Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Forward (+)

50268737 .. 50270779

Gene Structure 2043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG304200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGGCTAAGCCGTTACAGCTTGCTATTCCTCTTTGTCTGGTACTACTTAGTTTCCTCTTTCACCATGAATGCTTAGCAGCTCGCCCGCAATTTGAATCCAACCAGCAAAATGAATGCCAAATCGATCAGCTCCGAGCCCGCGAACCTGATATTCAGATCGACTGTGAAGCTGGTAGGATTGAGTCATGGGATCACTACCAGAATGATTTCCAGTGCGCCGGCGTTGCGGCTCAACGAGTCACCATTGAACCCAATGGCCTACACTTGCCTTCTTACACACATTCTCCTCAACTCATGTACATCGTCAAAGGTTGGGGTGTGATGATGACTGCATTGCCTGGCTGTCCAGAGACTTTCGAATTGTCTCAAGGTTCTCAACAAGGACAAGAAGAGGGGCAAGGCTTCGACGATTTAGAACGCCATCAGAAGGTTCGGCTCATCGGAGCGGGTGACATCATTGCTATTCCTCCTGGGATTGTCCACTGGGTGCACAACAATGGTAATTCACCACTTGTTGCCGTTAGTCTTCTCGACACTGGCAACGAGCTTAACCAGCTTGACCGAAACCCCAGGAGGTTCTATCTTGCGGGTAACCCAGAAGATGAGTTTAATCAGCACGAAGGAGAAGGCATAAGTCAGCAGAGACGCCATTCGGGTCAGGGATCAAACAACAATAACATCTTCGCAGGCTTTGACGCTAGCCTCCTTGCAGACGCTCTCAATGTAGACATCGAAACTGCCATGAAAGTTCAAGGCCAGAATGATCAAACACGAAGCCAAATCGTGAGAGTGGAGGGAAAATTTGGTTTCCTCCACCCACCAATTAGGTCATCACATGCGCAGCAAACCCAACAGGAACAACAAGATGAGCAGCAGGGACAGCAGGGAAGACATGACAATGGTCTCGGGGAGACATTGTGCAACATTGCTCTAAAAGAGTACCTTGGTGACCCTAGACGTGCGGACATTTACACGCCACAAGCTGGTCGCATCAATATCCTCAACAGCAATGATATGCCTATCCTTAAGCAAATGTCCCTCAGTGCCGAGACCGGTTTCTTGTACAATAATGCTATCTATAGCCCACATTGGAACCTCTTTGCACATGAAATATTCTACGTGATCAGAGGAAGTGCTAGAGTACAGGTAGTAAATGACAATGGCGAGGCCATATTGGACGATGAGGTCCGCGAGGGTCAGTTGTTTATAGTCCCGCATAACCACGCAGTCTTGCAGAAGGCTGTTGACAATCAGGGATTCGAATACATTGCATTCAAGACGCAGGACAATGCGGTCATCAACACTATGGCTGGCCGGACCTCTGTCTTGAGGGCACTGCCGGATAATGTGCTGGCAAATGCGTACCAAATTTCTCAAGAAGAGGCCAGGATGCTGAAGTACGAGAGGCAGGAGACTCTTGTATTGAGCTCATCAAGTTCCTCCTATAGTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

484

Amino Acids

54.12

Weight (kDa)

5.11

Isoelectric Point (pI)

48.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	46 - 200	2.7e-24	Cupin
Cupin_1	PF00190	315 - 462	2.8e-39	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1184, 1292
Acc16I	TGCGCA	1 cut(s)	840
AccB7I	CCANNNNNTGG	1 cut(s)	983
AccBSI	CCGCTC	1 cut(s)	446
AccI	GTMKAC	1 cut(s)	726
AccII	CGCG	2 cut(s)	141, 1191
