Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Reverse (-)

19921102 .. 19924810

Gene Structure 3709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00180560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1734 bp

ATGGAAGACGTGGTCGCCGAATCGATTTATCCGGCCTCATACTCCGACGAGAAGGCAATGCAACGTCGTCAGCTTCGAGACTCGCTTCACGAGGATGTTGCAAATAGCTGCTTAGCAGCTCGCCAACAATCTCAGTCGAGCCAGCAGAATGAGTGCCAACTAGATCAGCTCCAAGCCCGCGAACCTGATAACCGCATTGAGACTGAAGCGGGTAGGATTGAGTCCTGGGACTACAACCAGGACGACTTCCAGTGTGCTGGTGTTGCCGTTCAACGAATTACCATTGAAAGAAATGGCCTTCACTTGCCTTCTTACACCCACGCTCCACAACTCACTTATGTCGTCCAAGGCAATGGTTTTCTATCAACTGTTTTCCCTGGCTGTCCTGAAACTTTCGAAGAATCTGAGCAATCTGATGAAGAACAACAAGGCCAGCAAGGGCGCCGTGGACAGCAAGGTCGTGGACAACAAGAGCAGCAAGAACAAGAAGAGTATGAGCAACAACAAGGCCGTGGACAGCAAGGTCGTCATAGACAACAAGGGCAGCAAGGCCAACAGGGCCAAGAGAGCTTCGAACAGCTAGACAGACACCAGAAGGTTCGACGCATCAGAGAAGGTGATGTGATTGCTATTCCTGCTGGAGTCACTTACTGGTCCTACAACGACGGTGACCAACCTCTTGTTGCTGTCAATCTTCTTGATATCGGCAACCAACAAAACCAGCTTGACCGTAACCCCAGGAGGTTCTATCTTGCTGGTAACCCACAAGATGAGTTTAACCAACAAGGGCAAAGCCAGAGTCGACGGGGCCAGCAAGGTCGTGGACAACAAGGGCAAGGCCAAAGTCAATGGGACCAGGACCAGCAACAGCAACAGCAACAGCAACAGCATGGTGGAAGGAGCAGGCACCAGCAACAACAACAAGGAAACAACAACAACAACATCTTTGCCGGCTTCAACACACAGCTTCTCGCTGACGCTCTGAACATCGACCAACAGACTGCCCAGCAGCTTCAGGGACAAAACGACAACAGACCCCAAATTGTGAGAGTTAGAGGACGTCTTGATTTCATCGAACCACCACGATCACAGCAGGAGGAAAGACAACAACAGGGAATACAGAGACAACAGGGACAACAAGGACAGAATGGTTTTGAGGAGACATTCTGTAACTTCAGGATCAGAGAGAATATTGGCAGGCCTTCACGCGCCGACGTCTTCAGTCCCCAAGCTGGTCGCATCAGCACCCTCAACAGCTTTAAGTTGCCTATTCTCAGGTACCTTGACCTCAGCGCTGAGAGAGGCTTCTTCTACAATAATGCTATCTACAGTCCTCACTGGAACTTGAACGCCCATGAAGTCTACTACGTCATTAGAGGTAGTGCTAGGGTTCAGGTTGTGAATGACAATGGCCAGGCCATCTTGGACAATGAGGTCCGCCAGGGACAGCTCTTCATAGTGCCACAGAACCATGCAGTGTTGCAGAAGGCTAGCAACAATGGATACGAGTACATTGCTTTCAAGACCCAAGACAATGCTAAGATTAACACTCTTGCCGGCCGGACGTCAGTCTTGCGGGCACTCCCCGACGTGGTCCTCGCTAACGCGTACCAGATTGATCGACAACAGGCAAGGACTCTCAAGTACAACAGGCAGGAGACTGTTGCTTTGAGCTCATCAAGGTCTTCTCGATCCCAGAGGAACTGGTGGGATATTGCTGAAATGTTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

577

Amino Acids

66.21

Weight (kDa)

5.71

Isoelectric Point (pI)

67.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	58 - 255	1.5e-24	Cupin
Cupin_1	PF00190	397 - 544	3.1e-40	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	456, 522, 1433
