Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Forward (+)

49641596 .. 49643445

Gene Structure 1850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G026240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1545 bp

ATGGCCAAGCATTTAGCTCTCGTTTTCTCTCTTTGCTTTATTGTTCTCTTCCACGGCTGCTTAGCCAGTCGCCAACAATCTCAGTTCAGCCAGCAAAATGAGTGCCAGCTGAACCAGATCCAAGCCCGCGAGCCCGACAACCGCATTGAGTGCGAAGCAGGTCGGATCGAGTCCTGGGACTACAACCAGGATGACTTCCAGTGCGCTGGTGTCGCCGTTCAGAGAATCACCATTGAGAGCAACGGCCTTCACTTGCCATCTTACACTAACACCCCACGACTAGTTTACGTCGTCCAAGGTTGGGGTCATGTAGGAATGGTGCTCCCTGGCTGTCCCGAGACTTTTGAAGAATCCGAGCAATCTGATGAGGAACAACAGGGCCAGCAACAACAATGGCAAGGCCAACGAGGCCGCCAGCAACAGGGACGCCGACAGGGACAACAAGAGAGCTTTGAGCAGCTAGACCGTCACCAGAGGGTCCGACGCGTCAAGGAAGGTGATGTCATTGCCATCCCCGCCGGAGTCACCTGCTGGACTCACAACCACGGTAACCAACCTCTTGTTTTTGTCAGTCTTTTTGATATGAGCAACAAGCGCAACCAGCTTGACCAAAACCCAAGGAAATTCTATCTTGCTGGTAACCCACAAGATGAGTTCAACCAACAAGGCCAAAGCCAATGGGGACAACAAGGACAACAAGGCCGTGGGCAACAAGGAAGGACCAGGCGCCAACAGCAGGGAAACAACAACAACAACATCTTTGCCGGCTTCGAGACACAGCTCCTCGCCGACGCTCTCAACATCGACCAACAGACAGCCCAGCGGCTCCAGGGACAGAACGACAACAGGCCACAGATTGTTAGGGTTAAGGGACGTTTCGACTTTGTCGAGCCACCACGATCACAGAGGGAGGAAAGACAAATGCAAGGACAACAAATGCAGGGACAACAAGGACAGTATGAACAGAATGGCATGGAGGAGCTCTTTTGTCACATGAAGATGAAACAGAACATTGGCAAACCTAAAATGGCCGACGTCTACAGCCCGCAAGCCGGTCACATCAGCACCCTCAACAGCTTCAGCATGCCTATTCTCAGGCGCCTCCGCCTCAGTGCCGAGAGAGGCTTCTTCTACAACAACGCTATCTACAGCCCACACTGGAACTTGAACGCCCATGAAGTCTACTACGTCATCAGGGGCAGCGCTAGGGTTCAGGTGGTGAACGACAATGGCGAGACCATCTTGGACGACCAGGTCCGGCAGGGACAGCTCTTCATCGTGCCACAGAACCACGCTGTGTTGCAAAAGGCCATGAGCAACGGATACGAGTACATTGCCTTCAAGACCGATGACAATGCCATGATGAACACCATGGCTGGCAGGACCTCCGTCCTGCGGGCACTCCCCGACGTGGTCCTCGCCAACGCCTATCAGATGGACCGTGACCAGGCAAGGAACCTCAAGTACAACAGGCAGGAGACCGTTGCTTTGAGCTCCTCAAGGTCTTCCCGGTCCCAGAGGAACTGGTGGGCTCTTGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

514

Amino Acids

59.1

Weight (kDa)

8.08

Isoelectric Point (pI)

