Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Reverse (-)

19883895 .. 19885914

Gene Structure 2020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00180530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGGCTAAGCCGTTACAGCTTGCTATTCCTCTTTGTCTGGTACTACTTAGTTTCCTCTTTCACCATGAATGCTTAGCAGCTCGCCCGCAATTTGAATCCAACCTGCAAAATGAGTGCCAAATCGATCAGCTCCAAGCGCGCGAACCTGATATTCAGATCGACTGTGAAGCTGGTAGGATTGAGTCTTGGGATCACTACCAGAATGATTTCCGGTGCGCCGGCGTTGCGGCTCAACTAGTCACCATTGAACCCAATGGCCTACACTTGCCTTCTTACACACATTCTCCTCAACTTATGTACATCGTCAAAGGTTGGGGTGTGATGATGACTGCATTGCCTGGCTGTCCTGAGACTTTCGAATTGTCTCAAGGTTCTCAACAAGGACAAGAAGAGGGGCAAGGCTTCGACGATTTAGAACGCCATCAGAAGGTTCGGCTCATCGGAGAGGGTGACATCATTGCTATTCCTCCTGGGATTGTCCACTGGGTGCACAACAATGGTAATTCACCCCTTGTTGCCGTTAGTCTTCTCGACACTGGCAACGACCTTAACCAGCTTGACCGAAACCCCAGGAGGTTCTATCTTGCGGGTAACCCAGAAGATGAGTTTAACCAGCACGAAGGAGAAGGCATAAGTCAGCAGAGACGCCATTCGGGTCAGGGATCAAACAACAATAACATCTTCGCAGGCTTTGACGCTAGCCTCCTTGCAGACGCTCTCAATGTAGACATTGAAACTGCCATGAAAGTTCAAGGCCAGAATGATCAAACACGAAGCCAAATCGTGAGAGTGGAGGGAAAATTTGGTTTCCTCCACCCACCAATTAGGTCATCACAAGCGCAGCGAACCCAACAGGAACAACAAGATGAGCAGCAGGGACAGCAGGGAAGGCATGACAATGGTCTTGGGGAGACATTGTGCAATATTGCCCTAAATGAGTACCTTGGTGACCCTAGACGTGCGGACATTTACACGCCACAAGCTGGTCGCATCAATATCCTCAACAGCAATGATATGCCTATCCTTAAGCAAATCCCACATTGGAACCTCTTTGCACATGAAATATTCTACGTGATCAGAGGAAGTGCTAGAGTACAGGTGGTAAATGACAATGGCGAGGCCATATTGGACGATGAGGTCCGCGAGGGTCAGTTGTTTATAGTCCCGCATAACCACGCAGTCTTGCAGAAGGCTGTTGACAATCAGGGATTCGAATACATTGCATTCAAGACGCAGGACAATGCGGTCATCAACACTATGGCTGGCCGGACCTCGGTCTTGAGGGCACTGCCGGATAATGTGCTTGCAAATGCGTATCAAATTTCTCAAGAAGAGGCCAAGATGCTGAAGTACAAGAGGCAGGAGACTGTTGTATTGAGCTCATCAAGTTCCTCATATAGTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

468

Amino Acids

52.32

Weight (kDa)

5.1

Isoelectric Point (pI)

50.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	46 - 200	2.4e-24	Cupin
Cupin_1	PF00190	346 - 447	6.7e-28	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1136, 1244
Acc36I	ACCTGC	1 cut(s)	111
AccB7I	CCANNNNNTGG	1 cut(s)	983
AccI	GTMKAC	1 cut(s)	726
AccII	CGCG	3 cut(s)	139, 141, 1143
AciI	CCGC	7 cut(s)	86, 227, 587, 962, 1141, 1166, 1244
AclWI	GGATC	2 cut(s)	198, 670
AcoI	YGGCCR	1 cut(s)	1264
AcsI	RAATTY	2 cut(s)	800, 1320
AcuI	CTGAAG	1 cut(s)	1367
AcyI	GRCGYC	1 cut(s)	646
AdeI	CACNNNGTG	1 cut(s)	487
AfaI	GTAC	5 cut(s)	42, 299, 941, 1095, 1352
