Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Forward (+)

53868696 .. 53876962

Gene Structure 8267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG309600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1686 bp

ATGAGATTCCTTACACATCATTCGTGCTTCTCTCTCCCTTACATCCTCTACTCTCCTATAAATACTAACAGTCTACTCGCCGCTTCACCGCAACCCACAACTAGCTATCTGCCACCGATCATCACTATGGCCAAGCATTTAGCTCTCGTTTTCTCTCTTTGCTTTATTGTTCTCTTCCACGGCTGCTTAGCCAGTCGCCAACAATCTCAGTTCAGCCAGCAAAATGAGTGCCAGCTGAACCAGATCCAAGCCCGCGAGCCCGACAACCGCATTGAGTGCGAAGCAGGTCGGATCGAGTCCTGGGACTACAACCAGGATGACTTCCAGTGCGCTGGTGTCGCCGTTCAGAGAATCACCATTGAGAGCAACGGCCTTCACTTGCCATCTTACACTAACACCCCACGACTAGTTTACGTCGTCCAAGGTTGGGGTCATGTAGGAATGGTGCTCCCTGGCTGTCCCGAGACTTTTGAAGAATCCGAGCAATCTGATGAAGAACAACAGGGCCAGCAACAACAATGGCAAGGCCAACGAGGCCGCCAGCAACAGGGACGCCGACAGGGACAACAAGAGAGCTTTGAGCAGCTAGACCGTCACCAGAGGGTCCGACGGGTCAAGGAAGGTGATGTCATTGCCGTCCCCGCCGGAGTCACCTGCTGGACTCACAACCACGGTAACCAACCTCTTGTTTTTGTCAGTCTTTTTGATATGAGCAACAAGCGCAACCAGCTTGACCAAAACCCAAGGAAATTCTATCTTGCTGGTAACCCACAAGATGAGTTCAACTTCAACCAACAAGGCCAAAGCCAATGGGGACAACAAGGACAACAAGGACAACAAGGCCGTGGACAACAAGGAAGGACCAGGCGCCAACAGCAGGGAAACAACAACAACAACATCTTTGCCGGCTTCGACACACAGCTCCTCGCCGACGCTCTCAACATCGACCAACAGACCGCCCAGCGGCTCCAGGGACAGAACGACAACAGGCCACAGATTGTTAGGGTTCAGGGACGTTTCGACTTTGTCGAGCCACCACGATCACAGAGGGAGGAAAGACAAATGCAAGGACAACAAATGCAGGGACAACAAGGACAGTATGAACAGAATGGCATGGAGGAGCTCTTCTGTCACATGAAGATGAAACAGAACATTGGCAAACCTAAAATGGCCGACGTCTACAGCCCGCAAGCCGGTCGCATCAGCACCCTCAACAGCTTCAGCATGCCTATTCTCAGGCGCCTCCGCCTCAGTGCCGAGAGAGGCTTCTTCTACAACAACGCTATCTACAGCCCACACTGGAACTTGAACGCCCATGAAGTCTACTACGTCATCAGGGGCAGCGCTAGGGTTCAGGTGGTGAACGACAATGGCGAGACCATCTTGGACGACCAGGTCCGGCAGGGACAGCTCTTCATCGTGCCACAGAACCACGCTGTGTTGCAAAAGGCCATGAGCAACGGATACGAGTACATTGCCTTCAAGACCGATGACAATGCCATGATGAACACCATGGCTGGCAGGACCTCCGTCCTGCGGGCACTCCCCGACGTGGTCCTCGCCAACGCCTATCAGATGGACCGTGACCAGGCAAGGAACCTCAAGTACAACAGGCAGGAGACCGTTGCTTTGAGCTCCTCAAGGTCTTCCCGGTCCCAGAGGAACTGGTGGGCTCTTGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

561

Amino Acids

64.36

Weight (kDa)

8.31

Isoelectric Point (pI)