59.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	41 - 215	1.8e-26	Cupin
Cupin_1	PF00190	337 - 484	1.4e-37	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	536
AasI	GACNNNNNNGTC	1 cut(s)	1253
AatII	GACGTC	1 cut(s)	1038
Acc36I	ACCTGC	2 cut(s)	149, 536
AccB1I	GGYRCC	2 cut(s)	726, 1098
AccI	GTMKAC	2 cut(s)	1038, 1182
AccII	CGCG	2 cut(s)	129, 486
AciI	CCGC	8 cut(s)	127, 142, 412, 516, 823, 1046, 1105, 1396
AclWI	GGATC	2 cut(s)	112, 173
AcoI	YGGCCR	2 cut(s)	3, 1029
AcsI	RAATTY	1 cut(s)	623
AcuI	CTGAAG	1 cut(s)	1063
AcyI	GRCGYC	4 cut(s)	427, 727, 1035, 1099
AdeI	CACNNNGTG	1 cut(s)	1297
AfaI	GTAC	2 cut(s)	1331, 1466
AfeI	AGCGCT	1 cut(s)	1204
AfiI	CCNNNNNNNGG	7 cut(s)	301, 421, 736, 1052, 1395, 1411, 1447
AflIII	ACRYGT	1 cut(s)	484
AgsI	TTSAA	4 cut(s)	347, 658, 1168, 1342
AhlI	ACTAGT	1 cut(s)	280
AjiI	CACGTC	1 cut(s)	1411
AjnI	CCWGG	7 cut(s)	173, 186, 325, 722, 828, 1251, 1446
Alw21I	GWGCWC	3 cut(s)	324, 984, 1496
Alw26I	GTCTC	4 cut(s)	332, 767, 1229, 1472
AlwI	GGATC	2 cut(s)	112, 173
Ama87I	CYCGRG	1 cut(s)	335
Aor51HI	AGCGCT	1 cut(s)	1204
ApeKI	GCWGC	3 cut(s)	57, 457, 1200
ApoI	RAATTY	1 cut(s)	623
ArsI	GACNNNNNNTTYG	2 cut(s)	1471, 1503
AspLEI	GCGC	5 cut(s)	206, 597, 729, 1101, 1205
AspS9I	GGNCC	8 cut(s)	379, 478, 720, 1255, 1383, 1414, 1438, 1512
AsuC2I	CCSGG	1 cut(s)	1510
AsuHPI	GGTGA	5 cut(s)	220, 461, 509, 517, 1231
AvaI	CYCGRG	1 cut(s)	335
AvaII	GGWCC	7 cut(s)	478, 720, 1255, 1383, 1414, 1438, 1512
BaeGI	GKGCMC	1 cut(s)	1402
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	726, 1098
BanII	GRGCYC	4 cut(s)	135, 984, 1496, 1534
BarI	GAAGNNNNNNTAC	2 cut(s)	1322, 1354
BbsI	GAAGAC	1 cut(s)	1497
Bbv12I	GWGCWC	3 cut(s)	324, 984, 1496
BbvI	GCAGC	3 cut(s)	44, 469, 1212
BccI	CCATC	4 cut(s)	265, 518, 1247, 1429
BceAI	ACGGC	4 cut(s)	70, 200, 259, 687
BcgI	CGANNNNNNTGC	4 cut(s)	1316, 1337, 1350, 1371
BciT130I	CCWGG	7 cut(s)	175, 188, 327, 724, 830, 1253, 1448
BciVI	GTATCC	1 cut(s)	1316
BcnI	CCSGG	1 cut(s)	1510
BcoDI	GTCTC	4 cut(s)	332, 767, 1229, 1472
BcuI	ACTAGT	1 cut(s)	280
BfaI	CTAG	3 cut(s)	281, 461, 1206
BfmI	CTRYAG	2 cut(s)	1039, 1147
BfoI	RGCGCY	3 cut(s)	730, 1102, 1206
BfuAI	ACCTGC	2 cut(s)	149, 536
BfuI	GTATCC	1 cut(s)	1316
BglI	GCCNNNNNGGC	1 cut(s)	408
BisI	GCNGC	5 cut(s)	58, 412, 458, 824, 1201
BlpI	GCTNAGC	1 cut(s)	61
BlsI	GCNGC	5 cut(s)	59, 413, 459, 825, 1202
Bme1390I	CCNGG	8 cut(s)	175, 188, 327, 724, 830, 1253, 1448, 1510
Bme18I	GGWCC	7 cut(s)	478, 720, 1255, 1383, 1414, 1438, 1512
BmeT110I	CYCGRG	1 cut(s)	335
BmgBI	CACGTC	1 cut(s)	1411
BmgT120I	GGNCC	8 cut(s)	379, 478, 720, 1255, 1383, 1414, 1438, 1512
BmiI	GGNNCC	6 cut(s)	479, 728, 827, 1100, 1457, 1514