AfiI	CCNNNNNNNGG	3 cut(s)	427, 983, 1273
AflII	CTTAAG	1 cut(s)	1025
AgsI	TTSAA	5 cut(s)	95, 248, 734, 752, 1228
AhlI	ACTAGT	1 cut(s)	235
AjiI	CACGTC	1 cut(s)	959
AjnI	CCWGG	3 cut(s)	337, 469, 569
AluBI	AGCT	7 cut(s)	19, 80, 130, 170, 556, 983, 1380
AluI	AGCT	7 cut(s)	19, 80, 130, 170, 556, 983, 1380
Alw21I	GWGCWC	2 cut(s)	492, 1382
Alw26I	GTCTC	5 cut(s)	344, 369, 637, 905, 1358
Alw44I	GTGCAC	1 cut(s)	488
AlwI	GGATC	2 cut(s)	198, 670
AoxI	GGCC	5 cut(s)	256, 754, 1119, 1264, 1335
ApaLI	GTGCAC	1 cut(s)	488
ApeKI	GCWGC	3 cut(s)	77, 841, 871
ApoI	RAATTY	2 cut(s)	800, 1320
Asp700I	GAANNNNTTC	1 cut(s)	206
AspLEI	GCGC	4 cut(s)	139, 141, 218, 841
AspS9I	GGNCC	2 cut(s)	1138, 1269
AsuHPI	GGTGA	5 cut(s)	53, 232, 461, 498, 959
AsuII	TTCGAA	2 cut(s)	357, 1212
AsuNHI	GCTAGC	1 cut(s)	698
AvaII	GGWCC	2 cut(s)	1138, 1269
BaeGI	GKGCMC	2 cut(s)	492, 1288
BanII	GRGCYC	1 cut(s)	1382
BbsI	GAAGAC	1 cut(s)	518
Bbv12I	GWGCWC	2 cut(s)	492, 1382
BbvI	GCAGC	3 cut(s)	89, 853, 883
BccI	CCATC	1 cut(s)	429
BceAI	ACGGC	1 cut(s)	503
BcgI	CGANNNNNNTGC	2 cut(s)	1202, 1236
BciT130I	CCWGG	3 cut(s)	339, 471, 571
BclI	TGATCA	2 cut(s)	763, 1074
BcoDI	GTCTC	5 cut(s)	344, 369, 637, 905, 1358
BcuI	ACTAGT	1 cut(s)	235
BfaI	CTAG	4 cut(s)	236, 699, 954, 1089
BfrI	CTTAAG	1 cut(s)	1025
BfuAI	ACCTGC	1 cut(s)	111
BisI	GCNGC	4 cut(s)	78, 228, 842, 872
BlpI	GCTNAGC	2 cut(s)	6, 73
BlsI	GCNGC	4 cut(s)	79, 229, 843, 873
Bme1390I	CCNGG	3 cut(s)	339, 471, 571
Bme18I	GGWCC	2 cut(s)	1138, 1269
BmgBI	CACGTC	1 cut(s)	959
BmgT120I	GGNCC	2 cut(s)	1138, 1269
BmiI	GGNNCC	1 cut(s)	1046
BmrFI	CCNGG	3 cut(s)	339, 471, 571
BmrI	ACTGGG	1 cut(s)	493
BmsI	GCATC	2 cut(s)	999, 1332
BmtI	GCTAGC	1 cut(s)	702
BmuI	ACTGGG	1 cut(s)	493
BoxI	GACNNNNGTC	2 cut(s)	900, 1274
BpiI	GAAGAC	1 cut(s)	518
Bpu1102I	GCTNAGC	2 cut(s)	6, 73
Bpu14I	TTCGAA	2 cut(s)	357, 1212
BpuEI	CTTGAG	3 cut(s)	351, 1300, 1311
Bsa29I	ATCGAT	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	1072
BsaHI	GRCGYC	1 cut(s)	646
BsaJI	CCNNGG	4 cut(s)	470, 569, 943, 1272
BsaWI	WCCGGW	1 cut(s)	210
BsaXI	ACNNNNNCTCC	4 cut(s)	268, 298, 902, 932
Bsc4I	CCNNNNNNNGG	3 cut(s)	427, 983, 1273
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	2 cut(s)	488, 541
Bse3DI	GCAATG	4 cut(s)	332, 456, 1015, 1218
BseBI	CCWGG	3 cut(s)	339, 471, 571
