Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Forward (+)

50262679 .. 50263284

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG304100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGCAGAATGCTATCTACAGCCCACACTGGAACTTGAACGCCCACGAAGTGTACTACGTCATTCGAGGTAGCGCTAGGGTTCAGGTTGTGAACGACAACGGCCAGGCCATCTTGGACAACGAAGTCCGCCAGGGACAGCTCTTCATTGTGCCACAGAACCACGCAGTGTTACAAAAGGCTAGCAACAACGGCTACGAGTACATTGCCTTCAAGACCCAGGACAATGCCAAGATTAACACTCTGGCAGGCCGGACCTCAGTCTTGCGGGCACTCCCCGACGTCGTCCTTGCTAACGCATACCAGATTGACCGACAACAGGCAAGGAATCTCAAATACAACAGACAGGAGACTGTTGCTTTGAGCTCTTCAAGGTCTTCCCAATCCCAGAGGAGCTGGTGGGCTATTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

136

Amino Acids

15.42

Weight (kDa)

9.75

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	2 - 107	1.3e-31	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	122
AatII	GACGTC	1 cut(s)	282
AciI	CCGC	2 cut(s)	127, 265
AcoI	YGGCCR	1 cut(s)	100
AcyI	GRCGYC	1 cut(s)	279
AdeI	CACNNNGTG	2 cut(s)	49, 166
AfaI	GTAC	2 cut(s)	53, 200
AfeI	AGCGCT	1 cut(s)	73
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgsI	TTSAA	3 cut(s)	37, 211, 369
AjnI	CCWGG	3 cut(s)	102, 129, 216
AluBI	AGCT	3 cut(s)	139, 363, 393
AluI	AGCT	3 cut(s)	139, 363, 393
Alw21I	GWGCWC	1 cut(s)	365
Alw26I	GTCTC	1 cut(s)	341
Aor51HI	AGCGCT	1 cut(s)	73
AoxI	GGCC	3 cut(s)	100, 105, 247
ArsI	GACNNNNNNTTYG	2 cut(s)	340, 372
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	252
AsuNHI	GCTAGC	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	252
BaeGI	GKGCMC	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	365
BarI	GAAGNNNNNNTAC	2 cut(s)	191, 223
BbsI	GAAGAC	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	365
BccI	CCATC	1 cut(s)	116
BceAI	ACGGC	2 cut(s)	115, 205
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BciT130I	CCWGG	3 cut(s)	104, 131, 218
BcoDI	GTCTC	1 cut(s)	341
BfaI	CTAG	2 cut(s)	75, 180
BfmI	CTRYAG	1 cut(s)	16
BfoI	RGCGCY	1 cut(s)	75
Bme1390I	CCNGG	3 cut(s)	104, 131, 218
Bme18I	GGWCC	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	252
BmrFI	CCNGG	3 cut(s)	104, 131, 218
BmtI	GCTAGC	1 cut(s)	183
BoxI	GACNNNNGTC	1 cut(s)	257
BpiI	GAAGAC	1 cut(s)	366
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	130, 216
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse1I	ACTGG	1 cut(s)	32
Bse3DI	GCAATG	1 cut(s)	201
BseBI	CCWGG	3 cut(s)	104, 131, 218
BseDI	CCNNGG	2 cut(s)	130, 216
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	32
BseRI	GAGGAG	1 cut(s)	403
BseSI	GKGCMC	1 cut(s)	271
BshFI	GGCC	3 cut(s)	102, 107, 249
BsiHKAI	GWGCWC	1 cut(s)	365
BsiSI	CCGG	1 cut(s)	250
BslFI	GGGAC	1 cut(s)	147
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	1 cut(s)	341
BsmFI	GGGAC	1 cut(s)	147
BsmI	GAATGC	1 cut(s)	13
BsnI	GGCC	3 cut(s)	102, 107, 249
Bsp1286I	GDGCHC	2 cut(s)	271, 365
BspACI	CCGC	2 cut(s)	127, 265
BspANI	GGCC	3 cut(s)	102, 107, 249
BspCNI	CTCAG	1 cut(s)	269
BspOI	GCTAGC	1 cut(s)	183
BspQI	GCTCTTC	2 cut(s)	146, 370
BsrDI	GCAATG	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	32
BssECI	CCNNGG	2 cut(s)	130, 216
BssNI	GRCGYC	1 cut(s)	279
Bst2UI	CCWGG	3 cut(s)	104, 131, 218
Bst4CI	ACNGT	1 cut(s)	352
Bst6I	CTCTTC	2 cut(s)	146, 370
BstACI	GRCGYC	1 cut(s)	279
BstC8I	GCNNGC	3 cut(s)	181, 247, 267
BstDEI	CTNAG	1 cut(s)	256
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	74
BstMAI	GTCTC	1 cut(s)	341
BstMWI	GCNNNNNNNGC	1 cut(s)	189
