Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Forward (+)

50284721 .. 50287288

Gene Structure 2568 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG302000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1542 bp

ATGGCTAGGTCTTTAGCTATCTCTCTTTGCTTGCTTGTTCTCTTTCATGGCTGCTTAGCCTATCGCCAACAGTCTCAGTACAGCCAGAGCGGGCAAAATGAGTGCCAGATCAACCAGCTCCAGGCCCGCGAGCCCGACAACCGCATTGAGACTGAGGCGGGTCGGATCGAGTCATGGGACTACAACCAGGATGACTTCCAGTGCACCGGAGTCGCCGTTCAGAGAATCATCGTCGAGCGCAACGGCCTTCACTTGCCTTCTTACACCAATACTCCTCGCCTCGTTTACGTTGTCCAAGGTAGGGGTCATCTAGGAATGGTGATGCCCGGCTGTCCCGAGACATTTGAGGAGTCCGAGCAATCTGACGAGGAACAACAGGGCTCGCAACAACAACCACGGCAAGGCCGCCAGCAACAGGGACGCCGACAAGGACAATATGGACGAGAAGGCCAACAGGGAGAACAAGAGAGCTTCGAACAGCTAGACCGACACCAGAGGGTGCGACGCGTCAAGGAAGGTGACGTTATCGCCATCCCTGCCGGAGTCACAACCTGGTCCTACAACGACGGTGACCAATCTCTCATTTTTGTCAGTCTTCTAGACATCAGCAACAATCACAACCAGCTTGACCAAAACCCAAGGCGATTCTATCTTGCTGGTAACCCAAAAGATGAGTTCAACCAACAAGGCCAAAGCCGAGGCCAATCGAGACAACAACAAGAACAACAGGGAAGGAGCAGACGCCAACAACAGGGAAACAACAACAACAACATCTTTGCCGGATTCGACACCAGACTCCTCGCCGATGCTCTCAACATCGACCAACAGACCGCTCAGCAGCTCCAGGGACAGAACGACAACAGGCCACAGATTGTTAGGGTTCAGGGACGTCTCGACTTCATCCAGCCTCCTGAGTCAATGAGGGAGGAAAGACAACTCCAAGGACAACAGGGACAACAGGGACAGAATGGCTTTGAGGAGGTATTCTGCCACATGAAGATCAAGCAGAACATCGGCAAGCCTTCATTGGCAGACGTCTTCAGCCCGCAAGCCGGTCGCATCAGCACCCTCAACGGCTTCAGCATGCCTATTCTCAGGCACCTCCGTCTCAGTGCTGAGAGAGGCTTTTTGTACAACAATGCTATCCACAGCCCACACTGGAACTTGAATGCCCATGAGATAGTCTATGTCATCAGAGGTAGCGCCAGGGTTCAGGTGGTGAACGACAACGGCGAGACCATCTTGGACGACCAGGTCCGCCAGGGACAGCTCTTCGTCGTGCCACAGAACCACGCCGTGTTGCAGAAGGCCATGAGCAACGGATACGAGTACATTGCCTTCAAGACTGAGGACAATGCCATGATGAACACCATGGCAGGCAGGACCTCCGTTCTGCGGGCACTTCCCGACGTGGTCCTAGCCAACGCTTACCAGATGGACCGTGAGCAGGCAAGGAACCTCAAGTACAACAGGCAGGAGACCCTTGCCTTGAGCTCCTCAAGGTCTTTCCAGTCACAGAGGAGTTGGTGGGCTATTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

513

Amino Acids

58.56

Weight (kDa)

6.62

Isoelectric Point (pI)

62.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	41 - 222	1.5e-27	Cupin
Cupin_1	PF00190	337 - 484	2e-38	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1253
AatII	GACGTC	2 cut(s)	892, 1038
AccB1I	GGYRCC	1 cut(s)	1098
AccBSI	CCGCTC	2 cut(s)	90, 833