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	4 cut(s)	470, 569, 943, 1272
BseLI	CCNNNNNNNGG	3 cut(s)	427, 983, 1273
BseMI	GCAATG	4 cut(s)	332, 456, 1015, 1218
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	2 cut(s)	488, 541
BsePI	GCGCGC	1 cut(s)	137
BseRI	GAGGAG	1 cut(s)	276
BseSI	GKGCMC	2 cut(s)	492, 1288
BseXI	GCAGC	3 cut(s)	89, 853, 883
Bsh1236I	CGCG	3 cut(s)	139, 141, 1143
BshFI	GGCC	5 cut(s)	258, 756, 1121, 1266, 1337
BshVI	ATCGAT	1 cut(s)	123
BsiHKAI	GWGCWC	2 cut(s)	492, 1382
BsiSI	CCGG	4 cut(s)	211, 219, 1267, 1292
BslFI	GGGAC	2 cut(s)	891, 1148
BslI	CCNNNNNNNGG	3 cut(s)	427, 983, 1273
BsmAI	GTCTC	5 cut(s)	344, 369, 637, 905, 1358
BsmBI	CGTCTC	1 cut(s)	637
BsmFI	GGGAC	2 cut(s)	891, 1148
BsmI	GAATGC	2 cut(s)	74, 1223
BsnI	GGCC	5 cut(s)	258, 756, 1121, 1266, 1337
Bsp119I	TTCGAA	2 cut(s)	357, 1212
Bsp1286I	GDGCHC	3 cut(s)	492, 1288, 1382
Bsp1407I	TGTACA	1 cut(s)	297
Bsp143I	GATC	6 cut(s)	124, 156, 190, 662, 763, 1074
Bsp1720I	GCTNAGC	2 cut(s)	6, 73
BspACI	CCGC	7 cut(s)	86, 227, 587, 962, 1141, 1166, 1244
BspANI	GGCC	5 cut(s)	258, 756, 1121, 1266, 1337
BspCNI	CTCAG	1 cut(s)	340
BspDI	ATCGAT	1 cut(s)	123
BspFNI	CGCG	3 cut(s)	139, 141, 1143
BspLI	GGNNCC	1 cut(s)	1046
BspMI	ACCTGC	1 cut(s)	111
BspOI	GCTAGC	1 cut(s)	702
BspPI	GGATC	2 cut(s)	198, 670
BspT104I	TTCGAA	2 cut(s)	357, 1212
BspTI	CTTAAG	1 cut(s)	1025
BsrDI	GCAATG	4 cut(s)	332, 456, 1015, 1218
BsrFI	RCCGGY	1 cut(s)	218
BsrGI	TGTACA	1 cut(s)	297
BsrI	ACTGG	2 cut(s)	488, 541
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	4 cut(s)	470, 569, 943, 1272
BssHII	GCGCGC	1 cut(s)	137
BssMI	GATC	6 cut(s)	124, 156, 190, 662, 763, 1074
BssNI	GRCGYC	1 cut(s)	646
BssT1I	CCWWGG	1 cut(s)	943
Bst2UI	CCWGG	3 cut(s)	339, 471, 571
Bst4CI	ACNGT	2 cut(s)	164, 1369
Bst6I	CTCTTC	2 cut(s)	384, 1326
BstACI	GRCGYC	1 cut(s)	646
BstAFI	CTTAAG	1 cut(s)	1025
BstAUI	TGTACA	1 cut(s)	297
BstBAI	YACGTR	1 cut(s)	1072
BstBI	TTCGAA	2 cut(s)	357, 1212
BstC8I	GCNNGC	9 cut(s)	21, 82, 86, 139, 220, 688, 700, 1264, 1305
BstDEI	CTNAG	4 cut(s)	6, 47, 73, 348
BstEII	GGTNACC	2 cut(s)	590, 947
BstFNI	CGCG	3 cut(s)	139, 141, 1143
BstHHI	GCGC	4 cut(s)	139, 141, 218, 841
BstKTI	GATC	6 cut(s)	127, 159, 193, 665, 766, 1077
BstMAI	GTCTC	5 cut(s)	344, 369, 637, 905, 1358
BstMBI	GATC	6 cut(s)	124, 156, 190, 662, 763, 1074