BmrFI	CCNGG	8 cut(s)	175, 188, 327, 724, 830, 1253, 1448, 1510
BmsI	GCATC	1 cut(s)	1528
BoxI	GACNNNNGTC	1 cut(s)	1388
BpiI	GAAGAC	1 cut(s)	1497
BpmI	CTGGAG	1 cut(s)	812
Bpu1102I	GCTNAGC	1 cut(s)	61
BpuEI	CTTGAG	2 cut(s)	1445, 1483
BpuMI	CCSGG	1 cut(s)	1510
BsaHI	GRCGYC	4 cut(s)	427, 727, 1035, 1099
BsaI	GGTCTC	2 cut(s)	1229, 1472
BsaJI	CCNNGG	9 cut(s)	52, 174, 295, 325, 544, 617, 703, 829, 1371
Bsc4I	CCNNNNNNNGG	7 cut(s)	301, 421, 736, 1052, 1395, 1411, 1447
Bse118I	RCCGGY	2 cut(s)	764, 1052
Bse1I	ACTGG	4 cut(s)	66, 199, 1163, 1529
Bse3DI	GCAATG	2 cut(s)	504, 1332
BseBI	CCWGG	7 cut(s)	175, 188, 327, 724, 830, 1253, 1448
BseDI	CCNNGG	9 cut(s)	52, 174, 295, 325, 544, 617, 703, 829, 1371
BseGI	GGATG	2 cut(s)	196, 510
BseLI	CCNNNNNNNGG	7 cut(s)	301, 421, 736, 1052, 1395, 1411, 1447
BseMI	GCAATG	2 cut(s)	504, 1332
BseMII	CTCAG	3 cut(s)	95, 1108, 1123
BseNI	ACTGG	4 cut(s)	66, 199, 1163, 1529
BseRI	GAGGAG	3 cut(s)	773, 992, 1486
BseSI	GKGCMC	1 cut(s)	1402
BseXI	GCAGC	3 cut(s)	44, 469, 1212
BseYI	CCCAGC	1 cut(s)	819
Bsh1236I	CGCG	2 cut(s)	129, 486
BshNI	GGYRCC	2 cut(s)	726, 1098
BsiHKAI	GWGCWC	3 cut(s)	324, 984, 1496
BsiHKCI	CYCGRG	1 cut(s)	335
BsiSI	CCGG	5 cut(s)	519, 765, 1053, 1258, 1510
BslI	CCNNNNNNNGG	7 cut(s)	301, 421, 736, 1052, 1395, 1411, 1447
BsmAI	GTCTC	4 cut(s)	332, 767, 1229, 1472
Bso31I	GGTCTC	2 cut(s)	1229, 1472
BsoBI	CYCGRG	1 cut(s)	335
Bsp1286I	GDGCHC	6 cut(s)	135, 324, 984, 1402, 1496, 1534
Bsp143I	GATC	3 cut(s)	117, 165, 899
Bsp1720I	GCTNAGC	1 cut(s)	61
Bsp19I	CCATGG	1 cut(s)	1371
BspACI	CCGC	8 cut(s)	127, 142, 412, 516, 823, 1046, 1105, 1396
BspCNI	CTCAG	3 cut(s)	94, 1107, 1122
BspFNI	CGCG	2 cut(s)	129, 486
BspLI	GGNNCC	6 cut(s)	479, 728, 827, 1100, 1457, 1514
BspMI	ACCTGC	2 cut(s)	149, 536
BspPI	GGATC	2 cut(s)	112, 173
BspQI	GCTCTTC	1 cut(s)	1277
BspT107I	GGYRCC	2 cut(s)	726, 1098
BspTNI	GGTCTC	2 cut(s)	1229, 1472
BsrDI	GCAATG	2 cut(s)	504, 1332
BsrFI	RCCGGY	2 cut(s)	764, 1052
BsrI	ACTGG	4 cut(s)	66, 199, 1163, 1529
BssAI	RCCGGY	2 cut(s)	764, 1052
BssECI	CCNNGG	9 cut(s)	52, 174, 295, 325, 544, 617, 703, 829, 1371
BssMI	GATC	3 cut(s)	117, 165, 899
BssNI	GRCGYC	4 cut(s)	427, 727, 1035, 1099
BssT1I	CCWWGG	3 cut(s)	295, 617, 1371
Bst2UI	CCWGG	7 cut(s)	175, 188, 327, 724, 830, 1253, 1448
Bst4CI	ACNGT	5 cut(s)	467, 548, 957, 1442, 1483
Bst6I	CTCTTC	2 cut(s)	53, 1277
BstACI	GRCGYC	4 cut(s)	427, 727, 1035, 1099
BstAPI	GCANNNNNTGC	1 cut(s)	150
BstDEI	CTNAG	4 cut(s)	61, 81, 1094, 1109
BstDSI	CCRYGG	4 cut(s)	52, 544, 703, 1371
BstEII	GGTNACC	2 cut(s)	548, 638
BstF5I	GGATG	2 cut(s)	196, 510
BstFNI	CGCG	2 cut(s)	129, 486
BstH2I	RGCGCY	3 cut(s)	730, 1102, 1206