58.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	83 - 257	1.1e-26	Cupin
Cupin_1	PF00190	384 - 531	6.9e-38	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	662
AasI	GACNNNNNNGTC	1 cut(s)	1394
AatII	GACGTC	1 cut(s)	1179
Acc36I	ACCTGC	2 cut(s)	275, 662
AccB1I	GGYRCC	2 cut(s)	867, 1239
AccI	GTMKAC	3 cut(s)	73, 1179, 1323
AccII	CGCG	1 cut(s)	255
AclWI	GGATC	2 cut(s)	238, 299
AcoI	YGGCCR	2 cut(s)	129, 1170
AcsI	RAATTY	1 cut(s)	749
AcuI	CTGAAG	1 cut(s)	1204
AcyI	GRCGYC	4 cut(s)	553, 868, 1176, 1240
AdeI	CACNNNGTG	1 cut(s)	1438
AfaI	GTAC	2 cut(s)	1472, 1607
AfeI	AGCGCT	1 cut(s)	1345
AfiI	CCNNNNNNNGG	8 cut(s)	427, 547, 877, 963, 1193, 1536, 1552, 1588
AgsI	TTSAA	5 cut(s)	473, 784, 790, 1309, 1483
AhlI	ACTAGT	1 cut(s)	406
AjiI	CACGTC	1 cut(s)	1552
AjnI	CCWGG	7 cut(s)	299, 312, 451, 863, 969, 1392, 1587
Alw21I	GWGCWC	3 cut(s)	450, 1125, 1637
Alw26I	GTCTC	3 cut(s)	458, 1370, 1613
AlwI	GGATC	2 cut(s)	238, 299
Ama87I	CYCGRG	1 cut(s)	461
Aor51HI	AGCGCT	1 cut(s)	1345
ApeKI	GCWGC	3 cut(s)	183, 583, 1341
ApoI	RAATTY	1 cut(s)	749
ArsI	GACNNNNNNTTYG	2 cut(s)	1612, 1644
AspLEI	GCGC	5 cut(s)	332, 723, 870, 1242, 1346
AspS9I	GGNCC	8 cut(s)	505, 604, 861, 1396, 1524, 1555, 1579, 1653
AsuC2I	CCSGG	1 cut(s)	1651
AsuHPI	GGTGA	6 cut(s)	78, 346, 587, 635, 643, 1372
AvaI	CYCGRG	1 cut(s)	461
AvaII	GGWCC	7 cut(s)	604, 861, 1396, 1524, 1555, 1579, 1653
BaeGI	GKGCMC	1 cut(s)	1543
BalI	TGGCCA	1 cut(s)	131
BanI	GGYRCC	2 cut(s)	867, 1239
BanII	GRGCYC	4 cut(s)	261, 1125, 1637, 1675
BarI	GAAGNNNNNNTAC	2 cut(s)	1463, 1495
BbsI	GAAGAC	1 cut(s)	1638
Bbv12I	GWGCWC	3 cut(s)	450, 1125, 1637
BbvI	GCAGC	3 cut(s)	170, 595, 1353
BccI	CCATC	3 cut(s)	391, 1388, 1570
BceAI	ACGGC	5 cut(s)	196, 326, 385, 620, 828
BcgI	CGANNNNNNTGC	6 cut(s)	1178, 1212, 1457, 1478, 1491, 1512
BciT130I	CCWGG	7 cut(s)	301, 314, 453, 865, 971, 1394, 1589
BciVI	GTATCC	1 cut(s)	1457
BcnI	CCSGG	1 cut(s)	1651
BcoDI	GTCTC	3 cut(s)	458, 1370, 1613
BcuI	ACTAGT	1 cut(s)	406
BfaI	CTAG	4 cut(s)	102, 407, 587, 1347
BfmI	CTRYAG	2 cut(s)	1180, 1288