AatII	GACGTC	3 cut(s)	1063, 1218, 1568
Acc65I	GGTACC	1 cut(s)	1278
AccB1I	GGYRCC	3 cut(s)	441, 906, 1278
AccI	GTMKAC	2 cut(s)	802, 1362
AccII	CGCG	3 cut(s)	180, 1209, 1607
AciI	CCGC	5 cut(s)	178, 193, 209, 1438, 1576
AclWI	GGATC	2 cut(s)	1187, 1686
AcoI	YGGCCR	2 cut(s)	1411, 1558
AcuI	CTGAAG	4 cut(s)	225, 998, 1159, 1204
AcyI	GRCGYC	4 cut(s)	442, 1060, 1215, 1565
AfaI	GTAC	4 cut(s)	1280, 1511, 1610, 1646
AfeI	AGCGCT	1 cut(s)	1294
AfiI	CCNNNNNNNGG	2 cut(s)	1232, 1591
AflIII	ACRYGT	1 cut(s)	1605
AgsI	TTSAA	5 cut(s)	272, 287, 958, 1348, 1522
AjiI	CACGTC	2 cut(s)	10, 1591
AjnI	CCWGG	7 cut(s)	224, 237, 376, 737, 855, 1413, 1440
Alw21I	GWGCWC	1 cut(s)	1676
Alw26I	GTCTC	5 cut(s)	72, 194, 1117, 1154, 1652
AlwI	GGATC	2 cut(s)	1187, 1686
Aor51HI	AGCGCT	1 cut(s)	1294
ApeKI	GCWGC	5 cut(s)	108, 116, 475, 544, 1009
ArsI	GACNNNNNNTTYG	4 cut(s)	784, 816, 1651, 1683
Asp718I	GGTACC	1 cut(s)	1278
AspLEI	GCGC	3 cut(s)	444, 1211, 1295
AspS9I	GGNCC	7 cut(s)	559, 654, 808, 853, 859, 1435, 1594
AsuHPI	GGTGA	2 cut(s)	629, 680
AsuII	TTCGAA	2 cut(s)	396, 573
AsuNHI	GCTAGC	1 cut(s)	1490
AvaII	GGWCC	5 cut(s)	654, 853, 859, 1435, 1594
BaeGI	GKGCMC	1 cut(s)	1582
BalI	TGGCCA	1 cut(s)	1413
BanI	GGYRCC	3 cut(s)	441, 906, 1278
BanII	GRGCYC	1 cut(s)	1676
BauI	CACGAG	1 cut(s)	89
BbsI	GAAGAC	3 cut(s)	12, 1210, 1677
Bbv12I	GWGCWC	1 cut(s)	1676
BbvCI	CCTCAGC	1 cut(s)	1289
BbvI	GCAGC	5 cut(s)	95, 128, 487, 556, 1021
BccI	CCATC	1 cut(s)	1427
BceAI	ACGGC	3 cut(s)	251, 429, 495
BcgI	CGANNNNNNTGC	4 cut(s)	80, 114, 1496, 1530
BciT130I	CCWGG	7 cut(s)	226, 239, 378, 739, 857, 1415, 1442
BciVI	GTATCC	1 cut(s)	1496
BcoDI	GTCTC	5 cut(s)	72, 194, 1117, 1154, 1652
BfaI	CTAG	4 cut(s)	161, 581, 1386, 1491
BfmI	CTRYAG	1 cut(s)	1327
BfoI	RGCGCY	2 cut(s)	445, 1296
BfuI	GTATCC	1 cut(s)	1496
BglI	GCCNNNNNGGC	1 cut(s)	558
BisI	GCNGC	5 cut(s)	109, 117, 476, 545, 1010
BlpI	GCTNAGC	1 cut(s)	112
BlsI	GCNGC	5 cut(s)	110, 118, 477, 546, 1011
Bme1390I	CCNGG	7 cut(s)	226, 239, 378, 739, 857, 1415, 1442
Bme18I	GGWCC	5 cut(s)	654, 853, 859, 1435, 1594
BmgBI	CACGTC	2 cut(s)	10, 1591
BmgT120I	GGNCC	7 cut(s)	559, 654, 808, 853, 859, 1435, 1594
BmiI	GGNNCC	5 cut(s)	443, 809, 854, 908, 1280
