Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Forward (+)

50217297 .. 50221399

Gene Structure 4103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG303500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGAGCAACAAGCGCAACCAGCTTGACCAAAACCCAAGGAAATTCTATCTTGCTGGTAACCCACAAGATGAGTTCAACCAACAAGGCCAAAGCCAATGGGGACAACAAGGACAACAAGGCTGTGGACAACAAGGAAGGACCAGGCGCCAACAGCAGGGAAACAACAACAACAACATCTTTGCCGGCTTCGACACACAGCTCCTCGCCGACGCTCTCAACATCGACCAACAGACAGCCCAGCGGCTCCAGGGACAGAACGACAACAGGCCACAGATTGTTAGGGTTAAGGGACGTTTCGACTTTGTCGAGCCACCACGATCACAGAGGGAGGAAAGACAAATGCAAGGACAACAAATGCAGGGACAACAAGGACAGTATGAACAGAATGGCATGGAGGAGCTCTTCTGTCACATGAAGATGAAACAGAACATTGGCAAACCTAAAATGGCCGACGTCTACAGCCCGCAAGCCGGTCACATCAGCACCCTCAACAGCTTCAGCATGCCTATTCTCAGGCGCCTCCGCCTCAGTGCCGAGAGAGGCTTCTTCTACAACAACGCTATCTACAACCCACACTGGAACTTGAACGCCTATGAAGTCTACTACGTCATCAGGGGCAGCGCTAGGGTTCAGGTGGTGAACGACAATGGCGAGACCATCTTGGACGACCAGGTCCGCCAGGGACAGCTCTTCATCGTGCCACAGAACCACGCTGTATTGCAAAAGGCCATGAGCAACGGATACGAGTACATTGCCTTCAAGACCGATGACAATGCCATGATGAACACCATGGCTGGCAGGACCTCCGTCCTGCGGGCACTCCCCGACGTGGTCCTCGCCAACGCCTATCAGATGGACCGTGACCAGGCAAGGAACCTCAAGTACAACAGGCAGGAGACCGTTGCTTTGAGCTCCTCAAGGTCTTCCCGGTCCCAGAGGAACTGGCCCAAGAAGAAAACAACAAAGTGCCCCCCACAAAATGCAAATTCAAAGAAACGAAAACGACAGCCACCAGTGAGAACCAAGGCAATTGGAAACGATTCAACGAAGACGAAGACGGTAACTGATCACGTGTCAACCGACGGTTTCAGTAATCCGGCCACGTACTCAGGTGAACCACTGTCGATTCCGGTCACGTACTCCGACGATCAAGCAGTCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

387

Amino Acids

44.07

Weight (kDa)

9.75

Isoelectric Point (pI)

54.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	143 - 290	1.2e-36	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	671
AatII	GACGTC	1 cut(s)	456
AccB1I	GGYRCC	2 cut(s)	144, 516
AccI	GTMKAC	2 cut(s)	456, 600
AciI	CCGC	5 cut(s)	241, 464, 523, 676, 814
AcoI	YGGCCR	2 cut(s)	447, 1098
AcsI	RAATTY	2 cut(s)	41, 985
AcuI	CTGAAG	1 cut(s)	481
AcvI	CACGTG	1 cut(s)	1072
AcyI	GRCGYC	3 cut(s)	145, 453, 517
AfaI	GTAC	4 cut(s)	749, 884, 1106, 1139
AfeI	AGCGCT	1 cut(s)	622
AfiI	CCNNNNNNNGG	5 cut(s)	154, 470, 813, 829, 865
AflIII	ACRYGT	1 cut(s)	1071
AgsI	TTSAA	5 cut(s)	76, 586, 760, 990, 1044
AjiI	CACGTC	1 cut(s)	829
AjnI	CCWGG	5 cut(s)	140, 246, 669, 678, 864
AluBI	AGCT	6 cut(s)	22, 199, 400, 495, 688, 912
AluI	AGCT	6 cut(s)	22, 199, 400, 495, 688, 912
Alw21I	GWGCWC	2 cut(s)	402, 914