AciI	CCGC	9 cut(s)	86, 139, 227, 446, 587, 962, 1189, 1214, 1292
AclWI	GGATC	2 cut(s)	198, 670
AcoI	YGGCCR	1 cut(s)	1312
AcsI	RAATTY	2 cut(s)	800, 1368
AcuI	CTGAAG	1 cut(s)	1415
AcyI	GRCGYC	1 cut(s)	646
AdeI	CACNNNGTG	1 cut(s)	487
AfaI	GTAC	7 cut(s)	42, 299, 941, 1064, 1143, 1364, 1400
AfiI	CCNNNNNNNGG	2 cut(s)	427, 983
AflII	CTTAAG	1 cut(s)	1025
AgeI	ACCGGT	1 cut(s)	1052
AgsI	TTSAA	4 cut(s)	95, 248, 752, 1276
AjiI	CACGTC	1 cut(s)	959
AjnI	CCWGG	4 cut(s)	337, 469, 569, 1385
AluBI	AGCT	8 cut(s)	19, 80, 130, 170, 547, 556, 983, 1428
AluI	AGCT	8 cut(s)	19, 80, 130, 170, 547, 556, 983, 1428
Alw21I	GWGCWC	2 cut(s)	492, 1430
Alw26I	GTCTC	7 cut(s)	344, 369, 637, 905, 908, 1043, 1406
Alw44I	GTGCAC	1 cut(s)	488
AlwI	GGATC	2 cut(s)	198, 670
Ama87I	CYCGRG	1 cut(s)	905
AoxI	GGCC	5 cut(s)	256, 754, 1167, 1312, 1383
ApaLI	GTGCAC	1 cut(s)	488
ApeKI	GCWGC	3 cut(s)	77, 841, 871
ApoI	RAATTY	2 cut(s)	800, 1368
AsiGI	ACCGGT	1 cut(s)	1052
Asp700I	GAANNNNTTC	1 cut(s)	206
AspLEI	GCGC	2 cut(s)	218, 841
AspS9I	GGNCC	2 cut(s)	1186, 1317
AsuHPI	GGTGA	5 cut(s)	53, 232, 461, 498, 959
AsuII	TTCGAA	2 cut(s)	357, 1260
AsuNHI	GCTAGC	1 cut(s)	698
AvaI	CYCGRG	1 cut(s)	905
AvaII	GGWCC	2 cut(s)	1186, 1317
BaeGI	GKGCMC	2 cut(s)	492, 1336
BanII	GRGCYC	2 cut(s)	139, 1430
BbsI	GAAGAC	2 cut(s)	518, 895
Bbv12I	GWGCWC	2 cut(s)	492, 1430
BbvI	GCAGC	3 cut(s)	89, 853, 883
BccI	CCATC	1 cut(s)	429
BceAI	ACGGC	1 cut(s)	503
BcgI	CGANNNNNNTGC	2 cut(s)	1250, 1284
BciT130I	CCWGG	4 cut(s)	339, 471, 571, 1387
BclI	TGATCA	2 cut(s)	763, 1122
BcoDI	GTCTC	7 cut(s)	344, 369, 637, 905, 908, 1043, 1406
BfaI	CTAG	3 cut(s)	699, 954, 1137
BfmI	CTRYAG	2 cut(s)	1078, 1444
BfrI	CTTAAG	1 cut(s)	1025
BisI	GCNGC	4 cut(s)	78, 228, 842, 872
BlpI	GCTNAGC	2 cut(s)	6, 73
BlsI	GCNGC	4 cut(s)	79, 229, 843, 873
Bme1390I	CCNGG	4 cut(s)	339, 471, 571, 1387
Bme18I	GGWCC	2 cut(s)	1186, 1317
BmeT110I	CYCGRG	1 cut(s)	905
BmgBI	CACGTC	1 cut(s)	959
BmgT120I	GGNCC	2 cut(s)	1186, 1317
BmiI	GGNNCC	1 cut(s)	1094
BmrFI	CCNGG	4 cut(s)	339, 471, 571, 1387
BmrI	ACTGGG	1 cut(s)	493
BmsI	GCATC	2 cut(s)	999, 1380
BmtI	GCTAGC	1 cut(s)	702
BmuI	ACTGGG	1 cut(s)	493