BstNI	CCWGG	3 cut(s)	104, 131, 218
BstPAI	GACNNNNGTC	1 cut(s)	257
BstSCI	CCNGG	3 cut(s)	102, 129, 216
BstSFI	CTRYAG	1 cut(s)	16
BstSLI	GKGCMC	1 cut(s)	271
BstV2I	GAAGAC	1 cut(s)	366
BsuRI	GGCC	3 cut(s)	102, 107, 249
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	2 cut(s)	25, 171
Cac8I	GCNNGC	3 cut(s)	181, 247, 267
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	252
Csp6I	GTAC	2 cut(s)	52, 199
CviQI	GTAC	2 cut(s)	52, 199
DdeI	CTNAG	1 cut(s)	256
DraIII	CACNNNGTG	2 cut(s)	49, 166
DrdI	GACNNNNNNGTC	1 cut(s)	122
DseDI	GACNNNNNNGTC	1 cut(s)	122
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	2 cut(s)	146, 370
EarI	CTCTTC	2 cut(s)	146, 370
EciI	GGCGGA	1 cut(s)	116
Ecl136II	GAGCTC	1 cut(s)	363
Eco24I	GRGCYC	1 cut(s)	365
Eco47I	GGWCC	1 cut(s)	252
Eco47III	AGCGCT	1 cut(s)	73
Eco53kI	GAGCTC	1 cut(s)	363
EcoICRI	GAGCTC	1 cut(s)	363
EcoRII	CCWGG	3 cut(s)	102, 129, 216
EcoT38I	GRGCYC	1 cut(s)	365
FaiI	YATR	2 cut(s)	298, 409
FaqI	GGGAC	1 cut(s)	147
FauI	CCCGC	1 cut(s)	258
FriOI	GRGCYC	1 cut(s)	365
FspBI	CTAG	2 cut(s)	75, 180
GlaI	GCGC	1 cut(s)	73
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	3 cut(s)	102, 107, 249
HapII	CCGG	1 cut(s)	250
HhaI	GCGC	1 cut(s)	74
Hin1I	GRCGYC	1 cut(s)	279
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HinfI	GANTC	1 cut(s)	325
HpaII	CCGG	1 cut(s)	250
Hpy166II	GTNNAC	2 cut(s)	52, 91
Hpy188III	TCNNGA	1 cut(s)	211
Hpy8I	GTNNAC	2 cut(s)	52, 91
Hpy99I	CGWCG	2 cut(s)	281, 284
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4IV	ACGT	2 cut(s)	57, 279
HpyCH4V	TGCA	2 cut(s)	4, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	189
HpyF3I	CTNAG	1 cut(s)	256
HpySE526I	ACGT	2 cut(s)	57, 279
Hsp92I	GRCGYC	1 cut(s)	279
HspAI	GCGC	1 cut(s)	72
LguI	GCTCTTC	2 cut(s)	146, 370
LmnI	GCTCC	1 cut(s)	390
MaeI	CTAG	2 cut(s)	75, 180
MaeII	ACGT	2 cut(s)	57, 279
MaeIII	GTNAC	1 cut(s)	168
MboII	GAAGA	3 cut(s)	133, 357, 366
MhlI	GDGCHC	2 cut(s)	271, 365
MnlI	CCTC	3 cut(s)	59, 265, 381
MseI	TTAA	1 cut(s)	234
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	3 cut(s)	104, 131, 218
Mva1269I	GAATGC	1 cut(s)	13
MvaI	CCWGG	3 cut(s)	104, 131, 218
MwoI	GCNNNNNNNGC	1 cut(s)	189
NheI	GCTAGC	1 cut(s)	179
PciSI	GCTCTTC	2 cut(s)	146, 370
PctI	GAATGC	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	325
PflFI	GACNNNGTC	1 cut(s)	281
PshAI	GACNNNNGTC	1 cut(s)	257
Psp124BI	GAGCTC	1 cut(s)	365
Psp6I	CCWGG	3 cut(s)	102, 129, 216
PspGI	CCWGG	3 cut(s)	102, 129, 216
PspPI	GGNCC	1 cut(s)	252
PsyI	GACNNNGTC	1 cut(s)	281
RsaI	GTAC	2 cut(s)	53, 200
RsaNI	GTAC	2 cut(s)	52, 199
SacI	GAGCTC	1 cut(s)	365
SapI	GCTCTTC	2 cut(s)	146, 370
SaqAI	TTAA	1 cut(s)	234
Sau96I	GGNCC	1 cut(s)	252
ScrFI	CCNGG	3 cut(s)	104, 131, 218
SduI	GDGCHC	2 cut(s)	271, 365
SetI	ASST	9 cut(s)	60, 70, 87, 141, 257, 282, 365, 374, 395
SfcI	CTRYAG	1 cut(s)	16
SinI	GGWCC	1 cut(s)	252
SsiI	CCGC	2 cut(s)	127, 265
SspMI	CTAG	2 cut(s)	75, 180
SstI	GAGCTC	1 cut(s)	365
StyD4I	CCNGG	3 cut(s)	102, 129, 216
TaaI	ACNGT	1 cut(s)	352
TaiI	ACGT	2 cut(s)	60, 282
TaqI	TCGA	1 cut(s)	64
TaqII	GACCGA	1 cut(s)	324
TatI	WGTACW	2 cut(s)	51, 198
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	2 cut(s)	32, 171
TspDTI	ATGAA	1 cut(s)	133
TspRI	CASTG	2 cut(s)	32, 171
Tth111I	GACNNNGTC	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	252
XspI	CTAG	2 cut(s)	75, 180
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.