)	143, 332, 567, 703, 788, 902, 1235, 1478
BstMBI	GATC	4 cut(s)	117, 581, 1005, 1185
BstMCI	CGRYCG	1 cut(s)	1063
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 542, 754
BstNI	CCWGG	8 cut(s)	188, 327, 559, 851, 1213, 1259, 1268, 1531
BstPAI	GACNNNNGTC	1 cut(s)	1394
BstPI	GGTNACC	1 cut(s)	665
BstSCI	CCNGG	8 cut(s)	186, 325, 557, 849, 1211, 1257, 1266, 1529
BstSLI	GKGCMC	1 cut(s)	1408
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	3 cut(s)	44, 760, 856
BstV2I	GAAGAC	2 cut(s)	1036, 1503
BstX2I	RGATCY	2 cut(s)	117, 581
BstYI	RGATCY	2 cut(s)	117, 581
BsuI	GTATCC	1 cut(s)	1322
BsuRI	GGCC	9 cut(s)	246, 402, 414, 459, 696, 871, 978, 1037, 1316
BtgI	CCRYGG	2 cut(s)	52, 1365
BtrI	CACGTC	2 cut(s)	512, 1417
BtsCI	GGATG	2 cut(s)	196, 321
BtsI	GCAGTG	1 cut(s)	206
BtsIMutI	CAGTG	3 cut(s)	206, 1123, 1162
BveI	ACCTGC	1 cut(s)	149
CfoI	GCGC	2 cut(s)	206, 1211
Cfr10I	RCCGGY	2 cut(s)	785, 1058
Cfr13I	GGNCC	6 cut(s)	412, 1261, 1389, 1420, 1444, 1527
CseI	GACGC	3 cut(s)	78, 438, 821
CsiI	ACCWGGT	2 cut(s)	557, 1257
Csp6I	GTAC	3 cut(s)	293, 1138, 1336
CviAII	CATG	5 cut(s)	174, 1000, 1181, 1318, 1366
CviQI	GTAC	3 cut(s)	293, 1138, 1336
DdeI	CTNAG	7 cut(s)	61, 81, 336, 354, 1100, 1115, 1122
DpnI	GATC	4 cut(s)	119, 583, 1007, 1187
DpnII	GATC	4 cut(s)	117, 581, 1005, 1185
DraIII	CACNNNGTG	1 cut(s)	1303
DrdI	GACNNNNNNGTC	1 cut(s)	1259
DseDI	GACNNNNNNGTC	1 cut(s)	1259
EaeI	YGGCCR	1 cut(s)	1035
Eam1104I	CTCTTC	2 cut(s)	53, 1283
EarI	CTCTTC	2 cut(s)	53, 1283
EciI	GGCGGA	2 cut(s)	1100, 1253
Ecl136II	GAGCTC	1 cut(s)	1500
Eco130I	CCWWGG	3 cut(s)	275, 644, 1365
Eco24I	GRGCYC	1 cut(s)	1502
Eco31I	GGTCTC	3 cut(s)	567, 1235, 1478
Eco47I	GGWCC	5 cut(s)	1261, 1389, 1420, 1444, 1527
Eco53kI	GAGCTC	1 cut(s)	1500
Eco57I	CTGAAG	2 cut(s)	174, 1030
Eco91I	GGTNACC	1 cut(s)	665
EcoICRI	GAGCTC	1 cut(s)	1500
EcoO109I	RGGNCCY	2 cut(s)	1389, 1527
EcoO65I	GGTNACC	1 cut(s)	665
EcoRII	CCWGG	8 cut(s)	186, 325, 557, 849, 1211, 1257, 1266, 1529
EcoT14I	CCWWGG	3 cut(s)	275, 644, 1365
EcoT38I	GRGCYC	1 cut(s)	1502
ErhI	CCWWGG	3 cut(s)	275, 644, 1365
Esp3I	CGTCTC	2 cut(s)	703, 902
FaeI	CATG	5 cut(s)	177, 1003, 1184, 1321, 1369
FaiI	YATR	8 cut(s)	175, 286, 783, 1001, 1182, 1194, 1319, 1367
FaqI	GGGAC	6 cut(s)	191, 441, 867, 906, 981, 1284
FatI	CATG	5 cut(s)	173, 999, 1180, 1317, 1365
FauI	CCCGC	4 cut(s)	134, 550, 1059, 1395
Fnu4HI	GCNGC	4 cut(s)	58, 415, 749, 845
FokI	GGATG	2 cut(s)	203, 328
FriOI	GRGCYC	1 cut(s)	1502
Fsp4HI	GCNGC	4 cut(s)	58, 415, 749, 845
FspBI	CTAG	2 cut(s)	311, 488
GlaI	GCGC	2 cut(s)	205, 1210
