Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Forward (+)

53916291 .. 53916599

Gene Structure 309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG310000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCTAAGCCTATAGCTCTCGCCTTTTCTCTTTGCTTGCTTGTCCTCTTCCACAGCTGCTTAGCAGCTCGCCAACAATCTCAGTCAAGCCAGCAGAACGAGTGCCAGCTAGATCAGCTCCAAGCTCGCGAACCTGATAACCGCATTGAGACTGAAGCGGGTAGGATCGAGTCCTGGGACTACAACCGCGACGACTTCCAGTGCGCTGGTGTTGCTGTTCAACGAATCACCATTGAAAGAAATGGCCTTCACTTGCCTTCTTACACCCACGCTCCACAACTCATTTACATAGTCCAAGGTATAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

102

Amino Acids

11.54

Weight (kDa)

5.46

Isoelectric Point (pI)

64.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	41 - 100	2.7e-09	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	129, 189
AciI	CCGC	3 cut(s)	142, 158, 187
AclWI	GGATC	1 cut(s)	173
AcuI	CTGAAG	1 cut(s)	174
AgsI	TTSAA	2 cut(s)	221, 236
AjnI	CCWGG	1 cut(s)	173
AluBI	AGCT	6 cut(s)	17, 57, 68, 109, 118, 125
AluI	AGCT	6 cut(s)	17, 57, 68, 109, 118, 125
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	173
AoxI	GGCC	1 cut(s)	244
ApeKI	GCWGC	2 cut(s)	57, 65
AspLEI	GCGC	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	220
BbvI	GCAGC	2 cut(s)	44, 77
BciT130I	CCWGG	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	12
BisI	GCNGC	2 cut(s)	58, 66
BlpI	GCTNAGC	2 cut(s)	6, 61
BlsI	GCNGC	2 cut(s)	59, 67
Bme1390I	CCNGG	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	175
Bpu1102I	GCTNAGC	2 cut(s)	6, 61
BsaJI	CCNNGG	2 cut(s)	174, 295
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bse1I	ACTGG	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	175
BseDI	CCNNGG	2 cut(s)	174, 295
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	199
BseXI	GCAGC	2 cut(s)	44, 77
Bsh1236I	CGCG	2 cut(s)	129, 189
BshFI	GGCC	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	191
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	246
Bsp143I	GATC	2 cut(s)	112, 165
Bsp1720I	GCTNAGC	2 cut(s)	6, 61
Bsp68I	TCGCGA	1 cut(s)	129
BspACI	CCGC	3 cut(s)	142, 158, 187
BspANI	GGCC	1 cut(s)	246
BspCNI	CTCAG	1 cut(s)	94
BspFNI	CGCG	2 cut(s)	129, 189
BspPI	GGATC	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	2 cut(s)	174, 295
BssMI	GATC	2 cut(s)	112, 165
BssT1I	CCWWGG	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	53
BstC8I	GCNNGC	5 cut(s)	38, 70, 92, 107, 127
BstDEI	CTNAG	3 cut(s)	6, 61, 81
BstFNI	CGCG	2 cut(s)	129, 189
BstHHI	GCGC	1 cut(s)	206
BstKTI	GATC	2 cut(s)	115, 168
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	2 cut(s)	112, 165
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 212
BstNI	CCWGG	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	173
BstSFI	CTRYAG	1 cut(s)	12
BstUI	CGCG	2 cut(s)	129, 189
BstV1I	GCAGC	2 cut(s)	44, 77
BstXI	CCANNNNNNTGG	1 cut(s)	206
BsuRI	GGCC	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	206
BtuMI	TCGCGA	1 cut(s)	129
Cac8I	GCNNGC	5 cut(s)	38, 70, 92, 107, 127
CfoI	GCGC	1 cut(s)	206
DdeI	CTNAG	3 cut(s)	6, 61, 81
DpnI	GATC	2 cut(s)	114, 167
DpnII	GATC	2 cut(s)	112, 165
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	174
EcoRII	CCWGG	1 cut(s)	173
EcoT14I	CCWWGG	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	295
FaiI	YATR	3 cut(s)	14, 290, 302
FaqI	GGGAC	1 cut(s)	191
FauI	CCCGC	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	58, 66
Fsp4HI	GCNGC	2 cut(s)	58, 66
FspBI	CTAG	1 cut(s)	110
GlaI	GCGC	1 cut(s)	205
GluI	GCNGC	2 cut(s)	58, 66
HaeIII	GGCC	1 cut(s)	246
HhaI	GCGC	1 cut(s)	206
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HinfI	GANTC	2 cut(s)	170, 225
HphI	GGTGA	1 cut(s)	220
Hpy188III	TCNNGA	1 cut(s)	128
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	2 cut(s)	257, 267
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 212
HpyF3I	CTNAG	3 cut(s)	6, 61, 81
HspAI	GCGC	1 cut(s)	204
Kzo9I	GATC	2 cut(s)	112, 165
LmnI	GCTCC	2 cut(s)	123, 277
LpnPI	CCDG	7 cut(s)	104, 119, 147, 160, 187, 192, 212
Lsp1109I	GCAGC	2 cut(s)	44, 77
MaeI	CTAG	1 cut(s)	110
MalI	GATC	2 cut(s)	114, 167
MboI	GATC	2 cut(s)	112, 165
MboII	GAAGA	1 cut(s)	40
MlyI	GAGTC	1 cut(s)	179
MnlI	CCTC	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	175
MvnI	CGCG	2 cut(s)	129, 189
MwoI	GCNNNNNNNGC	2 cut(s)	115, 212
NdeII	GATC	2 cut(s)	112, 165
NruI	TCGCGA	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	225
PkrI	GCNGC	2 cut(s)	59, 67
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	173
PvuII	CAGCTG	1 cut(s)	57
RruI	TCGCGA	1 cut(s)	129
SatI	GCNGC	2 cut(s)	58, 66
Sau3AI	GATC	2 cut(s)	112, 165
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	175
SetI	ASST	8 cut(s)	19, 59, 70, 111, 120, 127, 136, 301
SfcI	CTRYAG	1 cut(s)	12
SsiI	CCGC	3 cut(s)	142, 158, 187
SspMI	CTAG	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	173
StyI	CCWWGG	1 cut(s)	295
TaqI	TCGA	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	225
TscAI	CASTG	1 cut(s)	206
TseI	GCWGC	2 cut(s)	57, 65
TspRI	CASTG	1 cut(s)	206
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.