Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8147412.1

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 647

Gene Structure 647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8147412.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 556 bp

acaaggacaacaaggacaacaagaaaggagcaggcagcaacggcagggaaacaacaacaacaacatctatgccggcttcgagacacagctcctcgccgacgctctcaacatcgaccaacagactgcccagcagctccagggacagaacgacaacaggccacagattgttagggttcagggacgtctcgacttcgtcgagccaccacggtcacagagggaggaaagacaactgcaaggacaacaaggacaacagggacagaatggccttgaggagctattctgccacatgaagatcaagcagaacatcggcaagccttcattggccgacgtcttcagcccgcaagccggtcgcatcagcaccctcaacagctttagcctgcctattctcaggcaccttcgcctcagtgctgagagaggcttcttgtacaacaatgctatccacagcccacactggaacttgaatgcccatgagatcgtctatgtcatcagaggtagcgccagggttcaggtggtgaacgacaacggcgagaccatcttggacgaccaggtccgccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

185

Amino Acids

21.06

Weight (kDa)

8.16

Isoelectric Point (pI)

57.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	546
AatII	GACGTC	2 cut(s)	185, 331
AccB1I	GGYRCC	1 cut(s)	391
AciI	CCGC	2 cut(s)	339, 551
AcoI	YGGCCR	1 cut(s)	322
AcuI	CTGAAG	1 cut(s)	317
AcyI	GRCGYC	2 cut(s)	182, 328
AfaI	GTAC	1 cut(s)	426
AfiI	CCNNNNNNNGG	1 cut(s)	345
AgsI	TTSAA	1 cut(s)	461
AjnI	CCWGG	3 cut(s)	136, 498, 544
AluBI	AGCT	4 cut(s)	89, 134, 275, 370
AluI	AGCT	4 cut(s)	89, 134, 275, 370
Alw26I	GTCTC	3 cut(s)	75, 189, 522
AoxI	GGCC	3 cut(s)	156, 263, 322
ApeKI	GCWGC	2 cut(s)	35, 131
AspLEI	GCGC	1 cut(s)	498
AspS9I	GGNCC	1 cut(s)	548
AsuHPI	GGTGA	1 cut(s)	524
AvaII	GGWCC	1 cut(s)	548
BanI	GGYRCC	1 cut(s)	391
BbsI	GAAGAC	1 cut(s)	323
BbvI	GCAGC	2 cut(s)	47, 143
BccI	CCATC	1 cut(s)	540
BceAI	ACGGC	2 cut(s)	57, 539
BcgI	CGANNNNNNTGC	2 cut(s)	330, 364
BciT130I	CCWGG	3 cut(s)	138, 500, 546
BcoDI	GTCTC	3 cut(s)	75, 189, 522
BfoI	RGCGCY	1 cut(s)	499
BisI	GCNGC	2 cut(s)	36, 132
BlsI	GCNGC	2 cut(s)	37, 133
Bme1390I	CCNGG	3 cut(s)	138, 500, 546
Bme18I	GGWCC	1 cut(s)	548
BmgT120I	GGNCC	1 cut(s)	548
BmiI	GGNNCC	1 cut(s)	393
BmrFI	CCNGG	3 cut(s)	138, 500, 546
BmsI	GCATC	1 cut(s)	361
BpiI	GAAGAC	1 cut(s)	323
BpmI	CTGGAG	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	288
BsaHI	GRCGYC	2 cut(s)	182, 328
BsaI	GGTCTC	1 cut(s)	522
BsaJI	CCNNGG	3 cut(s)	137, 204, 499
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse118I	RCCGGY	2 cut(s)	72, 345
Bse1I	ACTGG	1 cut(s)	456
BseBI	CCWGG	3 cut(s)	138, 500, 546
BseDI	CCNNGG	3 cut(s)	137, 204, 499
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseMII	CTCAG	3 cut(s)	400, 401, 416
BseNI	ACTGG	1 cut(s)	456
BseRI	GAGGAG	2 cut(s)	81, 285
BseXI	GCAGC	2 cut(s)	47, 143
BseYI	CCCAGC	1 cut(s)	127
