Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Forward (+)

5299935 .. 5302258

Gene Structure 2324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0041100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCTCTGCACTTCGCTCCTCGCAGCTCATCGCTTTGTCTGTGATGGCGTAGATAGCCCCTGTGTTCGCAAATTCAATCAAGAGGTCCAAACGGTGCTGCTGCTGGTGTTGGTGTCCAGCACTCTCAACATGGTATGCTGTCGTCCTGGGTTGAAAGTTTTGACCCCTTATTCATCTGAAGATGCTCATGGACTGCTAAAAGCTGCCATTAGGGACCCTGATCGTGTTCTTTTTCTTGGCAATGAGTTGCTGGAATCAATGCCGGAGATGTTGAAGCTTCAGGACGCAGGGATCTACATCTGGCAACTTCACCAAGAAGGTAAAGCAAACTTCACCTCCGAATTTTTGGAAAACTTGACTGGAATTAAATGTTTATCTGAGGCCAAAGTCGATAAGATTTATAAAGCTGCTGAGAAGATAGTGATTAGTGCTCAAACTTGTCATAATCTGAAATCCATTGTCTTCATCAGTTCCAACTTCAATGGGGACACAAGAGGCATCCGTAAGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

170

Amino Acids

18.89

Weight (kDa)

7.56

Isoelectric Point (pI)