AccII	CGCG	2 cut(s)	129, 507
AciI	CCGC	9 cut(s)	90, 127, 142, 158, 406, 831, 1046, 1258, 1396
AclWI	GGATC	1 cut(s)	173
AcuI	CTGAAG	2 cut(s)	1024, 1063
AcyI	GRCGYC	4 cut(s)	421, 742, 889, 1035
AdeI	CACNNNGTG	1 cut(s)	1297
AfaI	GTAC	4 cut(s)	80, 1133, 1331, 1466
AfiI	CCNNNNNNNGG	8 cut(s)	121, 301, 401, 415, 751, 1052, 1395, 1447
AflIII	ACRYGT	1 cut(s)	505
AgsI	TTSAA	3 cut(s)	679, 1168, 1342
AjiI	CACGTC	1 cut(s)	1411
AjnI	CCWGG	7 cut(s)	120, 186, 551, 843, 1205, 1251, 1260
AloI	GAACNNNNNNTCC	2 cut(s)	201, 233
AluBI	AGCT	8 cut(s)	17, 118, 471, 481, 625, 841, 1270, 1494
AluI	AGCT	8 cut(s)	17, 118, 471, 481, 625, 841, 1270, 1494
Alw21I	GWGCWC	2 cut(s)	206, 1496
Alw26I	GTCTC	8 cut(s)	78, 143, 332, 703, 896, 1112, 1229, 1472
Alw44I	GTGCAC	1 cut(s)	202
AlwI	GGATC	1 cut(s)	173
Ama87I	CYCGRG	1 cut(s)	335
AoxI	GGCC	8 cut(s)	123, 244, 403, 448, 688, 700, 863, 1308
ApaLI	GTGCAC	1 cut(s)	202
ApeKI	GCWGC	2 cut(s)	51, 838
AspLEI	GCGC	2 cut(s)	240, 1205
AspS9I	GGNCC	6 cut(s)	124, 555, 1255, 1383, 1414, 1438
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	4 cut(s)	331, 530, 581, 1231
AsuII	TTCGAA	1 cut(s)	474
AvaI	CYCGRG	1 cut(s)	335
AvaII	GGWCC	5 cut(s)	555, 1255, 1383, 1414, 1438
BaeGI	GKGCMC	2 cut(s)	206, 1402
BanI	GGYRCC	1 cut(s)	1098
BanII	GRGCYC	3 cut(s)	135, 383, 1496
BarI	GAAGNNNNNNTAC	2 cut(s)	1322, 1354
BbsI	GAAGAC	2 cut(s)	587, 1030
Bbv12I	GWGCWC	2 cut(s)	206, 1496
BbvI	GCAGC	2 cut(s)	38, 850
BccI	CCATC	3 cut(s)	539, 1247, 1429
BceAI	ACGGC	6 cut(s)	200, 259, 413, 1090, 1246, 1280
BcgI	CGANNNNNNTGC	6 cut(s)	193, 227, 1037, 1071, 1316, 1350
BciT130I	CCWGG	7 cut(s)	122, 188, 553, 845, 1207, 1253, 1262
BciVI	GTATCC	1 cut(s)	1316
BcnI	CCSGG	1 cut(s)	327
BcoDI	GTCTC	8 cut(s)	78, 143, 332, 703, 896, 1112, 1229, 1472
BfaI	CTAG	5 cut(s)	6, 311, 482, 599, 1418
BfoI	RGCGCY	1 cut(s)	1206
BfuI	GTATCC	1 cut(s)	1316
BisI	GCNGC	3 cut(s)	52, 406, 839
BlpI	GCTNAGC	2 cut(s)	55, 834
BlsI	GCNGC	3 cut(s)	53, 407, 840
Bme1390I	CCNGG	8 cut(s)	122, 188, 327, 553, 845, 1207, 1253, 1262
Bme18I	GGWCC	5 cut(s)	555, 1255, 1383, 1414, 1438
BmeT110I	CYCGRG	1 cut(s)	335
BmgBI	CACGTC	1 cut(s)	1411
BmgT120I	GGNCC	6 cut(s)	124, 555, 1255, 1383, 1414, 1438
BmiI	GGNNCC	2 cut(s)	1100, 1457