Alw26I	GTCTC	2 cut(s)	647, 890
Aor51HI	AGCGCT	1 cut(s)	622
AoxI	GGCC	6 cut(s)	85, 266, 447, 726, 944, 1098
ApeKI	GCWGC	1 cut(s)	618
ApoI	RAATTY	2 cut(s)	41, 985
ArsI	GACNNNNNNTTYG	2 cut(s)	889, 921
Asp700I	GAANNNNTTC	1 cut(s)	1039
AspLEI	GCGC	4 cut(s)	15, 147, 519, 623
AspS9I	GGNCC	7 cut(s)	138, 673, 801, 832, 856, 930, 945
AsuC2I	CCSGG	1 cut(s)	928
AsuHPI	GGTGA	2 cut(s)	649, 1124
AvaII	GGWCC	6 cut(s)	138, 673, 801, 832, 856, 930
BaeGI	GKGCMC	2 cut(s)	820, 971
BanI	GGYRCC	2 cut(s)	144, 516
BanII	GRGCYC	2 cut(s)	402, 914
BarI	GAAGNNNNNNTAC	2 cut(s)	740, 772
BbrPI	CACGTG	1 cut(s)	1072
BbsI	GAAGAC	3 cut(s)	915, 1055, 1061
Bbv12I	GWGCWC	2 cut(s)	402, 914
BbvI	GCAGC	1 cut(s)	630
BccI	CCATC	2 cut(s)	665, 847
BcgI	CGANNNNNNTGC	4 cut(s)	734, 755, 768, 789
BciT130I	CCWGG	5 cut(s)	142, 248, 671, 680, 866
BciVI	GTATCC	1 cut(s)	734
BclI	TGATCA	1 cut(s)	1066
BcnI	CCSGG	1 cut(s)	928
BcoDI	GTCTC	2 cut(s)	647, 890
BfaI	CTAG	1 cut(s)	624
BfmI	CTRYAG	1 cut(s)	457
BfoI	RGCGCY	3 cut(s)	148, 520, 624
BfuI	GTATCC	1 cut(s)	734
BisI	GCNGC	2 cut(s)	242, 619
BlsI	GCNGC	2 cut(s)	243, 620
Bme1390I	CCNGG	6 cut(s)	142, 248, 671, 680, 866, 928
Bme18I	GGWCC	6 cut(s)	138, 673, 801, 832, 856, 930
BmgBI	CACGTC	1 cut(s)	829
BmgT120I	GGNCC	7 cut(s)	138, 673, 801, 832, 856, 930, 945
BmiI	GGNNCC	5 cut(s)	146, 245, 518, 875, 932
BmrFI	CCNGG	6 cut(s)	142, 248, 671, 680, 866, 928
BoxI	GACNNNNGTC	1 cut(s)	806
BpiI	GAAGAC	3 cut(s)	915, 1055, 1061
BpmI	CTGGAG	1 cut(s)	230
BpuEI	CTTGAG	2 cut(s)	863, 901
BpuMI	CCSGG	1 cut(s)	928
BsaAI	YACGTR	3 cut(s)	1072, 1104, 1137
BsaHI	GRCGYC	3 cut(s)	145, 453, 517
BsaI	GGTCTC	2 cut(s)	647, 890
BsaJI	CCNNGG	5 cut(s)	35, 247, 679, 789, 1023
BsaWI	WCCGGW	1 cut(s)	1129
Bsc4I	CCNNNNNNNGG	5 cut(s)	154, 470, 813, 829, 865
Bse118I	RCCGGY	2 cut(s)	182, 470
Bse1I	ACTGG	3 cut(s)	581, 947, 1013
Bse3DI	GCAATG	1 cut(s)	750
BseBI	CCWGG	5 cut(s)	142, 248, 671, 680, 866
BseDI	CCNNGG	5 cut(s)	35, 247, 679, 789, 1023
BseLI	CCNNNNNNNGG	5 cut(s)	154, 470, 813, 829, 865
BseMI	GCAATG	1 cut(s)	750
BseMII	CTCAG	3 cut(s)	526, 541, 1122
BseNI	ACTGG	3 cut(s)	581, 947, 1013
BseRI	GAGGAG	3 cut(s)	191, 410, 904
BseSI	GKGCMC	2 cut(s)	820, 971
BseXI	GCAGC	1 cut(s)	630
BseYI	CCCAGC	1 cut(s)	237
BshFI	GGCC	6 cut(s)	87, 268, 449, 728, 946, 1100
BshNI	GGYRCC	2 cut(s)	144, 516
BsiHKAI	GWGCWC	2 cut(s)	402, 914