BmrFI	CCNGG	7 cut(s)	226, 239, 378, 739, 857, 1415, 1442
BmsI	GCATC	2 cut(s)	615, 1248
BmtI	GCTAGC	1 cut(s)	1494
BoxI	GACNNNNGTC	1 cut(s)	1568
BpiI	GAAGAC	3 cut(s)	12, 1210, 1677
BpmI	CTGGAG	1 cut(s)	660
Bpu10I	CCTNAGC	1 cut(s)	1289
Bpu1102I	GCTNAGC	1 cut(s)	112
Bpu14I	TTCGAA	2 cut(s)	396, 573
BpuEI	CTTGAG	1 cut(s)	1625
Bsa29I	ATCGAT	1 cut(s)	23
BsaHI	GRCGYC	4 cut(s)	442, 1060, 1215, 1565
BsaJI	CCNNGG	7 cut(s)	225, 346, 376, 445, 511, 737, 1441
BsaXI	ACNNNNNCTCC	2 cut(s)	307, 337
Bsc4I	CCNNNNNNNGG	2 cut(s)	1232, 1591
Bse118I	RCCGGY	2 cut(s)	950, 1556
Bse1I	ACTGG	4 cut(s)	250, 656, 1343, 1709
Bse3DI	GCAATG	3 cut(s)	63, 358, 1512
BseBI	CCWGG	7 cut(s)	226, 239, 378, 739, 857, 1415, 1442
BseCI	ATCGAT	1 cut(s)	23
BseDI	CCNNGG	7 cut(s)	225, 346, 376, 445, 511, 737, 1441
BseGI	GGATG	1 cut(s)	100
BseLI	CCNNNNNNNGG	2 cut(s)	1232, 1591
BseMI	GCAATG	3 cut(s)	63, 358, 1512
BseMII	CTCAG	5 cut(s)	146, 396, 1287, 1288, 1303
BseNI	ACTGG	4 cut(s)	250, 656, 1343, 1709
BseRI	GAGGAG	1 cut(s)	1172
BseSI	GKGCMC	1 cut(s)	1582
BseX3I	CGGCCG	1 cut(s)	1558
BseXI	GCAGC	5 cut(s)	95, 128, 487, 556, 1021
BseYI	CCCAGC	1 cut(s)	1005
Bsh1236I	CGCG	3 cut(s)	180, 1209, 1607
Bsh1285I	CGRYCG	1 cut(s)	1561
BshNI	GGYRCC	3 cut(s)	441, 906, 1278
BshVI	ATCGAT	1 cut(s)	23
BsiEI	CGRYCG	1 cut(s)	1561
BsiHKAI	GWGCWC	1 cut(s)	1676
BsiSI	CCGG	4 cut(s)	32, 951, 1557, 1561
BslFI	GGGAC	6 cut(s)	242, 866, 1032, 1146, 1209, 1458
BslI	CCNNNNNNNGG	2 cut(s)	1232, 1591
BsmAI	GTCTC	5 cut(s)	72, 194, 1117, 1154, 1652
BsmFI	GGGAC	6 cut(s)	242, 866, 1032, 1146, 1209, 1458
Bsp119I	TTCGAA	2 cut(s)	396, 573
Bsp1286I	GDGCHC	2 cut(s)	1582, 1676
Bsp143I	GATC	5 cut(s)	163, 1085, 1179, 1618, 1691
Bsp1720I	GCTNAGC	1 cut(s)	112
BspACI	CCGC	5 cut(s)	178, 193, 209, 1438, 1576
BspCNI	CTCAG	5 cut(s)	145, 397, 1287, 1288, 1302
BspDI	ATCGAT	1 cut(s)	23
BspFNI	CGCG	3 cut(s)	180, 1209, 1607
BspLI	GGNNCC	5 cut(s)	443, 809, 854, 908, 1280
BspOI	GCTAGC	1 cut(s)	1494
BspPI	GGATC	2 cut(s)	1187, 1686
BspQI	GCTCTTC	1 cut(s)	1457
BspT104I	TTCGAA	2 cut(s)	396, 573
BspT107I	GGYRCC	3 cut(s)	441, 906, 1278
BsrDI	GCAATG	3 cut(s)	63, 358, 1512
BsrFI	RCCGGY	2 cut(s)	950, 1556
BsrI	ACTGG	4 cut(s)	250, 656, 1343, 1709
BssAI	RCCGGY	2 cut(s)	950, 1556
BssECI	CCNNGG	7 cut(s)	225, 346, 376, 445, 511, 737, 1441