BmrFI	CCNGG	8 cut(s)	122, 188, 327, 553, 845, 1207, 1253, 1262
BmsI	GCATC	3 cut(s)	312, 796, 1068
BpiI	GAAGAC	2 cut(s)	587, 1030
BpmI	CTGGAG	2 cut(s)	104, 827
Bpu1102I	GCTNAGC	2 cut(s)	55, 834
Bpu14I	TTCGAA	1 cut(s)	474
BpuEI	CTTGAG	3 cut(s)	1445, 1483, 1510
BpuMI	CCSGG	1 cut(s)	327
BsaHI	GRCGYC	4 cut(s)	421, 742, 889, 1035
BsaI	GGTCTC	2 cut(s)	1229, 1472
BsaJI	CCNNGG	9 cut(s)	295, 395, 638, 697, 844, 940, 1206, 1261, 1371
BsaWI	WCCGGW	1 cut(s)	206
BsaXI	ACNNNNNCTCC	4 cut(s)	201, 231, 256, 286
Bsc4I	CCNNNNNNNGG	8 cut(s)	121, 301, 401, 415, 751, 1052, 1395, 1447
Bse118I	RCCGGY	1 cut(s)	1052
Bse1I	ACTGG	3 cut(s)	199, 1163, 1510
Bse3DI	GCAATG	1 cut(s)	1332
BseBI	CCWGG	7 cut(s)	122, 188, 553, 845, 1207, 1253, 1262
BseDI	CCNNGG	9 cut(s)	295, 395, 638, 697, 844, 940, 1206, 1261, 1371
BseGI	GGATG	3 cut(s)	196, 531, 900
BseLI	CCNNNNNNNGG	8 cut(s)	121, 301, 401, 415, 751, 1052, 1395, 1447
BseMI	GCAATG	1 cut(s)	1332
BseMII	CTCAG	8 cut(s)	89, 144, 848, 903, 1107, 1108, 1123, 1338
BseNI	ACTGG	3 cut(s)	199, 1163, 1510
BseRI	GAGGAG	6 cut(s)	264, 362, 788, 992, 1486, 1534
BseSI	GKGCMC	2 cut(s)	206, 1402
BseXI	GCAGC	2 cut(s)	38, 850
Bsh1236I	CGCG	2 cut(s)	129, 507
Bsh1285I	CGRYCG	1 cut(s)	1057
BshFI	GGCC	8 cut(s)	125, 246, 405, 450, 690, 702, 865, 1310
BshNI	GGYRCC	1 cut(s)	1098
BsiEI	CGRYCG	1 cut(s)	1057
BsiHKAI	GWGCWC	2 cut(s)	206, 1496
BsiHKCI	CYCGRG	1 cut(s)	335
BsiSI	CCGG	5 cut(s)	207, 327, 540, 780, 1053
BslFI	GGGAC	8 cut(s)	191, 318, 432, 861, 900, 966, 975, 1278
BslI	CCNNNNNNNGG	8 cut(s)	121, 301, 401, 415, 751, 1052, 1395, 1447
BsmAI	GTCTC	8 cut(s)	78, 143, 332, 703, 896, 1112, 1229, 1472
BsmBI	CGTCTC	2 cut(s)	896, 1112
BsmFI	GGGAC	8 cut(s)	191, 318, 432, 861, 900, 966, 975, 1278
BsmI	GAATGC	1 cut(s)	1174
BsnI	GGCC	8 cut(s)	125, 246, 405, 450, 690, 702, 865, 1310
Bso31I	GGTCTC	2 cut(s)	1229, 1472
BsoBI	CYCGRG	1 cut(s)	335
Bsp119I	TTCGAA	1 cut(s)	474
Bsp1286I	GDGCHC	5 cut(s)	135, 206, 383, 1402, 1496
Bsp1407I	TGTACA	1 cut(s)	1131
Bsp143I	GATC	3 cut(s)	108, 165, 999
Bsp1720I	GCTNAGC	2 cut(s)	55, 834
Bsp19I	CCATGG	1 cut(s)	1371
BspACI	CCGC	9 cut(s)	90, 127, 142, 158, 406, 831, 1046, 1258, 1396
BspANI	GGCC	8 cut(s)	125, 246, 405, 450, 690, 702, 865, 1310