BfoI	RGCGCY	3 cut(s)	871, 1243, 1347
BfuAI	ACCTGC	2 cut(s)	275, 662
BfuI	GTATCC	1 cut(s)	1457
BglI	GCCNNNNNGGC	1 cut(s)	534
BisI	GCNGC	6 cut(s)	81, 184, 538, 584, 965, 1342
BlpI	GCTNAGC	1 cut(s)	187
BlsI	GCNGC	6 cut(s)	82, 185, 539, 585, 966, 1343
Bme1390I	CCNGG	8 cut(s)	301, 314, 453, 865, 971, 1394, 1589, 1651
Bme18I	GGWCC	7 cut(s)	604, 861, 1396, 1524, 1555, 1579, 1653
BmeT110I	CYCGRG	1 cut(s)	461
BmgBI	CACGTC	1 cut(s)	1552
BmgT120I	GGNCC	8 cut(s)	505, 604, 861, 1396, 1524, 1555, 1579, 1653
BmiI	GGNNCC	6 cut(s)	605, 869, 968, 1241, 1598, 1655
BmrFI	CCNGG	8 cut(s)	301, 314, 453, 865, 971, 1394, 1589, 1651
BmsI	GCATC	2 cut(s)	1209, 1669
BoxI	GACNNNNGTC	1 cut(s)	1529
BpiI	GAAGAC	1 cut(s)	1638
BpmI	CTGGAG	1 cut(s)	953
Bpu1102I	GCTNAGC	1 cut(s)	187
BpuEI	CTTGAG	2 cut(s)	1586, 1624
BpuMI	CCSGG	1 cut(s)	1651
BsaHI	GRCGYC	4 cut(s)	553, 868, 1176, 1240
BsaI	GGTCTC	2 cut(s)	1370, 1613
BsaJI	CCNNGG	9 cut(s)	178, 300, 421, 451, 670, 743, 844, 970, 1512
Bsc4I	CCNNNNNNNGG	8 cut(s)	427, 547, 877, 963, 1193, 1536, 1552, 1588
Bse118I	RCCGGY	2 cut(s)	905, 1193
Bse1I	ACTGG	4 cut(s)	192, 325, 1304, 1670
Bse3DI	GCAATG	2 cut(s)	630, 1473
BseBI	CCWGG	7 cut(s)	301, 314, 453, 865, 971, 1394, 1589
BseDI	CCNNGG	9 cut(s)	178, 300, 421, 451, 670, 743, 844, 970, 1512
BseGI	GGATG	2 cut(s)	42, 322
BseLI	CCNNNNNNNGG	8 cut(s)	427, 547, 877, 963, 1193, 1536, 1552, 1588
BseMI	GCAATG	2 cut(s)	630, 1473
BseMII	CTCAG	3 cut(s)	221, 1249, 1264
BseNI	ACTGG	4 cut(s)	192, 325, 1304, 1670
BseRI	GAGGAG	3 cut(s)	914, 1133, 1627
BseSI	GKGCMC	1 cut(s)	1543
BseXI	GCAGC	3 cut(s)	170, 595, 1353
BseYI	CCCAGC	1 cut(s)	960
Bsh1236I	CGCG	1 cut(s)	255
Bsh1285I	CGRYCG	1 cut(s)	1198
BshNI	GGYRCC	2 cut(s)	867, 1239
BsiEI	CGRYCG	1 cut(s)	1198
BsiHKAI	GWGCWC	3 cut(s)	450, 1125, 1637
BsiHKCI	CYCGRG	1 cut(s)	461
BsiSI	CCGG	5 cut(s)	645, 906, 1194, 1399, 1651
BslI	CCNNNNNNNGG	8 cut(s)	427, 547, 877, 963, 1193, 1536, 1552, 1588
BsmAI	GTCTC	3 cut(s)	458, 1370, 1613
Bso31I	GGTCTC	2 cut(s)	1370, 1613
BsoBI	CYCGRG	1 cut(s)	461