BssMI	GATC	5 cut(s)	163, 1085, 1179, 1618, 1691
BssNI	GRCGYC	4 cut(s)	442, 1060, 1215, 1565
BssSI	CACGAG	1 cut(s)	89
BssT1I	CCWWGG	1 cut(s)	346
Bst2BI	CACGAG	1 cut(s)	89
Bst2UI	CCWGG	7 cut(s)	226, 239, 378, 739, 857, 1415, 1442
Bst4CI	ACNGT	5 cut(s)	370, 668, 731, 1331, 1663
Bst6I	CTCTTC	2 cut(s)	483, 1457
BstACI	GRCGYC	4 cut(s)	442, 1060, 1215, 1565
BstBI	TTCGAA	2 cut(s)	396, 573
BstDEI	CTNAG	7 cut(s)	112, 132, 405, 1274, 1289, 1296, 1539
BstDSI	CCRYGG	2 cut(s)	445, 511
BstEII	GGTNACC	2 cut(s)	668, 758
BstF5I	GGATG	1 cut(s)	100
BstFNI	CGCG	3 cut(s)	180, 1209, 1607
BstH2I	RGCGCY	2 cut(s)	445, 1296
BstHHI	GCGC	3 cut(s)	444, 1211, 1295
BstKTI	GATC	5 cut(s)	166, 1088, 1182, 1621, 1694
BstMAI	GTCTC	5 cut(s)	72, 194, 1117, 1154, 1652
BstMBI	GATC	5 cut(s)	163, 1085, 1179, 1618, 1691
BstMCI	CGRYCG	1 cut(s)	1561
BstMWI	GCNNNNNNNGC	4 cut(s)	263, 558, 567, 635
BstNI	CCWGG	7 cut(s)	226, 239, 378, 739, 857, 1415, 1442
BstPAI	GACNNNNGTC	1 cut(s)	1568
BstPI	GGTNACC	2 cut(s)	668, 758
BstSCI	CCNGG	7 cut(s)	224, 237, 376, 737, 855, 1413, 1440
BstSFI	CTRYAG	1 cut(s)	1327
BstSLI	GKGCMC	1 cut(s)	1582
BstUI	CGCG	3 cut(s)	180, 1209, 1607
BstV1I	GCAGC	5 cut(s)	95, 128, 487, 556, 1021
BstV2I	GAAGAC	3 cut(s)	12, 1210, 1677
BstXI	CCANNNNNNTGG	2 cut(s)	257, 353
BstZI	CGGCCG	1 cut(s)	1558
Bsu15I	ATCGAT	1 cut(s)	23
BsuI	GTATCC	1 cut(s)	1496
BsuTUI	ATCGAT	1 cut(s)	23
BtgI	CCRYGG	2 cut(s)	445, 511
BtrI	CACGTC	2 cut(s)	10, 1591
BtsCI	GGATG	1 cut(s)	100
BtsI	GCAGTG	1 cut(s)	1482
BtsIMutI	CAGTG	3 cut(s)	257, 1336, 1482
CfoI	GCGC	3 cut(s)	444, 1211, 1295
Cfr10I	RCCGGY	2 cut(s)	950, 1556
Cfr13I	GGNCC	7 cut(s)	559, 654, 808, 853, 859, 1435, 1594
ClaI	ATCGAT	1 cut(s)	23
CseI	GACGC	2 cut(s)	612, 986
Csp6I	GTAC	4 cut(s)	1279, 1510, 1609, 1645
CviAII	CATG	3 cut(s)	890, 1355, 1472
CviQI	GTAC	4 cut(s)	1279, 1510, 1609, 1645
DdeI	CTNAG	7 cut(s)	112, 132, 405, 1274, 1289, 1296, 1539
DinI	GGCGCC	1 cut(s)	443
DpnI	GATC	5 cut(s)	165, 1087, 1181, 1620, 1693
DpnII	GATC	5 cut(s)	163, 1085, 1179, 1618, 1691
DrdI	GACNNNNNNGTC	3 cut(s)	456, 522, 1433
DseDI	GACNNNNNNGTC	3 cut(s)	456, 522, 1433
EaeI	YGGCCR	2 cut(s)	1411, 1558
EagI	CGGCCG	1 cut(s)	1558
Eam1104I	CTCTTC	2 cut(s)	483, 1457
EarI	CTCTTC	2 cut(s)	483, 1457