21.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	402
AclWI	GGATC	1 cut(s)	299
AcsI	RAATTY	2 cut(s)	71, 341
AcuI	CTGAAG	2 cut(s)	198, 263
AgsI	TTSAA	4 cut(s)	76, 154, 274, 481
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	4 cut(s)	26, 203, 277, 407
AluI	AGCT	4 cut(s)	26, 203, 277, 407
Alw21I	GWGCWC	1 cut(s)	433
AlwI	GGATC	1 cut(s)	299
AoxI	GGCC	1 cut(s)	381
ApeKI	GCWGC	5 cut(s)	23, 97, 100, 203, 407
ApoI	RAATTY	2 cut(s)	71, 341
AspS9I	GGNCC	2 cut(s)	85, 214
AsuHPI	GGTGA	2 cut(s)	302, 325
AvaII	GGWCC	2 cut(s)	85, 214
BbsI	GAAGAC	1 cut(s)	454
Bbv12I	GWGCWC	1 cut(s)	433
BbvI	GCAGC	5 cut(s)	35, 84, 87, 190, 394
BccI	CCATC	1 cut(s)	38
BciT130I	CCWGG	1 cut(s)	147
BisI	GCNGC	5 cut(s)	24, 98, 101, 204, 408
BlsI	GCNGC	5 cut(s)	25, 99, 102, 205, 409
Bme1390I	CCNGG	1 cut(s)	147
Bme18I	GGWCC	2 cut(s)	85, 214
BmgT120I	GGNCC	2 cut(s)	85, 214
BmiI	GGNNCC	2 cut(s)	215, 216
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	2 cut(s)	172, 507
BpiI	GAAGAC	1 cut(s)	454
BsaBI	GATNNNNATC	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	146
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
Bse1I	ACTGG	1 cut(s)	364
Bse3DI	GCAATG	1 cut(s)	247
Bse8I	GATNNNNATC	1 cut(s)	296
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	146
BseGI	GGATG	1 cut(s)	498
BseJI	GATNNNNATC	1 cut(s)	296
BseMI	GCAATG	1 cut(s)	247
BseMII	CTCAG	2 cut(s)	369, 402
BseNI	ACTGG	1 cut(s)	364
BseRI	GAGGAG	1 cut(s)	8
BseXI	GCAGC	5 cut(s)	35, 84, 87, 190, 394
BshFI	GGCC	1 cut(s)	383
BsiHKAI	GWGCWC	1 cut(s)	433
BsiSI	CCGG	1 cut(s)	263
BslFI	GGGAC	2 cut(s)	227, 500
BsmFI	GGGAC	2 cut(s)	227, 500
BsnI	GGCC	1 cut(s)	383
Bsp1286I	GDGCHC	1 cut(s)	433
Bsp143I	GATC	2 cut(s)	220, 291
BspANI	GGCC	1 cut(s)	383
BspCNI	CTCAG	2 cut(s)	370, 403
BspLI	GGNNCC	2 cut(s)	215, 216
BspPI	GGATC	1 cut(s)	299
BsrDI	GCAATG	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	364
BssECI	CCNNGG	1 cut(s)	146
BssMI	GATC	2 cut(s)	220, 291
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	94
BstDEI	CTNAG	2 cut(s)	378, 411
BstF5I	GGATG	1 cut(s)	498
BstKTI	GATC	2 cut(s)	223, 294
BstMBI	GATC	2 cut(s)	220, 291
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstNI	CCWGG	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	145
BstV1I	GCAGC	5 cut(s)	35, 84, 87, 190, 394
BstV2I	GAAGAC	1 cut(s)	454
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	383
BtgZI	GCGATG	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	498
Cfr13I	GGNCC	2 cut(s)	85, 214
CseI	GACGC	1 cut(s)	293
CviAII	CATG	2 cut(s)	130, 188
CviJI	RGCY	6 cut(s)	26, 57, 203, 277, 383, 407
CviKI_1	RGCY	6 cut(s)	26, 57, 203, 277, 383, 407
DdeI	CTNAG	2 cut(s)	378, 411
DpnI	GATC	2 cut(s)	222, 293
DpnII	GATC	2 cut(s)	220, 291
Eco47I	GGWCC	2 cut(s)	85, 214
Eco57I	CTGAAG	2 cut(s)	198, 263
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	145
FaeI	CATG	2 cut(s)	133, 191
FaiI	YATR	5 cut(s)	131, 136, 189, 402, 444
FaqI	GGGAC	2 cut(s)	227, 500
FatI	CATG	2 cut(s)	129, 187
Fnu4HI	GCNGC	5 cut(s)	24, 98, 101, 204, 408
FokI	GGATG	1 cut(s)	485
Fsp4HI	GCNGC	5 cut(s)	24, 98, 101, 204, 408
GluI	GCNGC	5 cut(s)	24, 98, 101, 204, 408
HaeIII	GGCC	1 cut(s)	383
HapII	CCGG	1 cut(s)	263
HgaI	GACGC	1 cut(s)	293
Hin1II	CATG	2 cut(s)	133, 191
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	2 cut(s)	302, 325
Hpy188I	TCNGA	4 cut(s)	178, 340, 379, 450
Hpy188III	TCNNGA	2 cut(s)	80, 281
HpyAV	CCTTC	1 cut(s)	311
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4V	TGCA	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	2 cut(s)	378, 411
Hsp92II	CATG	2 cut(s)	133, 191
KflI	GGGWCCC	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	220, 291
LmnI	GCTCC	1 cut(s)	21
Lsp1109I	GCAGC	5 cut(s)	35, 84, 87, 190, 394
LweI	GCATC	2 cut(s)	172, 507
MalI	GATC	2 cut(s)	222, 293
MboI	GATC	2 cut(s)	220, 291
MboII	GAAGA	3 cut(s)	191, 427, 454
MflI	RGATCY	1 cut(s)	291
MhlI	GDGCHC	1 cut(s)	433
MluCI	AATT	3 cut(s)	71, 341, 363
MmeI	TCCRAC	1 cut(s)	498
MnlI	CCTC	5 cut(s)	29, 76, 346, 373, 488
MseI	TTAA	1 cut(s)	366
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	1 cut(s)	54
NdeII	GATC	2 cut(s)	220, 291
NlaIII	CATG	2 cut(s)	133, 191
NlaIV	GGNNCC	2 cut(s)	215, 216
PfeI	GAWTC	1 cut(s)	254
PkrI	GCNGC	5 cut(s)	25, 99, 102, 205, 409
PpuMI	RGGWCCY	1 cut(s)	214
PsiI	TTATAA	1 cut(s)	402
Psp5II	RGGWCCY	1 cut(s)	214
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	215, 216
PspPI	GGNCC	2 cut(s)	85, 214
PspPPI	RGGWCCY	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	5 cut(s)	24, 98, 101, 204, 408
Sau3AI	GATC	2 cut(s)	220, 291
Sau96I	GGNCC	2 cut(s)	85, 214
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	433
SetI	ASST	7 cut(s)	28, 87, 205, 279, 322, 338, 409
SfaNI	GCATC	2 cut(s)	172, 507
SinI	GGWCC	2 cut(s)	85, 214
Sse9I	AATT	3 cut(s)	71, 341, 363
StyD4I	CCNGG	1 cut(s)	145
TaaI	ACNGT	1 cut(s)	94
TaqI	TCGA	1 cut(s)	390
TasI	AATT	3 cut(s)	71, 341, 363
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TseI	GCWGC	5 cut(s)	23, 97, 100, 203, 407
TspDTI	ATGAA	2 cut(s)	162, 454
TspGWI	ACGGA	1 cut(s)	491
VpaK11BI	GGWCC	2 cut(s)	85, 214
XapI	RAATTY	2 cut(s)	71, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.