Bsp1286I	GDGCHC	6 cut(s)	261, 450, 1125, 1543, 1637, 1675
Bsp143I	GATC	4 cut(s)	117, 243, 291, 1040
Bsp1720I	GCTNAGC	1 cut(s)	187
Bsp19I	CCATGG	1 cut(s)	1512
BspCNI	CTCAG	3 cut(s)	220, 1248, 1263
BspFNI	CGCG	1 cut(s)	255
BspLI	GGNNCC	6 cut(s)	605, 869, 968, 1241, 1598, 1655
BspMI	ACCTGC	2 cut(s)	275, 662
BspPI	GGATC	2 cut(s)	238, 299
BspQI	GCTCTTC	2 cut(s)	1130, 1418
BspT107I	GGYRCC	2 cut(s)	867, 1239
BspTNI	GGTCTC	2 cut(s)	1370, 1613
BsrDI	GCAATG	2 cut(s)	630, 1473
BsrFI	RCCGGY	2 cut(s)	905, 1193
BsrI	ACTGG	4 cut(s)	192, 325, 1304, 1670
BssAI	RCCGGY	2 cut(s)	905, 1193
BssECI	CCNNGG	9 cut(s)	178, 300, 421, 451, 670, 743, 844, 970, 1512
BssMI	GATC	4 cut(s)	117, 243, 291, 1040
BssNI	GRCGYC	4 cut(s)	553, 868, 1176, 1240
BssT1I	CCWWGG	3 cut(s)	421, 743, 1512
Bst2UI	CCWGG	7 cut(s)	301, 314, 453, 865, 971, 1394, 1589
Bst4CI	ACNGT	6 cut(s)	71, 593, 674, 1098, 1583, 1624
Bst6I	CTCTTC	3 cut(s)	179, 1130, 1418
BstACI	GRCGYC	4 cut(s)	553, 868, 1176, 1240
BstAPI	GCANNNNNTGC	1 cut(s)	276
BstDEI	CTNAG	4 cut(s)	187, 207, 1235, 1250
BstDSI	CCRYGG	4 cut(s)	178, 670, 844, 1512
BstEII	GGTNACC	2 cut(s)	674, 764
BstF5I	GGATG	2 cut(s)	42, 322
BstFNI	CGCG	1 cut(s)	255
BstH2I	RGCGCY	3 cut(s)	871, 1243, 1347
BstHHI	GCGC	5 cut(s)	332, 723, 870, 1242, 1346
BstKTI	GATC	4 cut(s)	120, 246, 294, 1043
BstMAI	GTCTC	3 cut(s)	458, 1370, 1613
BstMBI	GATC	4 cut(s)	117, 243, 291, 1040
BstMCI	CGRYCG	1 cut(s)	1198
BstMWI	GCNNNNNNNGC	9 cut(s)	276, 338, 534, 641, 720, 727, 874, 1408, 1679
BstNI	CCWGG	7 cut(s)	301, 314, 453, 865, 971, 1394, 1589
BstNSI	RCATGY	1 cut(s)	1228
BstPAI	GACNNNNGTC	1 cut(s)	1529
BstPI	GGTNACC	2 cut(s)	674, 764
BstSCI	CCNGG	8 cut(s)	299, 312, 451, 863, 969, 1392, 1587, 1649
BstSFI	CTRYAG	2 cut(s)	1180, 1288
BstSLI	GKGCMC	1 cut(s)	1543
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	3 cut(s)	170, 595, 1353
BstV2I	GAAGAC	1 cut(s)	1638
BstX2I	RGATCY	1 cut(s)	243
BstXI	CCANNNNNNTGG	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	243
BsuI	GTATCC	1 cut(s)	1457
BtgI	CCRYGG	4 cut(s)	178, 670, 844, 1512
BtrI	CACGTC	1 cut(s)	1552