Bsh1285I	CGRYCG	1 cut(s)	350
BshFI	GGCC	3 cut(s)	158, 265, 324
BshNI	GGYRCC	1 cut(s)	391
BsiEI	CGRYCG	1 cut(s)	350
BsiSI	CCGG	2 cut(s)	73, 346
BslFI	GGGAC	3 cut(s)	154, 193, 268
BslI	CCNNNNNNNGG	1 cut(s)	345
BsmAI	GTCTC	3 cut(s)	75, 189, 522
BsmBI	CGTCTC	1 cut(s)	189
BsmFI	GGGAC	3 cut(s)	154, 193, 268
BsmI	GAATGC	1 cut(s)	467
BsnI	GGCC	3 cut(s)	158, 265, 324
Bso31I	GGTCTC	1 cut(s)	522
Bsp1407I	TGTACA	1 cut(s)	424
Bsp143I	GATC	2 cut(s)	292, 472
BspACI	CCGC	2 cut(s)	339, 551
BspANI	GGCC	3 cut(s)	158, 265, 324
BspCNI	CTCAG	3 cut(s)	400, 401, 415
BspLI	GGNNCC	1 cut(s)	393
BspT107I	GGYRCC	1 cut(s)	391
BspTNI	GGTCTC	1 cut(s)	522
BsrFI	RCCGGY	2 cut(s)	72, 345
BsrGI	TGTACA	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	456
BssAI	RCCGGY	2 cut(s)	72, 345
BssECI	CCNNGG	3 cut(s)	137, 204, 499
BssMI	GATC	2 cut(s)	292, 472
BssNI	GRCGYC	2 cut(s)	182, 328
Bst2UI	CCWGG	3 cut(s)	138, 500, 546
Bst4CI	ACNGT	1 cut(s)	208
BstACI	GRCGYC	2 cut(s)	182, 328
BstAUI	TGTACA	1 cut(s)	424
BstC8I	GCNNGC	6 cut(s)	33, 74, 312, 339, 343, 378
BstDEI	CTNAG	3 cut(s)	387, 402, 409
BstDSI	CCRYGG	1 cut(s)	204
BstH2I	RGCGCY	1 cut(s)	499
BstHHI	GCGC	1 cut(s)	498
BstKTI	GATC	2 cut(s)	295, 475
BstMAI	GTCTC	3 cut(s)	75, 189, 522
BstMBI	GATC	2 cut(s)	292, 472
BstMCI	CGRYCG	1 cut(s)	350
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	3 cut(s)	138, 500, 546
BstSCI	CCNGG	3 cut(s)	136, 498, 544
BstV1I	GCAGC	2 cut(s)	47, 143
BstV2I	GAAGAC	1 cut(s)	323
BsuRI	GGCC	3 cut(s)	158, 265, 324
BtgI	CCRYGG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	410, 449
Cac8I	GCNNGC	6 cut(s)	33, 74, 312, 339, 343, 378
CfoI	GCGC	1 cut(s)	498
Cfr10I	RCCGGY	2 cut(s)	72, 345
Cfr13I	GGNCC	1 cut(s)	548
CseI	GACGC	1 cut(s)	108
CsiI	ACCWGGT	1 cut(s)	544
Csp6I	GTAC	1 cut(s)	425
CviAII	CATG	2 cut(s)	287, 468
CviQI	GTAC	1 cut(s)	425
DdeI	CTNAG	3 cut(s)	387, 402, 409
DpnI	GATC	2 cut(s)	294, 474
DpnII	GATC	2 cut(s)	292, 472
DrdI	GACNNNNNNGTC	1 cut(s)	546
DseDI	GACNNNNNNGTC	1 cut(s)	546
EaeI	YGGCCR	1 cut(s)	322
EciI	GGCGGA	1 cut(s)	540
Eco31I	GGTCTC	1 cut(s)	522
Eco47I	GGWCC	1 cut(s)	548
Eco57I	CTGAAG	1 cut(s)	317
EcoRII	CCWGG	3 cut(s)	136, 498, 544
Esp3I	CGTCTC	1 cut(s)	189
FaeI	CATG	2 cut(s)	290, 471
FaiI	YATR	4 cut(s)	70, 288, 469, 481
FaqI	GGGAC	3 cut(s)	154, 193, 268
FatI	CATG	2 cut(s)	286, 467
FauI	CCCGC	1 cut(s)	346
Fnu4HI	GCNGC	2 cut(s)	36, 132
Fsp4HI	GCNGC	2 cut(s)	36, 132
GlaI	GCGC	1 cut(s)	497
GluI	GCNGC	2 cut(s)	36, 132
GsaI	CCCAGC	1 cut(s)	131
GsuI	CTGGAG	1 cut(s)	120
HaeII	RGCGCY	1 cut(s)	499
HaeIII	GGCC	3 cut(s)	158, 265, 324
HapII	CCGG	2 cut(s)	73, 346
HgaI	GACGC	1 cut(s)	108
HhaI	GCGC	1 cut(s)	498