BspCNI	CTCAG	8 cut(s)	88, 145, 847, 904, 1107, 1108, 1122, 1339
BspFNI	CGCG	2 cut(s)	129, 507
BspLI	GGNNCC	2 cut(s)	1100, 1457
BspPI	GGATC	1 cut(s)	173
BspQI	GCTCTTC	1 cut(s)	1277
BspT104I	TTCGAA	1 cut(s)	474
BspT107I	GGYRCC	1 cut(s)	1098
BspTNI	GGTCTC	2 cut(s)	1229, 1472
BsrBI	CCGCTC	2 cut(s)	90, 833
BsrDI	GCAATG	1 cut(s)	1332
BsrFI	RCCGGY	1 cut(s)	1052
BsrGI	TGTACA	1 cut(s)	1131
BsrI	ACTGG	3 cut(s)	199, 1163, 1510
BssAI	RCCGGY	1 cut(s)	1052
BssECI	CCNNGG	9 cut(s)	295, 395, 638, 697, 844, 940, 1206, 1261, 1371
BssMI	GATC	3 cut(s)	108, 165, 999
BssNI	GRCGYC	4 cut(s)	421, 742, 889, 1035
BssT1I	CCWWGG	4 cut(s)	295, 638, 940, 1371
Bst2UI	CCWGG	7 cut(s)	122, 188, 553, 845, 1207, 1253, 1262
Bst4CI	ACNGT	3 cut(s)	72, 569, 1442
Bst6I	CTCTTC	1 cut(s)	1277
BstACI	GRCGYC	4 cut(s)	421, 742, 889, 1035
BstAUI	TGTACA	1 cut(s)	1131
BstBI	TTCGAA	1 cut(s)	474
BstDEI	CTNAG	9 cut(s)	55, 75, 153, 834, 912, 1094, 1109, 1116, 1347
BstDSI	CCRYGG	2 cut(s)	395, 1371
BstEII	GGTNACC	2 cut(s)	569, 659
BstF5I	GGATG	3 cut(s)	196, 531, 900
BstFNI	CGCG	2 cut(s)	129, 507
BstH2I	RGCGCY	1 cut(s)	1206
BstHHI	GCGC	2 cut(s)	240, 1205
BstKTI	GATC	3 cut(s)	111, 168, 1002
BstMAI	GTCTC	8 cut(s)	78, 143, 332, 703, 896, 1112, 1229, 1472
BstMBI	GATC	3 cut(s)	108, 165, 999
BstMCI	CGRYCG	1 cut(s)	1057
BstMWI	GCNNNNNNNGC	1 cut(s)	536
BstNI	CCWGG	7 cut(s)	122, 188, 553, 845, 1207, 1253, 1262
BstNSI	RCATGY	1 cut(s)	1087
BstPI	GGTNACC	2 cut(s)	569, 659
BstSCI	CCNGG	8 cut(s)	120, 186, 325, 551, 843, 1205, 1251, 1260
BstSLI	GKGCMC	2 cut(s)	206, 1402
BstUI	CGCG	2 cut(s)	129, 507
BstV1I	GCAGC	2 cut(s)	38, 850
BstV2I	GAAGAC	2 cut(s)	587, 1030
BsuI	GTATCC	1 cut(s)	1316
BsuRI	GGCC	8 cut(s)	125, 246, 405, 450, 690, 702, 865, 1310
BtgI	CCRYGG	2 cut(s)	395, 1371
BtrI	CACGTC	1 cut(s)	1411
BtsCI	GGATG	3 cut(s)	196, 531, 900
BtsIMutI	CAGTG	3 cut(s)	206, 1117, 1156
CfoI	GCGC	2 cut(s)	240, 1205
Cfr10I	RCCGGY	1 cut(s)	1052
Cfr13I	GGNCC	6 cut(s)	124, 555, 1255, 1383, 1414, 1438
CseI	GACGC	4 cut(s)	429, 496, 513, 750
CsiI	ACCWGGT	2 cut(s)	551, 1251
Csp6I	GTAC	4 cut(s)	79, 1132, 1330, 1465
CviAII	CATG	8 cut(s)	47, 174, 994, 1084, 1175, 1312, 1360, 1372