BtsCI	GGATG	2 cut(s)	42, 322
BtsIMutI	CAGTG	3 cut(s)	332, 1258, 1297
BveI	ACCTGC	2 cut(s)	275, 662
CfoI	GCGC	5 cut(s)	332, 723, 870, 1242, 1346
Cfr10I	RCCGGY	2 cut(s)	905, 1193
Cfr13I	GGNCC	8 cut(s)	505, 604, 861, 1396, 1524, 1555, 1579, 1653
CseI	GACGC	2 cut(s)	561, 941
CsiI	ACCWGGT	1 cut(s)	1392
Csp6I	GTAC	2 cut(s)	1471, 1606
CviAII	CATG	8 cut(s)	434, 1114, 1135, 1225, 1316, 1453, 1501, 1513
CviQI	GTAC	2 cut(s)	1471, 1606
DdeI	CTNAG	4 cut(s)	187, 207, 1235, 1250
DinI	GGCGCC	2 cut(s)	869, 1241
DpnI	GATC	4 cut(s)	119, 245, 293, 1042
DpnII	GATC	4 cut(s)	117, 243, 291, 1040
DraIII	CACNNNGTG	1 cut(s)	1438
DrdI	GACNNNNNNGTC	1 cut(s)	1394
DseDI	GACNNNNNNGTC	1 cut(s)	1394
EaeI	YGGCCR	2 cut(s)	129, 1170
Eam1104I	CTCTTC	3 cut(s)	179, 1130, 1418
EarI	CTCTTC	3 cut(s)	179, 1130, 1418
EciI	GGCGGA	1 cut(s)	1235
Ecl136II	GAGCTC	2 cut(s)	1123, 1635
Eco130I	CCWWGG	3 cut(s)	421, 743, 1512
Eco24I	GRGCYC	4 cut(s)	261, 1125, 1637, 1675
Eco31I	GGTCTC	2 cut(s)	1370, 1613
Eco47I	GGWCC	7 cut(s)	604, 861, 1396, 1524, 1555, 1579, 1653
Eco47III	AGCGCT	1 cut(s)	1345
Eco53kI	GAGCTC	2 cut(s)	1123, 1635
Eco57I	CTGAAG	1 cut(s)	1204
Eco88I	CYCGRG	1 cut(s)	461
Eco91I	GGTNACC	2 cut(s)	674, 764
EcoICRI	GAGCTC	2 cut(s)	1123, 1635
EcoO109I	RGGNCCY	1 cut(s)	1524
EcoO65I	GGTNACC	2 cut(s)	674, 764
EcoRII	CCWGG	7 cut(s)	299, 312, 451, 863, 969, 1392, 1587
EcoT14I	CCWWGG	3 cut(s)	421, 743, 1512
EcoT38I	GRGCYC	4 cut(s)	261, 1125, 1637, 1675
EgeI	GGCGCC	2 cut(s)	869, 1241
EheI	GGCGCC	2 cut(s)	869, 1241
ErhI	CCWWGG	3 cut(s)	421, 743, 1512
FaeI	CATG	8 cut(s)	437, 1117, 1138, 1228, 1319, 1456, 1504, 1516
FatI	CATG	8 cut(s)	433, 1113, 1134, 1224, 1315, 1452, 1500, 1512
FauI	CCCGC	4 cut(s)	260, 649, 1194, 1530
FblI	GTMKAC	3 cut(s)	73, 1179, 1323
Fnu4HI	GCNGC	6 cut(s)	81, 184, 538, 584, 965, 1342
FokI	GGATG	2 cut(s)	29, 329
FriOI	GRGCYC	4 cut(s)	261, 1125, 1637, 1675
Fsp4HI	GCNGC	6 cut(s)	81, 184, 538, 584, 965, 1342
FspBI	CTAG	4 cut(s)	102, 407, 587, 1347
GlaI	GCGC	5 cut(s)	331, 722, 869, 1241, 1345
GluI	GCNGC	6 cut(s)	81, 184, 538, 584, 965, 1342