BoxI	GACNNNNGTC	2 cut(s)	900, 1322
BpiI	GAAGAC	2 cut(s)	518, 895
Bpu1102I	GCTNAGC	2 cut(s)	6, 73
Bpu14I	TTCGAA	2 cut(s)	357, 1260
BpuEI	CTTGAG	3 cut(s)	351, 1348, 1359
Bsa29I	ATCGAT	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	1120
BsaHI	GRCGYC	1 cut(s)	646
BsaI	GGTCTC	2 cut(s)	908, 1043
BsaJI	CCNNGG	3 cut(s)	470, 569, 943
BsaWI	WCCGGW	1 cut(s)	1052
BsaXI	ACNNNNNCTCC	4 cut(s)	268, 298, 902, 932
Bsc4I	CCNNNNNNNGG	2 cut(s)	427, 983
Bse118I	RCCGGY	2 cut(s)	218, 1052
Bse1I	ACTGG	3 cut(s)	211, 488, 541
Bse3DI	GCAATG	5 cut(s)	332, 456, 924, 1015, 1266
BseBI	CCWGG	4 cut(s)	339, 471, 571, 1387
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	3 cut(s)	470, 569, 943
BseGI	GGATG	1 cut(s)	1395
BseLI	CCNNNNNNNGG	2 cut(s)	427, 983
BseMI	GCAATG	5 cut(s)	332, 456, 924, 1015, 1266
BseMII	CTCAG	1 cut(s)	1054
BseNI	ACTGG	3 cut(s)	211, 488, 541
BseRI	GAGGAG	1 cut(s)	276
BseSI	GKGCMC	2 cut(s)	492, 1336
BseXI	GCAGC	3 cut(s)	89, 853, 883
Bsh1236I	CGCG	2 cut(s)	141, 1191
BshFI	GGCC	5 cut(s)	258, 756, 1169, 1314, 1385
BshTI	ACCGGT	1 cut(s)	1052
BshVI	ATCGAT	1 cut(s)	123
BsiHKAI	GWGCWC	2 cut(s)	492, 1430
BsiHKCI	CYCGRG	1 cut(s)	905
BsiSI	CCGG	4 cut(s)	219, 1053, 1315, 1340
BslFI	GGGAC	3 cut(s)	891, 1021, 1196
BslI	CCNNNNNNNGG	2 cut(s)	427, 983
BsmAI	GTCTC	7 cut(s)	344, 369, 637, 905, 908, 1043, 1406
BsmBI	CGTCTC	1 cut(s)	637
BsmFI	GGGAC	3 cut(s)	891, 1021, 1196
BsmI	GAATGC	3 cut(s)	74, 119, 1271
BsnI	GGCC	5 cut(s)	258, 756, 1169, 1314, 1385
Bso31I	GGTCTC	2 cut(s)	908, 1043
BsoBI	CYCGRG	1 cut(s)	905
Bsp119I	TTCGAA	2 cut(s)	357, 1260
Bsp1286I	GDGCHC	4 cut(s)	139, 492, 1336, 1430
Bsp1407I	TGTACA	2 cut(s)	297, 1062
Bsp143I	GATC	6 cut(s)	124, 156, 190, 662, 763, 1122
Bsp1720I	GCTNAGC	2 cut(s)	6, 73
BspACI	CCGC	9 cut(s)	86, 139, 227, 446, 587, 962, 1189, 1214, 1292
BspANI	GGCC	5 cut(s)	258, 756, 1169, 1314, 1385
BspCNI	CTCAG	1 cut(s)	1053
BspDI	ATCGAT	1 cut(s)	123
BspFNI	CGCG	2 cut(s)	141, 1191
BspLI	GGNNCC	1 cut(s)	1094
BspOI	GCTAGC	1 cut(s)	702
BspPI	GGATC	2 cut(s)	198, 670
BspT104I	TTCGAA	2 cut(s)	357, 1260
BspTI	CTTAAG	1 cut(s)	1025
BspTNI	GGTCTC	2 cut(s)	908, 1043
BsrBI	CCGCTC	1 cut(s)	446
