Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Forward (+)

50322952 .. 50324391

Gene Structure 1440 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG302700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGACGGTGACCAACCTCTTGTTGCTGTCAGTCTTCTTGACATCAGCAACAACCAAAACCAGCTTGATCGTAACCCTAGGCCGCCACAGTCACAACAGGTGGAAAGACAAGAACAGGGAATTCAGAGACAACAGGGACAGAATGGTCTTGAGGAAACTCTCTGCAACTGGAAGATCAGAGAGAATATTGGCAGGCCTTCACGTGCTGACGTCTTCAGTCCCCAAGCCGGTCGCATCAGCACCCTCAACAGCTTTAAGTTGCCTATTCTCAGGTACCTTGACCTCAGCGCTGAGAGAGGCTTCTTCTACAATCCCACACTGGAACTTGAACGCCCACGAAGTGTACTACGTCATTCGAGGTAGCGCTAGGGTTCAGGTTGTGAACGACAACGGCCAGGCCATCTTGGACAACGAAGTCCGCCAGGGACAGCTCTTCATTGTGCCACAGAACCACGCAGTGTTACAAAAGGCTAGCAACAACGGCTACGAGTACATTGCCTTTAAGACCCAGGACAATGCCAAGATTAACACTCTGGCAGGCCGGACCTCAGTCTTGCGGGCACTCCCCGACGTCGTCCTTGCTAACGCATACCAGATTGACCGACAACAGGCAAGGAATCTCAAATACAACAGACAGGAGACTGTTGCTTTGAGCTCTTCAAGGTCTTCCCAATCCCAGAGGAGCTGGTGGGCTATTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

233

Amino Acids

25.96

Weight (kDa)