BsiSI	CCGG	5 cut(s)	183, 471, 928, 1097, 1130
BslFI	GGGAC	6 cut(s)	114, 264, 303, 375, 696, 916
BslI	CCNNNNNNNGG	5 cut(s)	154, 470, 813, 829, 865
BsmAI	GTCTC	2 cut(s)	647, 890
BsmFI	GGGAC	6 cut(s)	114, 264, 303, 375, 696, 916
BsnI	GGCC	6 cut(s)	87, 268, 449, 728, 946, 1100
Bso31I	GGTCTC	2 cut(s)	647, 890
Bsp1286I	GDGCHC	4 cut(s)	402, 820, 914, 971
Bsp143I	GATC	3 cut(s)	317, 1066, 1147
Bsp19I	CCATGG	1 cut(s)	789
BspACI	CCGC	5 cut(s)	241, 464, 523, 676, 814
BspANI	GGCC	6 cut(s)	87, 268, 449, 728, 946, 1100
BspCNI	CTCAG	3 cut(s)	525, 540, 1121
BspLI	GGNNCC	5 cut(s)	146, 245, 518, 875, 932
BspQI	GCTCTTC	2 cut(s)	407, 695
BspT107I	GGYRCC	2 cut(s)	144, 516
BspTNI	GGTCTC	2 cut(s)	647, 890
BsrDI	GCAATG	1 cut(s)	750
BsrFI	RCCGGY	2 cut(s)	182, 470
BsrI	ACTGG	3 cut(s)	581, 947, 1013
BssAI	RCCGGY	2 cut(s)	182, 470
BssECI	CCNNGG	5 cut(s)	35, 247, 679, 789, 1023
BssMI	GATC	3 cut(s)	317, 1066, 1147
BssNI	GRCGYC	3 cut(s)	145, 453, 517
BssT1I	CCWWGG	3 cut(s)	35, 789, 1023
Bst2UI	CCWGG	5 cut(s)	142, 248, 671, 680, 866
Bst4CI	ACNGT	6 cut(s)	375, 860, 901, 1060, 1085, 1122
Bst6I	CTCTTC	2 cut(s)	407, 695
BstACI	GRCGYC	3 cut(s)	145, 453, 517
BstBAI	YACGTR	3 cut(s)	1072, 1104, 1137
BstC8I	GCNNGC	6 cut(s)	184, 464, 468, 503, 796, 816
BstDEI	CTNAG	3 cut(s)	512, 527, 1108
BstDSI	CCRYGG	1 cut(s)	789
BstEII	GGTNACC	1 cut(s)	56
BstH2I	RGCGCY	3 cut(s)	148, 520, 624
BstHHI	GCGC	4 cut(s)	15, 147, 519, 623
BstKTI	GATC	3 cut(s)	320, 1069, 1150
BstMAI	GTCTC	2 cut(s)	647, 890
BstMBI	GATC	3 cut(s)	317, 1066, 1147
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 19, 151
BstNI	CCWGG	5 cut(s)	142, 248, 671, 680, 866
BstNSI	RCATGY	1 cut(s)	505
BstPAI	GACNNNNGTC	1 cut(s)	806
BstPI	GGTNACC	1 cut(s)	56
BstSCI	CCNGG	6 cut(s)	140, 246, 669, 678, 864, 926
BstSFI	CTRYAG	1 cut(s)	457
BstSLI	GKGCMC	2 cut(s)	820, 971
BstV1I	GCAGC	1 cut(s)	630
BstV2I	GAAGAC	3 cut(s)	915, 1055, 1061
BsuI	GTATCC	1 cut(s)	734
BsuRI	GGCC	6 cut(s)	87, 268, 449, 728, 946, 1100
BtgI	CCRYGG	1 cut(s)	789
BtrI	CACGTC	1 cut(s)	829
BtsIMutI	CAGTG	4 cut(s)	535, 574, 1020, 1118
Cac8I	GCNNGC	6 cut(s)	184, 464, 468, 503, 796, 816
CfoI	GCGC	4 cut(s)	15, 147, 519, 623
Cfr10I	RCCGGY	2 cut(s)	182, 470
Cfr13I	GGNCC	7 cut(s)	138, 673, 801, 832, 856, 930, 945
CseI	GACGC	1 cut(s)	218
CsiI	ACCWGGT	1 cut(s)	669
Csp6I	GTAC	4 cut(s)	748, 883, 1105, 1138