GsaI	CCCAGC	1 cut(s)	964
GsuI	CTGGAG	1 cut(s)	953
HaeII	RGCGCY	3 cut(s)	871, 1243, 1347
HapII	CCGG	5 cut(s)	645, 906, 1194, 1399, 1651
HgaI	GACGC	2 cut(s)	561, 941
HhaI	GCGC	5 cut(s)	332, 723, 870, 1242, 1346
Hin1I	GRCGYC	4 cut(s)	553, 868, 1176, 1240
Hin1II	CATG	8 cut(s)	437, 1117, 1138, 1228, 1319, 1456, 1504, 1516
Hin6I	GCGC	5 cut(s)	330, 721, 868, 1240, 1344
HinP1I	GCGC	5 cut(s)	330, 721, 868, 1240, 1344
HinfI	GANTC	6 cut(s)	6, 296, 351, 476, 648, 661
HpaII	CCGG	5 cut(s)	645, 906, 1194, 1399, 1651
HphI	GGTGA	6 cut(s)	78, 346, 587, 635, 643, 1372
Hpy166II	GTNNAC	6 cut(s)	74, 412, 848, 1180, 1324, 1363
Hpy188I	TCNGA	6 cut(s)	291, 348, 481, 490, 608, 1575
Hpy188III	TCNNGA	3 cut(s)	461, 1483, 1676
Hpy8I	GTNNAC	6 cut(s)	74, 412, 848, 1180, 1324, 1363
Hpy99I	CGWCG	5 cut(s)	419, 612, 935, 1178, 1553
HpyAV	CCTTC	4 cut(s)	383, 614, 852, 1489
HpyCH4III	ACNGT	6 cut(s)	71, 593, 674, 1098, 1583, 1624
HpyCH4IV	ACGT	5 cut(s)	414, 1015, 1176, 1329, 1551
HpyCH4V	TGCA	3 cut(s)	1066, 1081, 1444
HpyF10VI	GCNNNNNNNGC	9 cut(s)	276, 338, 534, 641, 720, 727, 874, 1408, 1679
HpyF3I	CTNAG	4 cut(s)	187, 207, 1235, 1250
HpySE526I	ACGT	5 cut(s)	414, 1015, 1176, 1329, 1551
Hsp92I	GRCGYC	4 cut(s)	553, 868, 1176, 1240
Hsp92II	CATG	8 cut(s)	437, 1117, 1138, 1228, 1319, 1456, 1504, 1516
HspAI	GCGC	5 cut(s)	330, 721, 868, 1240, 1344
KasI	GGCGCC	2 cut(s)	867, 1239
KroI	GCCGGC	1 cut(s)	905
KroNI	GCCGGC	1 cut(s)	907
Kzo9I	GATC	4 cut(s)	117, 243, 291, 1040
LguI	GCTCTTC	2 cut(s)	1130, 1418
LmnI	GCTCC	5 cut(s)	453, 927, 972, 1120, 1640
Lsp1109I	GCAGC	3 cut(s)	170, 595, 1353
LweI	GCATC	2 cut(s)	1209, 1669
MabI	ACCWGGT	1 cut(s)	1392
MaeI	CTAG	4 cut(s)	102, 407, 587, 1347
MaeII	ACGT	5 cut(s)	414, 1015, 1176, 1329, 1551
MaeIII	GTNAC	6 cut(s)	593, 649, 674, 764, 1130, 1583
MalI	GATC	4 cut(s)	119, 245, 293, 1042
MboI	GATC	4 cut(s)	117, 243, 291, 1040
MboII	GAAGA	8 cut(s)	166, 485, 506, 1117, 1150, 1261, 1405, 1638
MflI	RGATCY	1 cut(s)	243
MhlI	GDGCHC	6 cut(s)	261, 450, 1125, 1543, 1637, 1675