10.5

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	97 - 204	2e-29	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	143, 413
AatII	GACGTC	2 cut(s)	212, 573
Acc65I	GGTACC	1 cut(s)	272
AccB1I	GGYRCC	1 cut(s)	272
AciI	CCGC	3 cut(s)	82, 418, 556
AcoI	YGGCCR	1 cut(s)	391
AcsI	RAATTY	1 cut(s)	119
AcuI	CTGAAG	1 cut(s)	198
AcvI	CACGTG	1 cut(s)	202
AcyI	GRCGYC	2 cut(s)	209, 570
AdeI	CACNNNGTG	2 cut(s)	340, 457
AfaI	GTAC	3 cut(s)	274, 344, 491
AfeI	AGCGCT	2 cut(s)	288, 364
AfiI	CCNNNNNNNGG	2 cut(s)	226, 607
AgsI	TTSAA	2 cut(s)	328, 660
AjnI	CCWGG	3 cut(s)	393, 420, 507
AluBI	AGCT	5 cut(s)	63, 251, 430, 654, 684
AluI	AGCT	5 cut(s)	63, 251, 430, 654, 684
Alw21I	GWGCWC	1 cut(s)	656
Alw26I	GTCTC	2 cut(s)	120, 632
Aor51HI	AGCGCT	2 cut(s)	288, 364
AoxI	GGCC	5 cut(s)	79, 193, 391, 396, 538
ApoI	RAATTY	1 cut(s)	119
ArsI	GACNNNNNNTTYG	2 cut(s)	631, 663
Asp718I	GGTACC	1 cut(s)	272
AspA2I	CCTAGG	1 cut(s)	76
AspLEI	GCGC	2 cut(s)	289, 365
AspS9I	GGNCC	1 cut(s)	543
AsuHPI	GGTGA	1 cut(s)	19
AsuNHI	GCTAGC	1 cut(s)	470
AvaII	GGWCC	1 cut(s)	543
AvrII	CCTAGG	1 cut(s)	76
BaeGI	GKGCMC	1 cut(s)	562
BanI	GGYRCC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	656
BbrPI	CACGTG	1 cut(s)	202
BbsI	GAAGAC	3 cut(s)	25, 204, 657
Bbv12I	GWGCWC	1 cut(s)	656
BbvCI	CCTCAGC	1 cut(s)	283
BccI	CCATC	1 cut(s)	407
BceAI	ACGGC	2 cut(s)	406, 496
BcgI	CGANNNNNNTGC	2 cut(s)	476, 510
BciT130I	CCWGG	3 cut(s)	395, 422, 509
BcoDI	GTCTC	2 cut(s)	120, 632
BfaI	CTAG	3 cut(s)	77, 366, 471
BfoI	RGCGCY	2 cut(s)	290, 366
BisI	GCNGC	1 cut(s)	82
BlnI	CCTAGG	1 cut(s)	76
BlsI	GCNGC	1 cut(s)	83
Bme1390I	CCNGG	3 cut(s)	395, 422, 509
Bme18I	GGWCC	1 cut(s)	543
BmgT120I	GGNCC	1 cut(s)	543
BmiI	GGNNCC	1 cut(s)	274
BmrFI	CCNGG	3 cut(s)	395, 422, 509
BmsI	GCATC	1 cut(s)	242
BmtI	GCTAGC	1 cut(s)	474
BoxI	GACNNNNGTC	1 cut(s)	548
BpiI	GAAGAC	3 cut(s)	25, 204, 657
Bpu10I	CCTNAGC	1 cut(s)	283
BpuEI	CTTGAG	1 cut(s)	169
BsaAI	YACGTR	1 cut(s)	202
BsaHI	GRCGYC	2 cut(s)	209, 570
BsaJI	CCNNGG	3 cut(s)	76, 421, 507
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 607
Bse118I	RCCGGY	1 cut(s)	226
Bse1I	ACTGG	2 cut(s)	172, 323
Bse3DI	GCAATG	1 cut(s)	492
BseBI	CCWGG	3 cut(s)	395, 422, 509
BseDI	CCNNGG	3 cut(s)	76, 421, 507
BseLI	CCNNNNNNNGG	2 cut(s)	226, 607
BseMI	GCAATG	1 cut(s)	492
BseMII	CTCAG	4 cut(s)	281, 282, 297, 561
BseNI	ACTGG	2 cut(s)	172, 323
BseRI	GAGGAG	1 cut(s)	694
BseSI	GKGCMC	1 cut(s)	562
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	5 cut(s)	81, 195, 393, 398, 540
BshNI	GGYRCC	1 cut(s)	272
BsiEI	CGRYCG	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	656
BsiSI	CCGG	2 cut(s)	227, 541
BslFI	GGGAC	3 cut(s)	149, 203, 438
BslI	CCNNNNNNNGG	2 cut(s)	226, 607
BsmAI	GTCTC	2 cut(s)	120, 632
BsmFI	GGGAC	3 cut(s)	149, 203, 438
BsnI	GGCC	5 cut(s)	81, 195, 393, 398, 540
Bsp1286I	GDGCHC	2 cut(s)	562, 656
Bsp143I	GATC	2 cut(s)	66, 173
BspACI	CCGC	3 cut(s)	82, 418, 556
BspANI	GGCC	5 cut(s)	81, 195, 393, 398, 540