CviAII	CATG	6 cut(s)	391, 412, 502, 730, 778, 790
CviQI	GTAC	4 cut(s)	748, 883, 1105, 1138
DdeI	CTNAG	3 cut(s)	512, 527, 1108
DinI	GGCGCC	2 cut(s)	146, 518
DpnI	GATC	3 cut(s)	319, 1068, 1149
DpnII	GATC	3 cut(s)	317, 1066, 1147
DrdI	GACNNNNNNGTC	1 cut(s)	671
DseDI	GACNNNNNNGTC	1 cut(s)	671
EaeI	YGGCCR	2 cut(s)	447, 1098
Eam1104I	CTCTTC	2 cut(s)	407, 695
EarI	CTCTTC	2 cut(s)	407, 695
EciI	GGCGGA	2 cut(s)	512, 665
Ecl136II	GAGCTC	2 cut(s)	400, 912
Eco130I	CCWWGG	3 cut(s)	35, 789, 1023
Eco24I	GRGCYC	2 cut(s)	402, 914
Eco31I	GGTCTC	2 cut(s)	647, 890
Eco47I	GGWCC	6 cut(s)	138, 673, 801, 832, 856, 930
Eco47III	AGCGCT	1 cut(s)	622
Eco53kI	GAGCTC	2 cut(s)	400, 912
Eco57I	CTGAAG	1 cut(s)	481
Eco72I	CACGTG	1 cut(s)	1072
Eco91I	GGTNACC	1 cut(s)	56
EcoICRI	GAGCTC	2 cut(s)	400, 912
EcoO109I	RGGNCCY	1 cut(s)	801
EcoO65I	GGTNACC	1 cut(s)	56
EcoRII	CCWGG	5 cut(s)	140, 246, 669, 678, 864
EcoT14I	CCWWGG	3 cut(s)	35, 789, 1023
EcoT38I	GRGCYC	2 cut(s)	402, 914
EgeI	GGCGCC	2 cut(s)	146, 518
EheI	GGCGCC	2 cut(s)	146, 518
ErhI	CCWWGG	3 cut(s)	35, 789, 1023
FaeI	CATG	6 cut(s)	394, 415, 505, 733, 781, 793
FaiI	YATR	8 cut(s)	378, 392, 413, 503, 594, 731, 779, 791
FaqI	GGGAC	6 cut(s)	114, 264, 303, 375, 696, 916
FatI	CATG	6 cut(s)	390, 411, 501, 729, 777, 789
FauI	CCCGC	2 cut(s)	471, 807
FbaI	TGATCA	1 cut(s)	1066
FblI	GTMKAC	2 cut(s)	456, 600
Fnu4HI	GCNGC	2 cut(s)	242, 619
FriOI	GRGCYC	2 cut(s)	402, 914
Fsp4HI	GCNGC	2 cut(s)	242, 619
FspBI	CTAG	1 cut(s)	624
GlaI	GCGC	4 cut(s)	14, 146, 518, 622
GluI	GCNGC	2 cut(s)	242, 619
GsaI	CCCAGC	1 cut(s)	241
GsuI	CTGGAG	1 cut(s)	230
HaeII	RGCGCY	3 cut(s)	148, 520, 624
HaeIII	GGCC	6 cut(s)	87, 268, 449, 728, 946, 1100
HapII	CCGG	5 cut(s)	183, 471, 928, 1097, 1130
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	4 cut(s)	15, 147, 519, 623
Hin1I	GRCGYC	3 cut(s)	145, 453, 517
Hin1II	CATG	6 cut(s)	394, 415, 505, 733, 781, 793
Hin6I	GCGC	4 cut(s)	13, 145, 517, 621
HinP1I	GCGC	4 cut(s)	13, 145, 517, 621
HincII	GTYRAC	1 cut(s)	1077
HindII	GTYRAC	1 cut(s)	1077
HinfI	GANTC	2 cut(s)	1040, 1126
HpaII	CCGG	5 cut(s)	183, 471, 928, 1097, 1130
HphI	GGTGA	2 cut(s)	649, 1124
Hpy166II	GTNNAC	6 cut(s)	125, 457, 601, 640, 1077, 1115
Hpy188I	TCNGA	2 cut(s)	852, 1144
Hpy188III	TCNNGA	1 cut(s)	760
Hpy8I	GTNNAC	6 cut(s)	125, 457, 601, 640, 1077, 1115