BsrDI	GCAATG	5 cut(s)	332, 456, 924, 1015, 1266
BsrFI	RCCGGY	2 cut(s)	218, 1052
BsrGI	TGTACA	2 cut(s)	297, 1062
BsrI	ACTGG	3 cut(s)	211, 488, 541
BssAI	RCCGGY	2 cut(s)	218, 1052
BssECI	CCNNGG	3 cut(s)	470, 569, 943
BssMI	GATC	6 cut(s)	124, 156, 190, 662, 763, 1122
BssNI	GRCGYC	1 cut(s)	646
BssT1I	CCWWGG	1 cut(s)	943
Bst2UI	CCWGG	4 cut(s)	339, 471, 571, 1387
Bst4CI	ACNGT	1 cut(s)	164
Bst6I	CTCTTC	2 cut(s)	384, 1374
BstACI	GRCGYC	1 cut(s)	646
BstAFI	CTTAAG	1 cut(s)	1025
BstAUI	TGTACA	2 cut(s)	297, 1062
BstBAI	YACGTR	1 cut(s)	1120
BstBI	TTCGAA	2 cut(s)	357, 1260
BstC8I	GCNNGC	9 cut(s)	21, 82, 86, 139, 220, 688, 700, 1312, 1353
BstDEI	CTNAG	4 cut(s)	6, 47, 73, 1040
BstEII	GGTNACC	2 cut(s)	590, 947
BstF5I	GGATG	1 cut(s)	1395
BstFNI	CGCG	2 cut(s)	141, 1191
BstHHI	GCGC	2 cut(s)	218, 841
BstKTI	GATC	6 cut(s)	127, 159, 193, 665, 766, 1125
BstMAI	GTCTC	7 cut(s)	344, 369, 637, 905, 908, 1043, 1406
BstMBI	GATC	6 cut(s)	124, 156, 190, 662, 763, 1122
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 224, 553, 880
BstNI	CCWGG	4 cut(s)	339, 471, 571, 1387
BstNSI	RCATGY	1 cut(s)	839
BstPAI	GACNNNNGTC	2 cut(s)	900, 1322
BstPI	GGTNACC	2 cut(s)	590, 947
BstSCI	CCNGG	4 cut(s)	337, 469, 569, 1385
BstSFI	CTRYAG	2 cut(s)	1078, 1444
BstSLI	GKGCMC	2 cut(s)	492, 1336
BstUI	CGCG	2 cut(s)	141, 1191
BstV1I	GCAGC	3 cut(s)	89, 853, 883
BstV2I	GAAGAC	2 cut(s)	518, 895
Bsu15I	ATCGAT	1 cut(s)	123
BsuRI	GGCC	5 cut(s)	258, 756, 1169, 1314, 1385
BsuTUI	ATCGAT	1 cut(s)	123
BtrI	CACGTC	1 cut(s)	959
BtsCI	GGATG	1 cut(s)	1395
BtsI	GCAGTG	1 cut(s)	1334
BtsIMutI	CAGTG	5 cut(s)	218, 481, 534, 1048, 1334
Cac8I	GCNNGC	9 cut(s)	21, 82, 86, 139, 220, 688, 700, 1312, 1353
CfoI	GCGC	2 cut(s)	218, 841
Cfr10I	RCCGGY	2 cut(s)	218, 1052
Cfr13I	GGNCC	2 cut(s)	1186, 1317
ClaI	ATCGAT	1 cut(s)	123
CseI	GACGC	4 cut(s)	654, 704, 722, 1288
Csp6I	GTAC	7 cut(s)	41, 298, 940, 1063, 1142, 1363, 1399
CspAI	ACCGGT	1 cut(s)	1052
CviAII	CATG	7 cut(s)	65, 186, 295, 742, 836, 893, 1106
CviQI	GTAC	7 cut(s)	41, 298, 940, 1063, 1142, 1363, 1399
DdeI	CTNAG	4 cut(s)	6, 47, 73, 1040
DpnI	GATC	6 cut(s)	126, 158, 192, 664, 765, 1124