EciI	GGCGGA	1 cut(s)	1427
Ecl136II	GAGCTC	1 cut(s)	1674
EclXI	CGGCCG	1 cut(s)	1558
Eco130I	CCWWGG	1 cut(s)	346
Eco147I	AGGCCT	1 cut(s)	1201
Eco24I	GRGCYC	1 cut(s)	1676
Eco32I	GATATC	1 cut(s)	703
Eco47I	GGWCC	5 cut(s)	654, 853, 859, 1435, 1594
Eco47III	AGCGCT	1 cut(s)	1294
Eco52I	CGGCCG	1 cut(s)	1558
Eco53kI	GAGCTC	1 cut(s)	1674
Eco57I	CTGAAG	4 cut(s)	225, 998, 1159, 1204
Eco91I	GGTNACC	2 cut(s)	668, 758
EcoICRI	GAGCTC	1 cut(s)	1674
EcoO65I	GGTNACC	2 cut(s)	668, 758
EcoRII	CCWGG	7 cut(s)	224, 237, 376, 737, 855, 1413, 1440
EcoRV	GATATC	1 cut(s)	703
EcoT14I	CCWWGG	1 cut(s)	346
EcoT38I	GRGCYC	1 cut(s)	1676
EgeI	GGCGCC	1 cut(s)	443
EheI	GGCGCC	1 cut(s)	443
ErhI	CCWWGG	1 cut(s)	346
FaeI	CATG	3 cut(s)	893, 1358, 1475
FaiI	YATR	9 cut(s)	40, 339, 495, 531, 891, 1356, 1457, 1473, 1732
FaqI	GGGAC	6 cut(s)	242, 866, 1032, 1146, 1209, 1458
FatI	CATG	3 cut(s)	889, 1354, 1471
FauI	CCCGC	3 cut(s)	185, 202, 1569
FblI	GTMKAC	2 cut(s)	802, 1362
Fnu4HI	GCNGC	5 cut(s)	109, 117, 476, 545, 1010
FokI	GGATG	1 cut(s)	107
FriOI	GRGCYC	1 cut(s)	1676
Fsp4HI	GCNGC	5 cut(s)	109, 117, 476, 545, 1010
FspBI	CTAG	4 cut(s)	161, 581, 1386, 1491
GlaI	GCGC	3 cut(s)	443, 1210, 1294
GluI	GCNGC	5 cut(s)	109, 117, 476, 545, 1010
GsaI	CCCAGC	1 cut(s)	1009
GsuI	CTGGAG	1 cut(s)	660
HaeII	RGCGCY	2 cut(s)	445, 1296
HapII	CCGG	4 cut(s)	32, 951, 1557, 1561
HgaI	GACGC	2 cut(s)	612, 986
HhaI	GCGC	3 cut(s)	444, 1211, 1295
Hin1I	GRCGYC	4 cut(s)	442, 1060, 1215, 1565
Hin1II	CATG	3 cut(s)	893, 1358, 1475
Hin6I	GCGC	3 cut(s)	442, 1209, 1293
HinP1I	GCGC	3 cut(s)	442, 1209, 1293
HincII	GTYRAC	1 cut(s)	803
HindII	GTYRAC	1 cut(s)	803
HinfI	GANTC	7 cut(s)	20, 80, 221, 401, 642, 799, 1636
HpaII	CCGG	4 cut(s)	32, 951, 1557, 1561
HphI	GGTGA	2 cut(s)	629, 680
Hpy166II	GTNNAC	6 cut(s)	449, 464, 515, 803, 824, 1363
Hpy188I	TCNGA	6 cut(s)	46, 406, 415, 611, 984, 1184
Hpy188III	TCNNGA	8 cut(s)	77, 89, 386, 698, 1064, 1177, 1522, 1689
Hpy8I	GTNNAC	6 cut(s)	449, 464, 515, 803, 824, 1363
Hpy99I	CGWCG	7 cut(s)	50, 69, 606, 668, 807, 1217, 1592
HpyAV	CCTTC	8 cut(s)	46, 308, 318, 589, 608, 891, 1212, 1480
HpyCH4III	ACNGT	5 cut(s)	370, 668, 731, 1331, 1663
HpyCH4IV	ACGT	7 cut(s)	9, 64, 1060, 1215, 1368, 1565, 1590
HpyCH4V	TGCA	4 cut(s)	61, 101, 1475, 1483