GluI	GCNGC	4 cut(s)	58, 415, 749, 845
GsaI	CCCAGC	1 cut(s)	844
GsuI	CTGGAG	1 cut(s)	833
HaeII	RGCGCY	1 cut(s)	1212
HaeIII	GGCC	9 cut(s)	246, 402, 414, 459, 696, 871, 978, 1037, 1316
HapII	CCGG	3 cut(s)	546, 786, 1059
HgaI	GACGC	3 cut(s)	78, 438, 821
HhaI	GCGC	2 cut(s)	206, 1211
Hin1I	GRCGYC	4 cut(s)	70, 430, 895, 1041
Hin1II	CATG	5 cut(s)	177, 1003, 1184, 1321, 1369
Hin6I	GCGC	2 cut(s)	204, 1209
HinP1I	GCGC	2 cut(s)	204, 1209
HincII	GTYRAC	1 cut(s)	1372
HindII	GTYRAC	1 cut(s)	1372
HinfI	GANTC	4 cut(s)	170, 225, 350, 549
HpaII	CCGG	3 cut(s)	546, 786, 1059
HphI	GGTGA	4 cut(s)	220, 536, 587, 1237
Hpy166II	GTNNAC	2 cut(s)	1228, 1372
Hpy188I	TCNGA	5 cut(s)	165, 355, 364, 449, 1202
Hpy188III	TCNNGA	4 cut(s)	335, 793, 899, 1348
Hpy8I	GTNNAC	2 cut(s)	1228, 1372
Hpy99I	CGWCG	6 cut(s)	513, 575, 815, 1043, 1286, 1418
HpyAV	CCTTC	6 cut(s)	257, 267, 515, 1038, 1306, 1354
HpyCH4III	ACNGT	4 cut(s)	143, 575, 921, 1448
HpyCH4IV	ACGT	5 cut(s)	288, 511, 895, 1041, 1416
HpyCH4V	TGCA	4 cut(s)	199, 284, 946, 1309
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 542, 754
HpyF3I	CTNAG	7 cut(s)	61, 81, 336, 354, 1100, 1115, 1122
HpySE526I	ACGT	5 cut(s)	288, 511, 895, 1041, 1416
Hsp92I	GRCGYC	4 cut(s)	70, 430, 895, 1041
Hsp92II	CATG	5 cut(s)	177, 1003, 1184, 1321, 1369
HspAI	GCGC	2 cut(s)	204, 1209
KroI	GCCGGC	1 cut(s)	785
KroNI	GCCGGC	1 cut(s)	787
Kzo9I	GATC	4 cut(s)	117, 581, 1005, 1185
LguI	GCTCTTC	1 cut(s)	1283
LmnI	GCTCC	5 cut(s)	741, 807, 852, 985, 1505
Lsp1109I	GCAGC	3 cut(s)	44, 760, 856
LweI	GCATC	1 cut(s)	1074
MabI	ACCWGGT	2 cut(s)	557, 1257
MaeI	CTAG	2 cut(s)	311, 488
MaeII	ACGT	5 cut(s)	288, 511, 895, 1041, 1416
MaeIII	GTNAC	6 cut(s)	550, 575, 595, 665, 921, 1518
MalI	GATC	4 cut(s)	119, 583, 1007, 1187
MboI	GATC	4 cut(s)	117, 581, 1005, 1185
MboII	GAAGA	6 cut(s)	40, 380, 1015, 1036, 1270, 1503
MflI	RGATCY	2 cut(s)	117, 581
MhlI	GDGCHC	2 cut(s)	1408, 1502
MluCI	AATT	1 cut(s)	443
MlyI	GAGTC	3 cut(s)	179, 359, 558
MmeI	TCCRAC	1 cut(s)	143
MroNI	GCCGGC	1 cut(s)	785
MspA1I	CMGCKG	1 cut(s)	109
MspI	CCGG	3 cut(s)	546, 786, 1059
MspR9I	CCNGG	8 cut(s)	188, 327, 559, 851, 1213, 1259, 1268, 1531
Mva1269I	GAATGC	1 cut(s)	1180
MvaI	CCWGG	8 cut(s)	188, 327, 559, 851, 1213, 1259, 1268, 1531
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	3 cut(s)	212, 542, 754
NaeI	GCCGGC	1 cut(s)	787
NcoI	CCATGG	1 cut(s)	1365
NdeII	GATC	4 cut(s)	117, 581, 1005, 1185
NgoMIV	GCCGGC	1 cut(s)	785
NlaIII	CATG	5 cut(s)	177, 1003, 1184, 1321, 1369
NlaIV	GGNNCC	3 cut(s)	413, 1106, 1463