DpnII	GATC	6 cut(s)	124, 156, 190, 662, 763, 1122
DraIII	CACNNNGTG	1 cut(s)	487
DrdI	GACNNNNNNGTC	2 cut(s)	1184, 1292
DseDI	GACNNNNNNGTC	2 cut(s)	1184, 1292
EaeI	YGGCCR	1 cut(s)	1312
Eam1104I	CTCTTC	2 cut(s)	384, 1374
EarI	CTCTTC	2 cut(s)	384, 1374
Ecl136II	GAGCTC	1 cut(s)	1428
Eco130I	CCWWGG	1 cut(s)	943
Eco24I	GRGCYC	2 cut(s)	139, 1430
Eco31I	GGTCTC	2 cut(s)	908, 1043
Eco47I	GGWCC	2 cut(s)	1186, 1317
Eco53kI	GAGCTC	1 cut(s)	1428
Eco57I	CTGAAG	1 cut(s)	1415
Eco88I	CYCGRG	1 cut(s)	905
Eco91I	GGTNACC	2 cut(s)	590, 947
EcoICRI	GAGCTC	1 cut(s)	1428
EcoO65I	GGTNACC	2 cut(s)	590, 947
EcoRII	CCWGG	4 cut(s)	337, 469, 569, 1385
EcoT14I	CCWWGG	1 cut(s)	943
EcoT38I	GRGCYC	2 cut(s)	139, 1430
ErhI	CCWWGG	1 cut(s)	943
Esp3I	CGTCTC	1 cut(s)	637
FaeI	CATG	7 cut(s)	68, 189, 298, 745, 839, 896, 1109
FalI	AAGNNNNNCTT	2 cut(s)	927, 959
FaqI	GGGAC	3 cut(s)	891, 1021, 1196
FatI	CATG	7 cut(s)	64, 185, 294, 741, 835, 892, 1105
FauI	CCCGC	5 cut(s)	93, 146, 439, 580, 1221
FbaI	TGATCA	2 cut(s)	763, 1122
FblI	GTMKAC	1 cut(s)	726
Fnu4HI	GCNGC	4 cut(s)	78, 228, 842, 872
FokI	GGATG	1 cut(s)	1402
FriOI	GRGCYC	2 cut(s)	139, 1430
Fsp4HI	GCNGC	4 cut(s)	78, 228, 842, 872
FspBI	CTAG	3 cut(s)	699, 954, 1137
FspI	TGCGCA	1 cut(s)	840
GlaI	GCGC	2 cut(s)	217, 840
GluI	GCNGC	4 cut(s)	78, 228, 842, 872
HaeIII	GGCC	5 cut(s)	258, 756, 1169, 1314, 1385
HapII	CCGG	4 cut(s)	219, 1053, 1315, 1340
HgaI	GACGC	4 cut(s)	654, 704, 722, 1288
HhaI	GCGC	2 cut(s)	218, 841
Hin1I	GRCGYC	1 cut(s)	646
Hin1II	CATG	7 cut(s)	68, 189, 298, 745, 839, 896, 1109
Hin6I	GCGC	2 cut(s)	216, 839
HinP1I	GCGC	2 cut(s)	216, 839
HincII	GTYRAC	1 cut(s)	1246
HindII	GTYRAC	1 cut(s)	1246
HinfI	GANTC	5 cut(s)	95, 182, 237, 1257, 1414
HpaII	CCGG	4 cut(s)	219, 1053, 1315, 1340
HphI	GGTGA	5 cut(s)	53, 232, 461, 498, 959
Hpy166II	GTNNAC	4 cut(s)	481, 490, 727, 1246
Hpy188I	TCNGA	5 cut(s)	134, 156, 426, 443, 1127
Hpy188III	TCNNGA	6 cut(s)	347, 530, 784, 1276, 1327, 1376
Hpy8I	GTNNAC	4 cut(s)	481, 490, 727, 1246
Hpy99I	CGWCG	1 cut(s)	410
HpyAV	CCTTC	5 cut(s)	279, 421, 614, 620, 1231
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	2 cut(s)	958, 1119