CviQI	GTAC	4 cut(s)	79, 1132, 1330, 1465
DdeI	CTNAG	9 cut(s)	55, 75, 153, 834, 912, 1094, 1109, 1116, 1347
DpnI	GATC	3 cut(s)	110, 167, 1001
DpnII	GATC	3 cut(s)	108, 165, 999
DraIII	CACNNNGTG	1 cut(s)	1297
DrdI	GACNNNNNNGTC	1 cut(s)	1253
DseDI	GACNNNNNNGTC	1 cut(s)	1253
Eam1104I	CTCTTC	1 cut(s)	1277
EarI	CTCTTC	1 cut(s)	1277
EciI	GGCGGA	1 cut(s)	1247
Ecl136II	GAGCTC	1 cut(s)	1494
Eco130I	CCWWGG	4 cut(s)	295, 638, 940, 1371
Eco24I	GRGCYC	3 cut(s)	135, 383, 1496
Eco31I	GGTCTC	2 cut(s)	1229, 1472
Eco47I	GGWCC	5 cut(s)	555, 1255, 1383, 1414, 1438
Eco53kI	GAGCTC	1 cut(s)	1494
Eco57I	CTGAAG	2 cut(s)	1024, 1063
Eco88I	CYCGRG	1 cut(s)	335
Eco91I	GGTNACC	2 cut(s)	569, 659
EcoICRI	GAGCTC	1 cut(s)	1494
EcoO109I	RGGNCCY	1 cut(s)	1383
EcoO65I	GGTNACC	2 cut(s)	569, 659
EcoRII	CCWGG	7 cut(s)	120, 186, 551, 843, 1205, 1251, 1260
EcoT14I	CCWWGG	4 cut(s)	295, 638, 940, 1371
EcoT38I	GRGCYC	3 cut(s)	135, 383, 1496
ErhI	CCWWGG	4 cut(s)	295, 638, 940, 1371
Esp3I	CGTCTC	2 cut(s)	896, 1112
FaeI	CATG	8 cut(s)	50, 177, 997, 1087, 1178, 1315, 1363, 1375
FaqI	GGGAC	8 cut(s)	191, 318, 432, 861, 900, 966, 975, 1278
FatI	CATG	8 cut(s)	46, 173, 993, 1083, 1174, 1311, 1359, 1371
FauI	CCCGC	5 cut(s)	83, 134, 151, 1053, 1389
Fnu4HI	GCNGC	3 cut(s)	52, 406, 839
FokI	GGATG	3 cut(s)	203, 518, 887
FriOI	GRGCYC	3 cut(s)	135, 383, 1496
Fsp4HI	GCNGC	3 cut(s)	52, 406, 839
FspBI	CTAG	5 cut(s)	6, 311, 482, 599, 1418
GlaI	GCGC	2 cut(s)	239, 1204
GluI	GCNGC	3 cut(s)	52, 406, 839
GsuI	CTGGAG	2 cut(s)	104, 827
HaeII	RGCGCY	1 cut(s)	1206
HaeIII	GGCC	8 cut(s)	125, 246, 405, 450, 690, 702, 865, 1310
HapII	CCGG	5 cut(s)	207, 327, 540, 780, 1053
HgaI	GACGC	4 cut(s)	429, 496, 513, 750
HhaI	GCGC	2 cut(s)	240, 1205
Hin1I	GRCGYC	4 cut(s)	421, 742, 889, 1035
Hin1II	CATG	8 cut(s)	50, 177, 997, 1087, 1178, 1315, 1363, 1375
Hin6I	GCGC	2 cut(s)	238, 1203
HinP1I	GCGC	2 cut(s)	238, 1203
HinfI	GANTC	9 cut(s)	170, 210, 225, 350, 543, 645, 783, 795, 914
HpaII	CCGG	5 cut(s)	207, 327, 540, 780, 1053
HphI	GGTGA	4 cut(s)	331, 530, 581, 1231
Hpy166II	GTNNAC	3 cut(s)	204, 286, 1222
Hpy188I	TCNGA	5 cut(s)	165, 222, 355, 364, 1196
Hpy188III	TCNNGA	7 cut(s)	335, 599, 708, 893, 911, 1342, 1406
Hpy8I	GTNNAC	3 cut(s)	204, 286, 1222