NmuCI	GTSAC	4 cut(s)	550, 575, 921, 1518
PciSI	GCTCTTC	1 cut(s)	1283
PcsI	WCGNNNNNNNCGW	2 cut(s)	906, 1236
PctI	GAATGC	1 cut(s)	1180
PdiI	GCCGGC	1 cut(s)	787
PfeI	GAWTC	1 cut(s)	225
PflFI	GACNNNGTC	3 cut(s)	905, 1259, 1418
PkrI	GCNGC	4 cut(s)	59, 416, 750, 846
PleI	GAGTC	3 cut(s)	178, 358, 557
PpsI	GAGTC	3 cut(s)	178, 358, 557
PpuMI	RGGWCCY	2 cut(s)	1389, 1527
PshAI	GACNNNNGTC	1 cut(s)	1394
Psp124BI	GAGCTC	1 cut(s)	1502
Psp5II	RGGWCCY	2 cut(s)	1389, 1527
Psp6I	CCWGG	8 cut(s)	186, 325, 557, 849, 1211, 1257, 1266, 1529
PspEI	GGTNACC	1 cut(s)	665
PspFI	CCCAGC	1 cut(s)	840
PspGI	CCWGG	8 cut(s)	186, 325, 557, 849, 1211, 1257, 1266, 1529
PspN4I	GGNNCC	3 cut(s)	413, 1106, 1463
PspPI	GGNCC	6 cut(s)	412, 1261, 1389, 1420, 1444, 1527
PspPPI	RGGWCCY	2 cut(s)	1389, 1527
PsrI	GAACNNNNNNTAC	2 cut(s)	1454, 1486
PsuI	RGATCY	2 cut(s)	117, 581
PsyI	GACNNNGTC	3 cut(s)	905, 1259, 1418
PvuII	CAGCTG	1 cut(s)	109
RsaI	GTAC	3 cut(s)	294, 1139, 1337
RsaNI	GTAC	3 cut(s)	293, 1138, 1336
SacI	GAGCTC	1 cut(s)	1502
SapI	GCTCTTC	1 cut(s)	1283
SatI	GCNGC	4 cut(s)	58, 415, 749, 845
Sau3AI	GATC	4 cut(s)	117, 581, 1005, 1185
Sau96I	GGNCC	6 cut(s)	412, 1261, 1389, 1420, 1444, 1527
SchI	GAGTC	3 cut(s)	179, 359, 558
ScrFI	CCNGG	8 cut(s)	188, 327, 559, 851, 1213, 1259, 1268, 1531
SduI	GDGCHC	2 cut(s)	1408, 1502
SexAI	ACCWGGT	2 cut(s)	557, 1257
SfaNI	GCATC	1 cut(s)	1074
SinI	GGWCC	5 cut(s)	1261, 1389, 1420, 1444, 1527
SmlI	CTYRAG	3 cut(s)	980, 1495, 1504
SmoI	CTYRAG	3 cut(s)	980, 1495, 1504
Sse9I	AATT	1 cut(s)	443
SsiI	CCGC	7 cut(s)	127, 415, 543, 1052, 1111, 1264, 1402
SspMI	CTAG	2 cut(s)	311, 488
SstI	GAGCTC	1 cut(s)	1502
StyD4I	CCNGG	8 cut(s)	186, 325, 557, 849, 1211, 1257, 1266, 1529
StyI	CCWWGG	3 cut(s)	275, 644, 1365
TaaI	ACNGT	4 cut(s)	143, 575, 921, 1448
TaiI	ACGT	5 cut(s)	291, 514, 898, 1044, 1419
TaqI	TCGA	4 cut(s)	792, 825, 900, 909
TaqII	GACCGA	2 cut(s)	507, 1367
TasI	AATT	1 cut(s)	443
TatI	WGTACW	3 cut(s)	292, 1137, 1335
TauI	GCSGC	1 cut(s)	417
TfiI	GAWTC	1 cut(s)	225
TscAI	CASTG	3 cut(s)	206, 1123, 1169
TseFI	GTSAC	4 cut(s)	550, 575, 921, 1518
TseI	GCWGC	3 cut(s)	57, 748, 844
Tsp45I	GTSAC	4 cut(s)	550, 575, 921, 1518
TspDTI	ATGAA	4 cut(s)	381, 1016, 1020, 1371
TspGWI	ACGGA	2 cut(s)	1341, 1384
TspRI	CASTG	3 cut(s)	206, 1123, 1169
Tth111I	GACNNNGTC	3 cut(s)	905, 1259, 1418
VpaK11BI	GGWCC	5 cut(s)	1261, 1389, 1420, 1444, 1527
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1219
XspI	CTAG	2 cut(s)	311, 488
ZraI	GACGTC	2 cut(s)	896, 1042

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.