HpyCH4V	TGCA	7 cut(s)	332, 490, 710, 921, 1103, 1234, 1271
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 224, 553, 880
HpyF3I	CTNAG	4 cut(s)	6, 47, 73, 1040
HpySE526I	ACGT	2 cut(s)	958, 1119
Hsp92I	GRCGYC	1 cut(s)	646
Hsp92II	CATG	7 cut(s)	68, 189, 298, 745, 839, 896, 1109
HspAI	GCGC	2 cut(s)	216, 839
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
Ksp22I	TGATCA	2 cut(s)	763, 1122
Kzo9I	GATC	6 cut(s)	124, 156, 190, 662, 763, 1122
LmnI	GCTCC	2 cut(s)	135, 443
Lsp1109I	GCAGC	3 cut(s)	89, 853, 883
LweI	GCATC	2 cut(s)	999, 1380
MaeI	CTAG	3 cut(s)	699, 954, 1137
MaeII	ACGT	2 cut(s)	958, 1119
MaeIII	GTNAC	5 cut(s)	12, 238, 449, 590, 947
MalI	GATC	6 cut(s)	126, 158, 192, 664, 765, 1124
MbiI	CCGCTC	1 cut(s)	446
MboI	GATC	6 cut(s)	124, 156, 190, 662, 763, 1122
MboII	GAAGA	6 cut(s)	401, 518, 611, 673, 900, 1391
MhlI	GDGCHC	4 cut(s)	139, 492, 1336, 1430
MluCI	AATT	6 cut(s)	89, 359, 502, 800, 822, 1368
MlyI	GAGTC	3 cut(s)	191, 246, 1408
MmeI	TCCRAC	1 cut(s)	123
MreI	CGCCGGCG	1 cut(s)	218
MroNI	GCCGGC	1 cut(s)	218
MroXI	GAANNNNTTC	1 cut(s)	206
MseI	TTAA	3 cut(s)	549, 609, 1026
MslI	CAYNNNNRTG	2 cut(s)	495, 897
MspCI	CTTAAG	1 cut(s)	1025
MspI	CCGG	4 cut(s)	219, 1053, 1315, 1340
MspR9I	CCNGG	4 cut(s)	339, 471, 571, 1387
Mva1269I	GAATGC	3 cut(s)	74, 119, 1271
MvaI	CCWGG	4 cut(s)	339, 471, 571, 1387
MvnI	CGCG	2 cut(s)	141, 1191
MwoI	GCNNNNNNNGC	4 cut(s)	16, 224, 553, 880
NaeI	GCCGGC	1 cut(s)	220
NdeII	GATC	6 cut(s)	124, 156, 190, 662, 763, 1122
NgoMIV	GCCGGC	1 cut(s)	218
NheI	GCTAGC	1 cut(s)	698
NlaIII	CATG	7 cut(s)	68, 189, 298, 745, 839, 896, 1109
NlaIV	GGNNCC	1 cut(s)	1094
NmeAIII	GCCGAG	1 cut(s)	1072
NmuCI	GTSAC	3 cut(s)	238, 449, 947
NsbI	TGCGCA	1 cut(s)	840
NspI	RCATGY	1 cut(s)	839
NspV	TTCGAA	2 cut(s)	357, 1260
PctI	GAATGC	3 cut(s)	74, 119, 1271
PdiI	GCCGGC	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	206
PfeI	GAWTC	2 cut(s)	95, 1257
PflMI	CCANNNNNTGG	1 cut(s)	983
PinAI	ACCGGT	1 cut(s)	1052
PkrI	GCNGC	4 cut(s)	79, 229, 843, 873
PleI	GAGTC	3 cut(s)	190, 245, 1408
PpsI	GAGTC	3 cut(s)	190, 245, 1408
Ppu21I	YACGTR	1 cut(s)	1120
PshAI	GACNNNNGTC	2 cut(s)	900, 1322
Psp124BI	GAGCTC	1 cut(s)	1430