HpyF10VI	GCNNNNNNNGC	4 cut(s)	263, 558, 567, 635
HpyF3I	CTNAG	7 cut(s)	112, 132, 405, 1274, 1289, 1296, 1539
HpySE526I	ACGT	7 cut(s)	9, 64, 1060, 1215, 1368, 1565, 1590
Hsp92I	GRCGYC	4 cut(s)	442, 1060, 1215, 1565
Hsp92II	CATG	3 cut(s)	893, 1358, 1475
HspAI	GCGC	3 cut(s)	442, 1209, 1293
KasI	GGCGCC	1 cut(s)	441
KpnI	GGTACC	1 cut(s)	1282
KroI	GCCGGC	2 cut(s)	950, 1556
KroNI	GCCGGC	2 cut(s)	952, 1558
Kzo9I	GATC	5 cut(s)	163, 1085, 1179, 1618, 1691
LguI	GCTCTTC	1 cut(s)	1457
LmnI	GCTCC	3 cut(s)	174, 328, 900
Lsp1109I	GCAGC	5 cut(s)	95, 128, 487, 556, 1021
LweI	GCATC	2 cut(s)	615, 1248
MaeI	CTAG	4 cut(s)	161, 581, 1386, 1491
MaeII	ACGT	7 cut(s)	9, 64, 1060, 1215, 1368, 1565, 1590
MaeIII	GTNAC	5 cut(s)	643, 668, 731, 758, 1169
MalI	GATC	5 cut(s)	165, 1087, 1181, 1620, 1693
MboI	GATC	5 cut(s)	163, 1085, 1179, 1618, 1691
MboII	GAAGA	9 cut(s)	17, 410, 431, 500, 686, 1210, 1300, 1444, 1677
MhlI	GDGCHC	2 cut(s)	1582, 1676
MlsI	TGGCCA	1 cut(s)	1413
MluCI	AATT	2 cut(s)	276, 1041
MluI	ACGCGT	1 cut(s)	1605
MluNI	TGGCCA	1 cut(s)	1413
Mly113I	GGCGCC	1 cut(s)	442
MlyI	GAGTC	5 cut(s)	74, 230, 651, 808, 1630
MmeI	TCCRAC	1 cut(s)	69
Mox20I	TGGCCA	1 cut(s)	1413
MroNI	GCCGGC	2 cut(s)	950, 1556
MscI	TGGCCA	1 cut(s)	1413
MseI	TTAA	3 cut(s)	777, 1260, 1545
MslI	CAYNNNNRTG	1 cut(s)	93
Msp20I	TGGCCA	1 cut(s)	1413
MspI	CCGG	4 cut(s)	32, 951, 1557, 1561
MspR9I	CCNGG	7 cut(s)	226, 239, 378, 739, 857, 1415, 1442
MvaI	CCWGG	7 cut(s)	226, 239, 378, 739, 857, 1415, 1442
MvnI	CGCG	3 cut(s)	180, 1209, 1607
MwoI	GCNNNNNNNGC	4 cut(s)	263, 558, 567, 635
NaeI	GCCGGC	2 cut(s)	952, 1558
NarI	GGCGCC	1 cut(s)	442
NdeII	GATC	5 cut(s)	163, 1085, 1179, 1618, 1691
NgoMIV	GCCGGC	2 cut(s)	950, 1556
NheI	GCTAGC	1 cut(s)	1490
NlaIII	CATG	3 cut(s)	893, 1358, 1475
NlaIV	GGNNCC	5 cut(s)	443, 809, 854, 908, 1280
NmuCI	GTSAC	2 cut(s)	643, 668
NspV	TTCGAA	2 cut(s)	396, 573
PceI	AGGCCT	1 cut(s)	1201
PciSI	GCTCTTC	1 cut(s)	1457
PcsI	WCGNNNNNNNCGW	2 cut(s)	15, 73
PdiI	GCCGGC	2 cut(s)	952, 1558
PfeI	GAWTC	2 cut(s)	20, 401
PflFI	GACNNNGTC	2 cut(s)	11, 1592
PkrI	GCNGC	5 cut(s)	110, 118, 477, 546, 1011
PleI	GAGTC	5 cut(s)	74, 229, 650, 807, 1630
PluTI	GGCGCC	1 cut(s)	445
PpsI	GAGTC	5 cut(s)	74, 229, 650, 807, 1630
PshAI	GACNNNNGTC	1 cut(s)	1568