BstMWI	GCNNNNNNNGC	5 cut(s)	16, 136, 224, 880, 889
BstNI	CCWGG	3 cut(s)	339, 471, 571
BstPAI	GACNNNNGTC	2 cut(s)	900, 1274
BstPI	GGTNACC	2 cut(s)	590, 947
BstSCI	CCNGG	3 cut(s)	337, 469, 569
BstSLI	GKGCMC	2 cut(s)	492, 1288
BstUI	CGCG	3 cut(s)	139, 141, 1143
BstV1I	GCAGC	3 cut(s)	89, 853, 883
BstV2I	GAAGAC	1 cut(s)	518
Bsu15I	ATCGAT	1 cut(s)	123
BsuRI	GGCC	5 cut(s)	258, 756, 1121, 1266, 1337
BsuTUI	ATCGAT	1 cut(s)	123
BtrI	CACGTC	1 cut(s)	959
BtsI	GCAGTG	1 cut(s)	1286
BtsIMutI	CAGTG	3 cut(s)	481, 534, 1286
BveI	ACCTGC	1 cut(s)	111
Cac8I	GCNNGC	9 cut(s)	21, 82, 86, 139, 220, 688, 700, 1264, 1305
CfoI	GCGC	4 cut(s)	139, 141, 218, 841
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	1138, 1269
ClaI	ATCGAT	1 cut(s)	123
CseI	GACGC	4 cut(s)	654, 704, 722, 1240
Csp6I	GTAC	5 cut(s)	41, 298, 940, 1094, 1351
CviAII	CATG	4 cut(s)	65, 742, 893, 1058
CviQI	GTAC	5 cut(s)	41, 298, 940, 1094, 1351
DdeI	CTNAG	4 cut(s)	6, 47, 73, 348
DpnI	GATC	6 cut(s)	126, 158, 192, 664, 765, 1076
DpnII	GATC	6 cut(s)	124, 156, 190, 662, 763, 1074
DraIII	CACNNNGTG	1 cut(s)	487
DrdI	GACNNNNNNGTC	2 cut(s)	1136, 1244
DseDI	GACNNNNNNGTC	2 cut(s)	1136, 1244
EaeI	YGGCCR	1 cut(s)	1264
Eam1104I	CTCTTC	2 cut(s)	384, 1326
EarI	CTCTTC	2 cut(s)	384, 1326
Ecl136II	GAGCTC	1 cut(s)	1380
Eco130I	CCWWGG	1 cut(s)	943
Eco24I	GRGCYC	1 cut(s)	1382
Eco47I	GGWCC	2 cut(s)	1138, 1269
Eco53kI	GAGCTC	1 cut(s)	1380
Eco57I	CTGAAG	1 cut(s)	1367
Eco91I	GGTNACC	2 cut(s)	590, 947
EcoICRI	GAGCTC	1 cut(s)	1380
EcoO65I	GGTNACC	2 cut(s)	590, 947
EcoRII	CCWGG	3 cut(s)	337, 469, 569
EcoT14I	CCWWGG	1 cut(s)	943
EcoT38I	GRGCYC	1 cut(s)	1382
ErhI	CCWWGG	1 cut(s)	943
Esp3I	CGTCTC	1 cut(s)	637
FaeI	CATG	4 cut(s)	68, 745, 896, 1061
FaqI	GGGAC	2 cut(s)	891, 1148
FatI	CATG	4 cut(s)	64, 741, 892, 1057
FauI	CCCGC	3 cut(s)	93, 580, 1173
FbaI	TGATCA	2 cut(s)	763, 1074
FblI	GTMKAC	1 cut(s)	726
Fnu4HI	GCNGC	4 cut(s)	78, 228, 842, 872
FriOI	GRGCYC	1 cut(s)	1382
Fsp4HI	GCNGC	4 cut(s)	78, 228, 842, 872
FspBI	CTAG	4 cut(s)	236, 699, 954, 1089
GlaI	GCGC	4 cut(s)	138, 140, 217, 840
GluI	GCNGC	4 cut(s)	78, 228, 842, 872
HaeIII	GGCC	5 cut(s)	258, 756, 1121, 1266, 1337
HapII	CCGG	4 cut(s)	211, 219, 1267, 1292
HgaI	GACGC	4 cut(s)	654, 704, 722, 1240
HhaI	GCGC	4 cut(s)	139, 141, 218, 841
Hin1I	GRCGYC	1 cut(s)	646
Hin1II	CATG	4 cut(s)	68, 745, 896, 1061