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	1 cut(s)	749
MluNI	TGGCCA	1 cut(s)	131
Mly113I	GGCGCC	2 cut(s)	868, 1240
MlyI	GAGTC	3 cut(s)	305, 655, 657
MmeI	TCCRAC	2 cut(s)	269, 631
Mox20I	TGGCCA	1 cut(s)	131
MroNI	GCCGGC	1 cut(s)	905
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	1 cut(s)	1684
MslI	CAYNNNNRTG	2 cut(s)	125, 1139
Msp20I	TGGCCA	1 cut(s)	131
MspA1I	CMGCKG	2 cut(s)	235, 964
MspI	CCGG	5 cut(s)	645, 906, 1194, 1399, 1651
MspR9I	CCNGG	8 cut(s)	301, 314, 453, 865, 971, 1394, 1589, 1651
MvaI	CCWGG	7 cut(s)	301, 314, 453, 865, 971, 1394, 1589
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	9 cut(s)	276, 338, 534, 641, 720, 727, 874, 1408, 1679
NaeI	GCCGGC	1 cut(s)	907
NarI	GGCGCC	2 cut(s)	868, 1240
NciI	CCSGG	1 cut(s)	1651
NcoI	CCATGG	1 cut(s)	1512
NdeII	GATC	4 cut(s)	117, 243, 291, 1040
NgoMIV	GCCGGC	1 cut(s)	905
NlaIII	CATG	8 cut(s)	437, 1117, 1138, 1228, 1319, 1456, 1504, 1516
NlaIV	GGNNCC	6 cut(s)	605, 869, 968, 1241, 1598, 1655
NmeAIII	GCCGAG	1 cut(s)	1282
NmuCI	GTSAC	4 cut(s)	593, 649, 1130, 1583
NspI	RCATGY	1 cut(s)	1228
PaeI	GCATGC	1 cut(s)	1228
PaqCI	CACCTGC	1 cut(s)	662
PciSI	GCTCTTC	2 cut(s)	1130, 1418
PcsI	WCGNNNNNNNCGW	2 cut(s)	1026, 1371
PdiI	GCCGGC	1 cut(s)	907
PfeI	GAWTC	3 cut(s)	6, 351, 476
PflFI	GACNNNGTC	3 cut(s)	1025, 1394, 1553
PkrI	GCNGC	6 cut(s)	82, 185, 539, 585, 966, 1343
PleI	GAGTC	3 cut(s)	304, 655, 656
PluTI	GGCGCC	2 cut(s)	871, 1243
PpsI	GAGTC	3 cut(s)	304, 655, 656
PpuMI	RGGWCCY	1 cut(s)	1524
PshAI	GACNNNNGTC	1 cut(s)	1529
Psp124BI	GAGCTC	2 cut(s)	1125, 1637
Psp5II	RGGWCCY	1 cut(s)	1524
Psp6I	CCWGG	7 cut(s)	299, 312, 451, 863, 969, 1392, 1587
PspEI	GGTNACC	2 cut(s)	674, 764
PspFI	CCCAGC	1 cut(s)	960
PspGI	CCWGG	7 cut(s)	299, 312, 451, 863, 969, 1392, 1587
PspN4I	GGNNCC	6 cut(s)	605, 869, 968, 1241, 1598, 1655
PspPI	GGNCC	8 cut(s)	505, 604, 861, 1396, 1524, 1555, 1579, 1653
PspPPI	RGGWCCY	1 cut(s)	1524
PsrI	GAACNNNNNNTAC	2 cut(s)	1589, 1621
PsuI	RGATCY	1 cut(s)	243
PsyI	GACNNNGTC	3 cut(s)	1025, 1394, 1553
PvuII	CAGCTG	1 cut(s)	235