Hpy99I	CGWCG	5 cut(s)	236, 507, 569, 1280, 1412
HpyAV	CCTTC	8 cut(s)	257, 267, 440, 509, 726, 1032, 1300, 1348
HpyCH4III	ACNGT	3 cut(s)	72, 569, 1442
HpyCH4IV	ACGT	5 cut(s)	288, 522, 889, 1035, 1410
HpyCH4V	TGCA	2 cut(s)	204, 1303
HpyF10VI	GCNNNNNNNGC	1 cut(s)	536
HpyF3I	CTNAG	9 cut(s)	55, 75, 153, 834, 912, 1094, 1109, 1116, 1347
HpySE526I	ACGT	5 cut(s)	288, 522, 889, 1035, 1410
Hsp92I	GRCGYC	4 cut(s)	421, 742, 889, 1035
Hsp92II	CATG	8 cut(s)	50, 177, 997, 1087, 1178, 1315, 1363, 1375
HspAI	GCGC	2 cut(s)	238, 1203
Kzo9I	GATC	3 cut(s)	108, 165, 999
LguI	GCTCTTC	1 cut(s)	1277
LmnI	GCTCC	4 cut(s)	123, 735, 846, 1499
Lsp1109I	GCAGC	2 cut(s)	38, 850
LweI	GCATC	3 cut(s)	312, 796, 1068
MabI	ACCWGGT	2 cut(s)	551, 1251
MaeI	CTAG	5 cut(s)	6, 311, 482, 599, 1418
MaeII	ACGT	5 cut(s)	288, 522, 889, 1035, 1410
MaeIII	GTNAC	5 cut(s)	518, 544, 569, 659, 1512
MalI	GATC	3 cut(s)	110, 167, 1001
MbiI	CCGCTC	2 cut(s)	90, 833
MboI	GATC	3 cut(s)	108, 165, 999
MboII	GAAGA	4 cut(s)	587, 1009, 1030, 1264
MhlI	GDGCHC	5 cut(s)	135, 206, 383, 1402, 1496
MluI	ACGCGT	1 cut(s)	505
MlyI	GAGTC	6 cut(s)	179, 219, 359, 552, 789, 923
MmeI	TCCRAC	1 cut(s)	143
MseI	TTAA	1 cut(s)	1540
MspI	CCGG	5 cut(s)	207, 327, 540, 780, 1053
MspR9I	CCNGG	8 cut(s)	122, 188, 327, 553, 845, 1207, 1253, 1262
Mva1269I	GAATGC	1 cut(s)	1174
MvaI	CCWGG	7 cut(s)	122, 188, 553, 845, 1207, 1253, 1262
MvnI	CGCG	2 cut(s)	129, 507
MwoI	GCNNNNNNNGC	1 cut(s)	536
NciI	CCSGG	1 cut(s)	327
NcoI	CCATGG	1 cut(s)	1371
NdeII	GATC	3 cut(s)	108, 165, 999
NlaIII	CATG	8 cut(s)	50, 177, 997, 1087, 1178, 1315, 1363, 1375
NlaIV	GGNNCC	2 cut(s)	1100, 1457
NmeAIII	GCCGAG	1 cut(s)	722
NmuCI	GTSAC	4 cut(s)	518, 544, 569, 1512
NspI	RCATGY	1 cut(s)	1087
NspV	TTCGAA	1 cut(s)	474
PaeI	GCATGC	1 cut(s)	1087
PciSI	GCTCTTC	1 cut(s)	1277
PcsI	WCGNNNNNNNCGW	1 cut(s)	1230
PctI	GAATGC	1 cut(s)	1174
PfeI	GAWTC	3 cut(s)	225, 645, 783
PflFI	GACNNNGTC	2 cut(s)	1253, 1412
PkrI	GCNGC	3 cut(s)	53, 407, 840
PleI	GAGTC	6 cut(s)	178, 218, 358, 551, 789, 922
PpsI	GAGTC	6 cut(s)	178, 218, 358, 551, 789, 922
PpuMI	RGGWCCY	1 cut(s)	1383
Psp124BI	GAGCTC	1 cut(s)	1496
Psp5II	RGGWCCY	1 cut(s)	1383
Psp6I	CCWGG	7 cut(s)	120, 186, 551, 843, 1205, 1251, 1260