Hin6I	GCGC	4 cut(s)	137, 139, 216, 839
HinP1I	GCGC	4 cut(s)	137, 139, 216, 839
HincII	GTYRAC	1 cut(s)	1198
HindII	GTYRAC	1 cut(s)	1198
HinfI	GANTC	3 cut(s)	95, 182, 1209
HpaII	CCGG	4 cut(s)	211, 219, 1267, 1292
HphI	GGTGA	5 cut(s)	53, 232, 461, 498, 959
Hpy166II	GTNNAC	4 cut(s)	481, 490, 727, 1198
Hpy188I	TCNGA	4 cut(s)	156, 426, 443, 1079
Hpy188III	TCNNGA	6 cut(s)	347, 530, 784, 1228, 1279, 1328
Hpy8I	GTNNAC	4 cut(s)	481, 490, 727, 1198
Hpy99I	CGWCG	1 cut(s)	410
HpyAV	CCTTC	6 cut(s)	279, 421, 614, 620, 882, 1183
HpyCH4III	ACNGT	2 cut(s)	164, 1369
HpyCH4IV	ACGT	2 cut(s)	958, 1071
HpyCH4V	TGCA	9 cut(s)	106, 332, 490, 710, 921, 1055, 1186, 1223, 1307
HpyF10VI	GCNNNNNNNGC	5 cut(s)	16, 136, 224, 880, 889
HpyF3I	CTNAG	4 cut(s)	6, 47, 73, 348
HpySE526I	ACGT	2 cut(s)	958, 1071
Hsp92I	GRCGYC	1 cut(s)	646
Hsp92II	CATG	4 cut(s)	68, 745, 896, 1061
HspAI	GCGC	4 cut(s)	137, 139, 216, 839
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
Ksp22I	TGATCA	2 cut(s)	763, 1074
Kzo9I	GATC	6 cut(s)	124, 156, 190, 662, 763, 1074
LmnI	GCTCC	1 cut(s)	135
Lsp1109I	GCAGC	3 cut(s)	89, 853, 883
LweI	GCATC	2 cut(s)	999, 1332
MaeI	CTAG	4 cut(s)	236, 699, 954, 1089
MaeII	ACGT	2 cut(s)	958, 1071
MaeIII	GTNAC	5 cut(s)	12, 238, 449, 590, 947
MalI	GATC	6 cut(s)	126, 158, 192, 664, 765, 1076
MboI	GATC	6 cut(s)	124, 156, 190, 662, 763, 1074
MboII	GAAGA	5 cut(s)	401, 518, 611, 673, 1343
MhlI	GDGCHC	3 cut(s)	492, 1288, 1382
MluCI	AATT	6 cut(s)	89, 359, 502, 800, 822, 1320
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	123
MreI	CGCCGGCG	1 cut(s)	218
MroNI	GCCGGC	1 cut(s)	218
MroXI	GAANNNNTTC	1 cut(s)	206
MseI	TTAA	3 cut(s)	549, 609, 1026
MslI	CAYNNNNRTG	2 cut(s)	495, 897
MspCI	CTTAAG	1 cut(s)	1025
MspI	CCGG	4 cut(s)	211, 219, 1267, 1292
MspR9I	CCNGG	3 cut(s)	339, 471, 571
Mva1269I	GAATGC	2 cut(s)	74, 1223
MvaI	CCWGG	3 cut(s)	339, 471, 571
MvnI	CGCG	3 cut(s)	139, 141, 1143
MwoI	GCNNNNNNNGC	5 cut(s)	16, 136, 224, 880, 889
NaeI	GCCGGC	1 cut(s)	220
NdeII	GATC	6 cut(s)	124, 156, 190, 662, 763, 1074
NgoMIV	GCCGGC	1 cut(s)	218
NheI	GCTAGC	1 cut(s)	698
NlaIII	CATG	4 cut(s)	68, 745, 896, 1061
NlaIV	GGNNCC	1 cut(s)	1046
NmuCI	GTSAC	3 cut(s)	238, 449, 947
NspV	TTCGAA	2 cut(s)	357, 1212
PauI	GCGCGC	1 cut(s)	137
PctI	GAATGC	2 cut(s)	74, 1223
PdiI	GCCGGC	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	206