Hpy99I	CGWCG	5 cut(s)	212, 455, 830, 1085, 1148
HpyAV	CCTTC	2 cut(s)	129, 766
HpyCH4III	ACNGT	6 cut(s)	375, 860, 901, 1060, 1085, 1122
HpyCH4IV	ACGT	7 cut(s)	292, 453, 606, 828, 1071, 1103, 1136
HpyCH4V	TGCA	4 cut(s)	343, 358, 721, 983
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 19, 151
HpyF3I	CTNAG	3 cut(s)	512, 527, 1108
HpySE526I	ACGT	7 cut(s)	292, 453, 606, 828, 1071, 1103, 1136
Hsp92I	GRCGYC	3 cut(s)	145, 453, 517
Hsp92II	CATG	6 cut(s)	394, 415, 505, 733, 781, 793
HspAI	GCGC	4 cut(s)	13, 145, 517, 621
KasI	GGCGCC	2 cut(s)	144, 516
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	1066
Kzo9I	GATC	3 cut(s)	317, 1066, 1147
LguI	GCTCTTC	2 cut(s)	407, 695
LmnI	GCTCC	4 cut(s)	204, 249, 397, 917
Lsp1109I	GCAGC	1 cut(s)	630
MabI	ACCWGGT	1 cut(s)	669
MaeI	CTAG	1 cut(s)	624
MaeII	ACGT	7 cut(s)	292, 453, 606, 828, 1071, 1103, 1136
MaeIII	GTNAC	6 cut(s)	56, 407, 473, 860, 1060, 1132
MalI	GATC	3 cut(s)	319, 1068, 1149
MboI	GATC	3 cut(s)	317, 1066, 1147
MboII	GAAGA	8 cut(s)	394, 427, 538, 682, 915, 964, 1060, 1066
MfeI	CAATTG	1 cut(s)	1029
MhlI	GDGCHC	4 cut(s)	402, 820, 914, 971
MluCI	AATT	3 cut(s)	41, 985, 1029
Mly113I	GGCGCC	2 cut(s)	145, 517
MroNI	GCCGGC	1 cut(s)	182
MroXI	GAANNNNTTC	1 cut(s)	1039
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	1 cut(s)	416
MspA1I	CMGCKG	1 cut(s)	241
MspI	CCGG	5 cut(s)	183, 471, 928, 1097, 1130
MspR9I	CCNGG	6 cut(s)	142, 248, 671, 680, 866, 928
MunI	CAATTG	1 cut(s)	1029
MvaI	CCWGG	5 cut(s)	142, 248, 671, 680, 866
MwoI	GCNNNNNNNGC	3 cut(s)	12, 19, 151
NaeI	GCCGGC	1 cut(s)	184
NarI	GGCGCC	2 cut(s)	145, 517
NciI	CCSGG	1 cut(s)	928
NcoI	CCATGG	1 cut(s)	789
NdeII	GATC	3 cut(s)	317, 1066, 1147
NgoMIV	GCCGGC	1 cut(s)	182
NlaIII	CATG	6 cut(s)	394, 415, 505, 733, 781, 793
NlaIV	GGNNCC	5 cut(s)	146, 245, 518, 875, 932
NmeAIII	GCCGAG	1 cut(s)	559
NmuCI	GTSAC	4 cut(s)	407, 473, 860, 1132
NspI	RCATGY	1 cut(s)	505
PaeI	GCATGC	1 cut(s)	505
PciSI	GCTCTTC	2 cut(s)	407, 695
PcsI	WCGNNNNNNNCGW	3 cut(s)	303, 648, 1077
PdiI	GCCGGC	1 cut(s)	184
PdmI	GAANNNNTTC	1 cut(s)	1039
PfeI	GAWTC	2 cut(s)	1040, 1126
PflFI	GACNNNGTC	3 cut(s)	302, 671, 830
PkrI	GCNGC	2 cut(s)	243, 620
PluTI	GGCGCC	2 cut(s)	148, 520
PmaCI	CACGTG	1 cut(s)	1072
PmlI	CACGTG	1 cut(s)	1072
Ppu21I	YACGTR	3 cut(s)	1072, 1104, 1137
PpuMI	RGGWCCY	1 cut(s)	801