PspEI	GGTNACC	2 cut(s)	569, 659
PspGI	CCWGG	7 cut(s)	120, 186, 551, 843, 1205, 1251, 1260
PspN4I	GGNNCC	2 cut(s)	1100, 1457
PspPI	GGNCC	6 cut(s)	124, 555, 1255, 1383, 1414, 1438
PspPPI	RGGWCCY	1 cut(s)	1383
PsrI	GAACNNNNNNTAC	2 cut(s)	1448, 1480
PsyI	GACNNNGTC	2 cut(s)	1253, 1412
RsaI	GTAC	4 cut(s)	80, 1133, 1331, 1466
RsaNI	GTAC	4 cut(s)	79, 1132, 1330, 1465
SacI	GAGCTC	1 cut(s)	1496
SapI	GCTCTTC	1 cut(s)	1277
SaqAI	TTAA	1 cut(s)	1540
SatI	GCNGC	3 cut(s)	52, 406, 839
Sau3AI	GATC	3 cut(s)	108, 165, 999
Sau96I	GGNCC	6 cut(s)	124, 555, 1255, 1383, 1414, 1438
SchI	GAGTC	6 cut(s)	179, 219, 359, 552, 789, 923
ScrFI	CCNGG	8 cut(s)	122, 188, 327, 553, 845, 1207, 1253, 1262
SduI	GDGCHC	5 cut(s)	135, 206, 383, 1402, 1496
SexAI	ACCWGGT	2 cut(s)	551, 1251
SfaNI	GCATC	3 cut(s)	312, 796, 1068
SfuI	TTCGAA	1 cut(s)	474
SinI	GGWCC	5 cut(s)	555, 1255, 1383, 1414, 1438
SmlI	CTYRAG	3 cut(s)	1460, 1489, 1498
SmoI	CTYRAG	3 cut(s)	1460, 1489, 1498
SphI	GCATGC	1 cut(s)	1087
SsiI	CCGC	9 cut(s)	90, 127, 142, 158, 406, 831, 1046, 1258, 1396
SspMI	CTAG	5 cut(s)	6, 311, 482, 599, 1418
SstI	GAGCTC	1 cut(s)	1496
StyD4I	CCNGG	8 cut(s)	120, 186, 325, 551, 843, 1205, 1251, 1260
StyI	CCWWGG	4 cut(s)	295, 638, 940, 1371
TaaI	ACNGT	3 cut(s)	72, 569, 1442
TaiI	ACGT	5 cut(s)	291, 525, 892, 1038, 1413
TaqI	TCGA	7 cut(s)	168, 234, 474, 707, 786, 819, 894
TaqII	GACCGA	1 cut(s)	501
TatI	WGTACW	4 cut(s)	78, 1131, 1329, 1464
TauI	GCSGC	1 cut(s)	408
TfiI	GAWTC	3 cut(s)	225, 645, 783
Tru1I	TTAA	1 cut(s)	1540
Tru9I	TTAA	1 cut(s)	1540
TscAI	CASTG	3 cut(s)	206, 1117, 1163
TseFI	GTSAC	4 cut(s)	518, 544, 569, 1512
TseI	GCWGC	2 cut(s)	51, 838
Tsp45I	GTSAC	4 cut(s)	518, 544, 569, 1512
TspDTI	ATGAA	5 cut(s)	35, 889, 1010, 1014, 1379
TspGWI	ACGGA	3 cut(s)	1094, 1335, 1378
TspRI	CASTG	3 cut(s)	206, 1117, 1163
Tth111I	GACNNNGTC	2 cut(s)	1253, 1412
VneI	GTGCAC	1 cut(s)	202
VpaK11BI	GGWCC	5 cut(s)	555, 1255, 1383, 1414, 1438
XbaI	TCTAGA	1 cut(s)	598
XceI	RCATGY	1 cut(s)	1087
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1213
XspI	CTAG	5 cut(s)	6, 311, 482, 599, 1418
ZraI	GACGTC	2 cut(s)	890, 1036

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.