Psp124BI	GAGCTC	1 cut(s)	1676
Psp6I	CCWGG	7 cut(s)	224, 237, 376, 737, 855, 1413, 1440
PspEI	GGTNACC	2 cut(s)	668, 758
PspFI	CCCAGC	1 cut(s)	1005
PspGI	CCWGG	7 cut(s)	224, 237, 376, 737, 855, 1413, 1440
PspN4I	GGNNCC	5 cut(s)	443, 809, 854, 908, 1280
PspPI	GGNCC	7 cut(s)	559, 654, 808, 853, 859, 1435, 1594
PsyI	GACNNNGTC	2 cut(s)	11, 1592
RsaI	GTAC	4 cut(s)	1280, 1511, 1610, 1646
RsaNI	GTAC	4 cut(s)	1279, 1510, 1609, 1645
RseI	CAYNNNNRTG	1 cut(s)	93
SacI	GAGCTC	1 cut(s)	1676
SalI	GTCGAC	1 cut(s)	801
SapI	GCTCTTC	1 cut(s)	1457
SaqAI	TTAA	3 cut(s)	777, 1260, 1545
SatI	GCNGC	5 cut(s)	109, 117, 476, 545, 1010
Sau3AI	GATC	5 cut(s)	163, 1085, 1179, 1618, 1691
Sau96I	GGNCC	7 cut(s)	559, 654, 808, 853, 859, 1435, 1594
SchI	GAGTC	5 cut(s)	74, 230, 651, 808, 1630
ScrFI	CCNGG	7 cut(s)	226, 239, 378, 739, 857, 1415, 1442
SduI	GDGCHC	2 cut(s)	1582, 1676
SfaNI	GCATC	2 cut(s)	615, 1248
SfcI	CTRYAG	1 cut(s)	1327
SfiI	GGCCNNNNNGGCC	1 cut(s)	558
SfoI	GGCGCC	1 cut(s)	443
SfuI	TTCGAA	2 cut(s)	396, 573
SinI	GGWCC	5 cut(s)	654, 853, 859, 1435, 1594
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	1640
SmoI	CTYRAG	1 cut(s)	1640
Sse9I	AATT	2 cut(s)	276, 1041
SseBI	AGGCCT	1 cut(s)	1201
SsiI	CCGC	5 cut(s)	178, 193, 209, 1438, 1576
SspDI	GGCGCC	1 cut(s)	441
SspI	AATATT	1 cut(s)	1192
SspMI	CTAG	4 cut(s)	161, 581, 1386, 1491
SstI	GAGCTC	1 cut(s)	1676
StuI	AGGCCT	1 cut(s)	1201
StyD4I	CCNGG	7 cut(s)	224, 237, 376, 737, 855, 1413, 1440
StyI	CCWWGG	1 cut(s)	346
TaaI	ACNGT	5 cut(s)	370, 668, 731, 1331, 1663
TaiI	ACGT	7 cut(s)	12, 67, 1063, 1218, 1371, 1568, 1593
TasI	AATT	2 cut(s)	276, 1041
TatI	WGTACW	2 cut(s)	1509, 1644
TfiI	GAWTC	2 cut(s)	20, 401
Tru1I	TTAA	3 cut(s)	777, 1260, 1545
Tru9I	TTAA	3 cut(s)	777, 1260, 1545
TscAI	CASTG	3 cut(s)	257, 1343, 1482
TseFI	GTSAC	2 cut(s)	643, 668
TseI	GCWGC	5 cut(s)	108, 116, 475, 544, 1009
Tsp45I	GTSAC	2 cut(s)	643, 668
TspDTI	ATGAA	4 cut(s)	432, 1060, 1371, 1444
TspRI	CASTG	3 cut(s)	257, 1343, 1482
Tth111I	GACNNNGTC	2 cut(s)	11, 1592
VpaK11BI	GGWCC	5 cut(s)	654, 853, 859, 1435, 1594
XcmI	CCANNNNNNNNNTGG	1 cut(s)	818
XmiI	GTMKAC	2 cut(s)	802, 1362
XspI	CTAG	4 cut(s)	161, 581, 1386, 1491
ZraI	GACGTC	3 cut(s)	1061, 1216, 1566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.