RsaI	GTAC	2 cut(s)	1472, 1607
RsaNI	GTAC	2 cut(s)	1471, 1606
RseI	CAYNNNNRTG	2 cut(s)	125, 1139
SacI	GAGCTC	2 cut(s)	1125, 1637
SapI	GCTCTTC	2 cut(s)	1130, 1418
SaqAI	TTAA	1 cut(s)	1684
SatI	GCNGC	6 cut(s)	81, 184, 538, 584, 965, 1342
Sau3AI	GATC	4 cut(s)	117, 243, 291, 1040
Sau96I	GGNCC	8 cut(s)	505, 604, 861, 1396, 1524, 1555, 1579, 1653
SchI	GAGTC	3 cut(s)	305, 655, 657
ScrFI	CCNGG	8 cut(s)	301, 314, 453, 865, 971, 1394, 1589, 1651
SduI	GDGCHC	6 cut(s)	261, 450, 1125, 1543, 1637, 1675
SexAI	ACCWGGT	1 cut(s)	1392
SfaNI	GCATC	2 cut(s)	1209, 1669
SfcI	CTRYAG	2 cut(s)	1180, 1288
SfiI	GGCCNNNNNGGCC	1 cut(s)	534
SfoI	GGCGCC	2 cut(s)	869, 1241
SinI	GGWCC	7 cut(s)	604, 861, 1396, 1524, 1555, 1579, 1653
SmiMI	CAYNNNNRTG	2 cut(s)	125, 1139
SmlI	CTYRAG	2 cut(s)	1601, 1639
SmoI	CTYRAG	2 cut(s)	1601, 1639
SpeI	ACTAGT	1 cut(s)	406
SphI	GCATGC	1 cut(s)	1228
Sse9I	AATT	1 cut(s)	749
SspDI	GGCGCC	2 cut(s)	867, 1239
SspMI	CTAG	4 cut(s)	102, 407, 587, 1347
SstI	GAGCTC	2 cut(s)	1125, 1637
StyD4I	CCNGG	8 cut(s)	299, 312, 451, 863, 969, 1392, 1587, 1649
StyI	CCWWGG	3 cut(s)	421, 743, 1512
TaaI	ACNGT	6 cut(s)	71, 593, 674, 1098, 1583, 1624
TaiI	ACGT	5 cut(s)	417, 1018, 1179, 1332, 1554
TaqI	TCGA	5 cut(s)	294, 912, 945, 1020, 1029
TaqII	GACCGA	1 cut(s)	1502
TasI	AATT	1 cut(s)	749
TatI	WGTACW	2 cut(s)	1470, 1605
TauI	GCSGC	3 cut(s)	83, 540, 967
TfiI	GAWTC	3 cut(s)	6, 351, 476
Tru1I	TTAA	1 cut(s)	1684
Tru9I	TTAA	1 cut(s)	1684
TscAI	CASTG	3 cut(s)	332, 1258, 1304
TseFI	GTSAC	4 cut(s)	593, 649, 1130, 1583
TseI	GCWGC	3 cut(s)	183, 583, 1341
Tsp45I	GTSAC	4 cut(s)	593, 649, 1130, 1583
TspDTI	ATGAA	7 cut(s)	507, 1116, 1151, 1157, 1332, 1405, 1520
TspGWI	ACGGA	2 cut(s)	1476, 1519
TspRI	CASTG	3 cut(s)	332, 1258, 1304
Tth111I	GACNNNGTC	3 cut(s)	1025, 1394, 1553
VpaK11BI	GGWCC	7 cut(s)	604, 861, 1396, 1524, 1555, 1579, 1653
XapI	RAATTY	1 cut(s)	749
XceI	RCATGY	1 cut(s)	1228
XmiI	GTMKAC	3 cut(s)	73, 1179, 1323
XspI	CTAG	4 cut(s)	102, 407, 587, 1347
ZraI	GACGTC	1 cut(s)	1177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.