Hin1I	GRCGYC	2 cut(s)	182, 328
Hin1II	CATG	2 cut(s)	290, 471
Hin6I	GCGC	1 cut(s)	496
HinP1I	GCGC	1 cut(s)	496
HpaII	CCGG	2 cut(s)	73, 346
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	1 cut(s)	515
Hpy188I	TCNGA	1 cut(s)	489
Hpy188III	TCNNGA	2 cut(s)	80, 186
Hpy8I	GTNNAC	1 cut(s)	515
Hpy99I	CGWCG	3 cut(s)	102, 198, 330
HpyAV	CCTTC	2 cut(s)	325, 405
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	2 cut(s)	182, 328
HpyCH4V	TGCA	1 cut(s)	233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	3 cut(s)	387, 402, 409
HpySE526I	ACGT	2 cut(s)	182, 328
Hsp92I	GRCGYC	2 cut(s)	182, 328
Hsp92II	CATG	2 cut(s)	290, 471
HspAI	GCGC	1 cut(s)	496
KroI	GCCGGC	1 cut(s)	72
KroNI	GCCGGC	1 cut(s)	74
Kzo9I	GATC	2 cut(s)	292, 472
LmnI	GCTCC	4 cut(s)	28, 94, 139, 272
Lsp1109I	GCAGC	2 cut(s)	47, 143
LweI	GCATC	1 cut(s)	361
MabI	ACCWGGT	1 cut(s)	544
MaeII	ACGT	2 cut(s)	182, 328
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	2 cut(s)	294, 474
MboI	GATC	2 cut(s)	292, 472
MboII	GAAGA	2 cut(s)	302, 323
MnlI	CCTC	8 cut(s)	102, 208, 212, 263, 372, 408, 411, 483
MroNI	GCCGGC	1 cut(s)	72
MspI	CCGG	2 cut(s)	73, 346
MspR9I	CCNGG	3 cut(s)	138, 500, 546
Mva1269I	GAATGC	1 cut(s)	467
MvaI	CCWGG	3 cut(s)	138, 500, 546
MwoI	GCNNNNNNNGC	1 cut(s)	41
NaeI	GCCGGC	1 cut(s)	74
NdeII	GATC	2 cut(s)	292, 472
NgoMIV	GCCGGC	1 cut(s)	72
NlaIII	CATG	2 cut(s)	290, 471
NlaIV	GGNNCC	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	2 cut(s)	193, 523
PctI	GAATGC	1 cut(s)	467
PdiI	GCCGGC	1 cut(s)	74
PflFI	GACNNNGTC	2 cut(s)	192, 546
PkrI	GCNGC	2 cut(s)	37, 133
Psp6I	CCWGG	3 cut(s)	136, 498, 544
PspFI	CCCAGC	1 cut(s)	127
PspGI	CCWGG	3 cut(s)	136, 498, 544
PspN4I	GGNNCC	1 cut(s)	393
PspPI	GGNCC	1 cut(s)	548
PsyI	GACNNNGTC	2 cut(s)	192, 546
RsaI	GTAC	1 cut(s)	426
RsaNI	GTAC	1 cut(s)	425
SatI	GCNGC	2 cut(s)	36, 132
Sau3AI	GATC	2 cut(s)	292, 472
Sau96I	GGNCC	1 cut(s)	548
ScrFI	CCNGG	3 cut(s)	138, 500, 546
SexAI	ACCWGGT	1 cut(s)	544
SfaNI	GCATC	1 cut(s)	361
SinI	GGWCC	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	267
SmoI	CTYRAG	1 cut(s)	267
SsiI	CCGC	2 cut(s)	339, 551
StyD4I	CCNGG	3 cut(s)	136, 498, 544
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	2 cut(s)	185, 331
TaqI	TCGA	4 cut(s)	79, 112, 187, 196
TatI	WGTACW	1 cut(s)	424
TscAI	CASTG	2 cut(s)	410, 456
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	2 cut(s)	35, 131
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	2 cut(s)	303, 307
TspRI	CASTG	2 cut(s)	410, 456
Tth111I	GACNNNGTC	2 cut(s)	192, 546
VpaK11BI	GGWCC	1 cut(s)	548
XcmI	CCANNNNNNNNNTGG	1 cut(s)	506
ZraI	GACGTC	2 cut(s)	183, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.