PshAI	GACNNNNGTC	1 cut(s)	806
Psp124BI	GAGCTC	2 cut(s)	402, 914
Psp5II	RGGWCCY	1 cut(s)	801
Psp6I	CCWGG	5 cut(s)	140, 246, 669, 678, 864
PspCI	CACGTG	1 cut(s)	1072
PspEI	GGTNACC	1 cut(s)	56
PspFI	CCCAGC	1 cut(s)	237
PspGI	CCWGG	5 cut(s)	140, 246, 669, 678, 864
PspN4I	GGNNCC	5 cut(s)	146, 245, 518, 875, 932
PspPI	GGNCC	7 cut(s)	138, 673, 801, 832, 856, 930, 945
PspPPI	RGGWCCY	1 cut(s)	801
PsrI	GAACNNNNNNTAC	2 cut(s)	866, 898
PsyI	GACNNNGTC	3 cut(s)	302, 671, 830
RsaI	GTAC	4 cut(s)	749, 884, 1106, 1139
RsaNI	GTAC	4 cut(s)	748, 883, 1105, 1138
RseI	CAYNNNNRTG	1 cut(s)	416
SacI	GAGCTC	2 cut(s)	402, 914
SapI	GCTCTTC	2 cut(s)	407, 695
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	2 cut(s)	242, 619
Sau3AI	GATC	3 cut(s)	317, 1066, 1147
Sau96I	GGNCC	7 cut(s)	138, 673, 801, 832, 856, 930, 945
ScrFI	CCNGG	6 cut(s)	142, 248, 671, 680, 866, 928
SduI	GDGCHC	4 cut(s)	402, 820, 914, 971
SexAI	ACCWGGT	1 cut(s)	669
SfcI	CTRYAG	1 cut(s)	457
SfoI	GGCGCC	2 cut(s)	146, 518
SinI	GGWCC	6 cut(s)	138, 673, 801, 832, 856, 930
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	2 cut(s)	878, 916
SmoI	CTYRAG	2 cut(s)	878, 916
SphI	GCATGC	1 cut(s)	505
Sse9I	AATT	3 cut(s)	41, 985, 1029
SsiI	CCGC	5 cut(s)	241, 464, 523, 676, 814
SspDI	GGCGCC	2 cut(s)	144, 516
SspMI	CTAG	1 cut(s)	624
SstI	GAGCTC	2 cut(s)	402, 914
StyD4I	CCNGG	6 cut(s)	140, 246, 669, 678, 864, 926
StyI	CCWWGG	3 cut(s)	35, 789, 1023
TaaI	ACNGT	6 cut(s)	375, 860, 901, 1060, 1085, 1122
TaiI	ACGT	7 cut(s)	295, 456, 609, 831, 1074, 1106, 1139
TaqI	TCGA	5 cut(s)	189, 222, 297, 306, 1124
TaqII	GACCGA	1 cut(s)	779
TasI	AATT	3 cut(s)	41, 985, 1029
TatI	WGTACW	2 cut(s)	747, 882
TauI	GCSGC	1 cut(s)	244
TfiI	GAWTC	2 cut(s)	1040, 1126
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	4 cut(s)	535, 581, 1020, 1125
TseFI	GTSAC	4 cut(s)	407, 473, 860, 1132
TseI	GCWGC	1 cut(s)	618
Tsp45I	GTSAC	4 cut(s)	407, 473, 860, 1132
TspDTI	ATGAA	6 cut(s)	393, 428, 434, 609, 682, 797
TspGWI	ACGGA	2 cut(s)	753, 796
TspRI	CASTG	4 cut(s)	535, 581, 1020, 1125
Tth111I	GACNNNGTC	3 cut(s)	302, 671, 830
VpaK11BI	GGWCC	6 cut(s)	138, 673, 801, 832, 856, 930
XapI	RAATTY	2 cut(s)	41, 985
XceI	RCATGY	1 cut(s)	505
XmiI	GTMKAC	2 cut(s)	456, 600
XmnI	GAANNNNTTC	1 cut(s)	1039
XspI	CTAG	1 cut(s)	624
ZraI	GACGTC	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.