BspCNI	CTCAG	4 cut(s)	281, 282, 296, 560
BspLI	GGNNCC	1 cut(s)	274
BspOI	GCTAGC	1 cut(s)	474
BspQI	GCTCTTC	2 cut(s)	437, 661
BspT107I	GGYRCC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	492
BsrFI	RCCGGY	1 cut(s)	226
BsrI	ACTGG	2 cut(s)	172, 323
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	3 cut(s)	76, 421, 507
BssMI	GATC	2 cut(s)	66, 173
BssNI	GRCGYC	2 cut(s)	209, 570
BssT1I	CCWWGG	1 cut(s)	76
Bst2UI	CCWGG	3 cut(s)	395, 422, 509
Bst4CI	ACNGT	3 cut(s)	7, 89, 643
Bst6I	CTCTTC	2 cut(s)	437, 661
BstACI	GRCGYC	2 cut(s)	209, 570
BstBAI	YACGTR	1 cut(s)	202
BstC8I	GCNNGC	4 cut(s)	193, 472, 538, 558
BstDEI	CTNAG	4 cut(s)	268, 283, 290, 547
BstEII	GGTNACC	1 cut(s)	7
BstH2I	RGCGCY	2 cut(s)	290, 366
BstHHI	GCGC	2 cut(s)	289, 365
BstKTI	GATC	2 cut(s)	69, 176
BstMAI	GTCTC	2 cut(s)	120, 632
BstMBI	GATC	2 cut(s)	66, 173
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	1 cut(s)	480
BstNI	CCWGG	3 cut(s)	395, 422, 509
BstPAI	GACNNNNGTC	1 cut(s)	548
BstPI	GGTNACC	1 cut(s)	7
BstSCI	CCNGG	3 cut(s)	393, 420, 507
BstSLI	GKGCMC	1 cut(s)	562
BstV2I	GAAGAC	3 cut(s)	25, 204, 657
BsuRI	GGCC	5 cut(s)	81, 195, 393, 398, 540
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	2 cut(s)	316, 462
Cac8I	GCNNGC	4 cut(s)	193, 472, 538, 558
CfoI	GCGC	2 cut(s)	289, 365
Cfr10I	RCCGGY	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	543
Csp6I	GTAC	3 cut(s)	273, 343, 490
CviQI	GTAC	3 cut(s)	273, 343, 490
DdeI	CTNAG	4 cut(s)	268, 283, 290, 547
DpnI	GATC	2 cut(s)	68, 175
DpnII	GATC	2 cut(s)	66, 173
DraIII	CACNNNGTG	2 cut(s)	340, 457
DrdI	GACNNNNNNGTC	2 cut(s)	143, 413
DseDI	GACNNNNNNGTC	2 cut(s)	143, 413
EaeI	YGGCCR	1 cut(s)	391
Eam1104I	CTCTTC	2 cut(s)	437, 661
EarI	CTCTTC	2 cut(s)	437, 661
EciI	GGCGGA	1 cut(s)	407
Ecl136II	GAGCTC	1 cut(s)	654
Eco130I	CCWWGG	1 cut(s)	76
Eco147I	AGGCCT	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	656
Eco47I	GGWCC	1 cut(s)	543
Eco47III	AGCGCT	2 cut(s)	288, 364
Eco53kI	GAGCTC	1 cut(s)	654
Eco57I	CTGAAG	1 cut(s)	198
Eco72I	CACGTG	1 cut(s)	202
Eco91I	GGTNACC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	654
EcoO65I	GGTNACC	1 cut(s)	7
EcoRI	GAATTC	1 cut(s)	119
EcoRII	CCWGG	3 cut(s)	393, 420, 507
EcoT14I	CCWWGG	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	656
ErhI	CCWWGG	1 cut(s)	76
FaiI	YATR	2 cut(s)	589, 700
FaqI	GGGAC	3 cut(s)	149, 203, 438
FauI	CCCGC	1 cut(s)	549
Fnu4HI	GCNGC	1 cut(s)	82
FriOI	GRGCYC	1 cut(s)	656
Fsp4HI	GCNGC	1 cut(s)	82
FspBI	CTAG	3 cut(s)	77, 366, 471
GlaI	GCGC	2 cut(s)	288, 364
GluI	GCNGC	1 cut(s)	82
HaeII	RGCGCY	2 cut(s)	290, 366
HaeIII	GGCC	5 cut(s)	81, 195, 393, 398, 540
HapII	CCGG	2 cut(s)	227, 541
HhaI	GCGC	2 cut(s)	289, 365
Hin1I	GRCGYC	2 cut(s)	209, 570
Hin6I	GCGC	2 cut(s)	287, 363
HinP1I	GCGC	2 cut(s)	287, 363
HinfI	GANTC	1 cut(s)	616
HpaII	CCGG	2 cut(s)	227, 541
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	2 cut(s)	343, 382
Hpy188I	TCNGA	2 cut(s)	125, 178
Hpy188III	TCNNGA	2 cut(s)	37, 148