PfeI	GAWTC	2 cut(s)	95, 1209
PflMI	CCANNNNNTGG	1 cut(s)	983
PkrI	GCNGC	4 cut(s)	79, 229, 843, 873
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
Ppu21I	YACGTR	1 cut(s)	1072
PshAI	GACNNNNGTC	2 cut(s)	900, 1274
Psp124BI	GAGCTC	1 cut(s)	1382
Psp6I	CCWGG	3 cut(s)	337, 469, 569
PspEI	GGTNACC	2 cut(s)	590, 947
PspGI	CCWGG	3 cut(s)	337, 469, 569
PspN4I	GGNNCC	1 cut(s)	1046
PspPI	GGNCC	2 cut(s)	1138, 1269
PteI	GCGCGC	1 cut(s)	137
RsaI	GTAC	5 cut(s)	42, 299, 941, 1095, 1352
RsaNI	GTAC	5 cut(s)	41, 298, 940, 1094, 1351
RseI	CAYNNNNRTG	2 cut(s)	495, 897
SacI	GAGCTC	1 cut(s)	1382
SaqAI	TTAA	3 cut(s)	549, 609, 1026
SatI	GCNGC	4 cut(s)	78, 228, 842, 872
Sau3AI	GATC	6 cut(s)	124, 156, 190, 662, 763, 1074
Sau96I	GGNCC	2 cut(s)	1138, 1269
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	3 cut(s)	339, 471, 571
SduI	GDGCHC	3 cut(s)	492, 1288, 1382
SfaNI	GCATC	2 cut(s)	999, 1332
SfuI	TTCGAA	2 cut(s)	357, 1212
SgrAI	CRCCGGYG	1 cut(s)	218
SinI	GGWCC	2 cut(s)	1138, 1269
SmiMI	CAYNNNNRTG	2 cut(s)	495, 897
SmlI	CTYRAG	4 cut(s)	366, 1025, 1279, 1326
SmoI	CTYRAG	4 cut(s)	366, 1025, 1279, 1326
SpeI	ACTAGT	1 cut(s)	235
Sse9I	AATT	6 cut(s)	89, 359, 502, 800, 822, 1320
SsiI	CCGC	7 cut(s)	86, 227, 587, 962, 1141, 1166, 1244
SspI	AATATT	2 cut(s)	925, 1065
SspMI	CTAG	4 cut(s)	236, 699, 954, 1089
SstI	GAGCTC	1 cut(s)	1382
StyD4I	CCNGG	3 cut(s)	337, 469, 569
StyI	CCWWGG	1 cut(s)	943
TaaI	ACNGT	2 cut(s)	164, 1369
TaiI	ACGT	2 cut(s)	961, 1074
TaqI	TCGA	6 cut(s)	123, 159, 357, 405, 531, 1212
TaqII	GACCGA	2 cut(s)	576, 1264
TasI	AATT	6 cut(s)	89, 359, 502, 800, 822, 1320
TatI	WGTACW	3 cut(s)	297, 1093, 1350
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	2 cut(s)	95, 1209
Tru1I	TTAA	3 cut(s)	549, 609, 1026
Tru9I	TTAA	3 cut(s)	549, 609, 1026
TscAI	CASTG	3 cut(s)	488, 541, 1293
TseFI	GTSAC	3 cut(s)	238, 449, 947
TseI	GCWGC	3 cut(s)	77, 841, 871
Tsp45I	GTSAC	3 cut(s)	238, 449, 947
TspDTI	ATGAA	3 cut(s)	81, 758, 1074
TspRI	CASTG	3 cut(s)	488, 541, 1293
Van91I	CCANNNNNTGG	1 cut(s)	983
Vha464I	CTTAAG	1 cut(s)	1025
VneI	GTGCAC	1 cut(s)	488
VpaK11BI	GGWCC	2 cut(s)	1138, 1269
XapI	RAATTY	2 cut(s)	800, 1320
XmiI	GTMKAC	1 cut(s)	726
XmnI	GAANNNNTTC	1 cut(s)	206
XspI	CTAG	4 cut(s)	236, 699, 954, 1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.