Psp6I	CCWGG	4 cut(s)	337, 469, 569, 1385
PspEI	GGTNACC	2 cut(s)	590, 947
PspGI	CCWGG	4 cut(s)	337, 469, 569, 1385
PspN4I	GGNNCC	1 cut(s)	1094
PspPI	GGNCC	2 cut(s)	1186, 1317
RsaI	GTAC	7 cut(s)	42, 299, 941, 1064, 1143, 1364, 1400
RsaNI	GTAC	7 cut(s)	41, 298, 940, 1063, 1142, 1363, 1399
RseI	CAYNNNNRTG	2 cut(s)	495, 897
SacI	GAGCTC	1 cut(s)	1430
SaqAI	TTAA	3 cut(s)	549, 609, 1026
SatI	GCNGC	4 cut(s)	78, 228, 842, 872
Sau3AI	GATC	6 cut(s)	124, 156, 190, 662, 763, 1122
Sau96I	GGNCC	2 cut(s)	1186, 1317
SchI	GAGTC	3 cut(s)	191, 246, 1408
ScrFI	CCNGG	4 cut(s)	339, 471, 571, 1387
SduI	GDGCHC	4 cut(s)	139, 492, 1336, 1430
SfaNI	GCATC	2 cut(s)	999, 1380
SfcI	CTRYAG	2 cut(s)	1078, 1444
SfuI	TTCGAA	2 cut(s)	357, 1260
SgrAI	CRCCGGYG	1 cut(s)	218
SinI	GGWCC	2 cut(s)	1186, 1317
SmiMI	CAYNNNNRTG	2 cut(s)	495, 897
SmlI	CTYRAG	4 cut(s)	366, 1025, 1327, 1374
SmoI	CTYRAG	4 cut(s)	366, 1025, 1327, 1374
Sse9I	AATT	6 cut(s)	89, 359, 502, 800, 822, 1368
SsiI	CCGC	9 cut(s)	86, 139, 227, 446, 587, 962, 1189, 1214, 1292
SspI	AATATT	1 cut(s)	1113
SspMI	CTAG	3 cut(s)	699, 954, 1137
SstI	GAGCTC	1 cut(s)	1430
StyD4I	CCNGG	4 cut(s)	337, 469, 569, 1385
StyI	CCWWGG	1 cut(s)	943
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	2 cut(s)	961, 1122
TaqI	TCGA	7 cut(s)	123, 159, 357, 405, 531, 732, 1260
TaqII	GACCGA	1 cut(s)	576
TasI	AATT	6 cut(s)	89, 359, 502, 800, 822, 1368
TatI	WGTACW	3 cut(s)	297, 1062, 1141
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	2 cut(s)	95, 1257
Tru1I	TTAA	3 cut(s)	549, 609, 1026
Tru9I	TTAA	3 cut(s)	549, 609, 1026
TscAI	CASTG	5 cut(s)	218, 488, 541, 1048, 1341
TseFI	GTSAC	3 cut(s)	238, 449, 947
TseI	GCWGC	3 cut(s)	77, 841, 871
Tsp45I	GTSAC	3 cut(s)	238, 449, 947
TspDTI	ATGAA	4 cut(s)	81, 126, 758, 1122
TspRI	CASTG	5 cut(s)	218, 488, 541, 1048, 1341
Van91I	CCANNNNNTGG	1 cut(s)	983
Vha464I	CTTAAG	1 cut(s)	1025
VneI	GTGCAC	1 cut(s)	488
VpaK11BI	GGWCC	2 cut(s)	1186, 1317
XapI	RAATTY	2 cut(s)	800, 1368
XceI	RCATGY	1 cut(s)	839
XmiI	GTMKAC	1 cut(s)	726
XmnI	GAANNNNTTC	1 cut(s)	206
XspI	CTAG	3 cut(s)	699, 954, 1137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.