Hpy8I	GTNNAC	2 cut(s)	343, 382
Hpy99I	CGWCG	2 cut(s)	572, 575
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	3 cut(s)	7, 89, 643
HpyCH4IV	ACGT	4 cut(s)	201, 209, 348, 570
HpyCH4V	TGCA	2 cut(s)	164, 698
HpyF10VI	GCNNNNNNNGC	1 cut(s)	480
HpyF3I	CTNAG	4 cut(s)	268, 283, 290, 547
HpySE526I	ACGT	4 cut(s)	201, 209, 348, 570
Hsp92I	GRCGYC	2 cut(s)	209, 570
HspAI	GCGC	2 cut(s)	287, 363
KpnI	GGTACC	1 cut(s)	276
Kzo9I	GATC	2 cut(s)	66, 173
LguI	GCTCTTC	2 cut(s)	437, 661
LmnI	GCTCC	1 cut(s)	681
LweI	GCATC	1 cut(s)	242
MaeI	CTAG	3 cut(s)	77, 366, 471
MaeII	ACGT	4 cut(s)	201, 209, 348, 570
MaeIII	GTNAC	4 cut(s)	7, 70, 89, 459
MalI	GATC	2 cut(s)	68, 175
MboI	GATC	2 cut(s)	66, 173
MboII	GAAGA	7 cut(s)	25, 183, 204, 294, 424, 648, 657
MhlI	GDGCHC	2 cut(s)	562, 656
MluCI	AATT	1 cut(s)	119
MnlI	CCTC	8 cut(s)	26, 144, 253, 289, 292, 350, 556, 672
MseI	TTAA	3 cut(s)	254, 501, 525
MspI	CCGG	2 cut(s)	227, 541
MspR9I	CCNGG	3 cut(s)	395, 422, 509
MvaI	CCWGG	3 cut(s)	395, 422, 509
MwoI	GCNNNNNNNGC	1 cut(s)	480
NdeII	GATC	2 cut(s)	66, 173
NheI	GCTAGC	1 cut(s)	470
NlaIV	GGNNCC	1 cut(s)	274
NmuCI	GTSAC	2 cut(s)	7, 89
PceI	AGGCCT	1 cut(s)	195
PciSI	GCTCTTC	2 cut(s)	437, 661
PfeI	GAWTC	1 cut(s)	616
PflFI	GACNNNGTC	1 cut(s)	572
PkrI	GCNGC	1 cut(s)	83
PmaCI	CACGTG	1 cut(s)	202
PmlI	CACGTG	1 cut(s)	202
Ppu21I	YACGTR	1 cut(s)	202
PshAI	GACNNNNGTC	1 cut(s)	548
Psp124BI	GAGCTC	1 cut(s)	656
Psp6I	CCWGG	3 cut(s)	393, 420, 507
PspCI	CACGTG	1 cut(s)	202
PspEI	GGTNACC	1 cut(s)	7
PspGI	CCWGG	3 cut(s)	393, 420, 507
PspN4I	GGNNCC	1 cut(s)	274
PspPI	GGNCC	1 cut(s)	543
PsyI	GACNNNGTC	1 cut(s)	572
RsaI	GTAC	3 cut(s)	274, 344, 491
RsaNI	GTAC	3 cut(s)	273, 343, 490
SacI	GAGCTC	1 cut(s)	656
SapI	GCTCTTC	2 cut(s)	437, 661
SaqAI	TTAA	3 cut(s)	254, 501, 525
SatI	GCNGC	1 cut(s)	82
Sau3AI	GATC	2 cut(s)	66, 173
Sau96I	GGNCC	1 cut(s)	543
ScrFI	CCNGG	3 cut(s)	395, 422, 509
SduI	GDGCHC	2 cut(s)	562, 656
SfaNI	GCATC	1 cut(s)	242
SinI	GGWCC	1 cut(s)	543
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
Sse9I	AATT	1 cut(s)	119
SseBI	AGGCCT	1 cut(s)	195
SsiI	CCGC	3 cut(s)	82, 418, 556
SspI	AATATT	1 cut(s)	186
SspMI	CTAG	3 cut(s)	77, 366, 471
SstI	GAGCTC	1 cut(s)	656
StuI	AGGCCT	1 cut(s)	195
StyD4I	CCNGG	3 cut(s)	393, 420, 507
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	3 cut(s)	7, 89, 643
TaiI	ACGT	4 cut(s)	204, 212, 351, 573
TaqI	TCGA	1 cut(s)	355
TaqII	GACCGA	1 cut(s)	615
TasI	AATT	1 cut(s)	119
TatI	WGTACW	2 cut(s)	342, 489
TauI	GCSGC	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	616
Tru1I	TTAA	3 cut(s)	254, 501, 525
Tru9I	TTAA	3 cut(s)	254, 501, 525
TscAI	CASTG	2 cut(s)	323, 462
TseFI	GTSAC	2 cut(s)	7, 89
Tsp45I	GTSAC	2 cut(s)	7, 89
TspDTI	ATGAA	1 cut(s)	424
TspRI	CASTG	2 cut(s)	323, 462
Tth111I	GACNNNGTC	1 cut(s)	572
VpaK11BI	GGWCC	1 cut(s)	543
XapI	RAATTY	1 cut(s)	119
XmaJI	CCTAGG	1 cut(s)	76
XspI	CTAG	3 cut(s)	77, 366, 471
ZraI	GACGTC	2 cut(s)	210, 571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.