BstHHI	GCGC	5 cut(s)	206, 597, 729, 1101, 1205
BstKTI	GATC	3 cut(s)	120, 168, 902
BstMAI	GTCTC	4 cut(s)	332, 767, 1229, 1472
BstMBI	GATC	3 cut(s)	117, 165, 899
BstMWI	GCNNNNNNNGC	9 cut(s)	150, 212, 408, 515, 594, 601, 733, 1267, 1538
BstNI	CCWGG	7 cut(s)	175, 188, 327, 724, 830, 1253, 1448
BstNSI	RCATGY	1 cut(s)	1087
BstPAI	GACNNNNGTC	1 cut(s)	1388
BstPI	GGTNACC	2 cut(s)	548, 638
BstSCI	CCNGG	8 cut(s)	173, 186, 325, 722, 828, 1251, 1446, 1508
BstSFI	CTRYAG	2 cut(s)	1039, 1147
BstSLI	GKGCMC	1 cut(s)	1402
BstUI	CGCG	2 cut(s)	129, 486
BstV1I	GCAGC	3 cut(s)	44, 469, 1212
BstV2I	GAAGAC	1 cut(s)	1497
BstX2I	RGATCY	1 cut(s)	117
BstXI	CCANNNNNNTGG	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	1316
BtgI	CCRYGG	4 cut(s)	52, 544, 703, 1371
BtrI	CACGTC	1 cut(s)	1411
BtsCI	GGATG	2 cut(s)	196, 510
BtsIMutI	CAGTG	3 cut(s)	206, 1117, 1156
BveI	ACCTGC	2 cut(s)	149, 536
CfoI	GCGC	5 cut(s)	206, 597, 729, 1101, 1205
Cfr10I	RCCGGY	2 cut(s)	764, 1052
Cfr13I	GGNCC	8 cut(s)	379, 478, 720, 1255, 1383, 1414, 1438, 1512
CseI	GACGC	4 cut(s)	435, 475, 492, 800
CsiI	ACCWGGT	1 cut(s)	1251
Csp6I	GTAC	2 cut(s)	1330, 1465
CviAII	CATG	8 cut(s)	308, 973, 994, 1084, 1175, 1312, 1360, 1372
CviQI	GTAC	2 cut(s)	1330, 1465
DdeI	CTNAG	4 cut(s)	61, 81, 1094, 1109
DinI	GGCGCC	2 cut(s)	728, 1100
DpnI	GATC	3 cut(s)	119, 167, 901
DpnII	GATC	3 cut(s)	117, 165, 899
DraIII	CACNNNGTG	1 cut(s)	1297
DrdI	GACNNNNNNGTC	1 cut(s)	1253
DseDI	GACNNNNNNGTC	1 cut(s)	1253
EaeI	YGGCCR	2 cut(s)	3, 1029
Eam1104I	CTCTTC	2 cut(s)	53, 1277
EarI	CTCTTC	2 cut(s)	53, 1277
EciI	GGCGGA	1 cut(s)	1094
Ecl136II	GAGCTC	2 cut(s)	982, 1494
Eco130I	CCWWGG	3 cut(s)	295, 617, 1371
Eco24I	GRGCYC	4 cut(s)	135, 984, 1496, 1534
Eco31I	GGTCTC	2 cut(s)	1229, 1472
Eco47I	GGWCC	7 cut(s)	478, 720, 1255, 1383, 1414, 1438, 1512
Eco47III	AGCGCT	1 cut(s)	1204
Eco53kI	GAGCTC	2 cut(s)	982, 1494
Eco57I	CTGAAG	1 cut(s)	1063
Eco88I	CYCGRG	1 cut(s)	335
Eco91I	GGTNACC	2 cut(s)	548, 638
EcoICRI	GAGCTC	2 cut(s)	982, 1494
EcoO109I	RGGNCCY	1 cut(s)	1383
EcoO65I	GGTNACC	2 cut(s)	548, 638
EcoRII	CCWGG	7 cut(s)	173, 186, 325, 722, 828, 1251, 1446
EcoT14I	CCWWGG	3 cut(s)	295, 617, 1371
EcoT38I	GRGCYC	4 cut(s)	135, 984, 1496, 1534
EgeI	GGCGCC	2 cut(s)	728, 1100
EheI	GGCGCC	2 cut(s)	728, 1100
ErhI	CCWWGG	3 cut(s)	295, 617, 1371
FaeI	CATG	8 cut(s)	311, 976, 997, 1087, 1178, 1315, 1363, 1375
FatI	CATG	8 cut(s)	307, 972, 993, 1083, 1174, 1311, 1359, 1371
FauI	CCCGC	4 cut(s)	134, 523, 1053, 1389
FblI	GTMKAC	2 cut(s)	1038, 1182
Fnu4HI	GCNGC	5 cut(s)	58, 412, 458, 824, 1201
FokI	GGATG	2 cut(s)	203, 497
FriOI	GRGCYC	4 cut(s)	135, 984, 1496, 1534
Fsp4HI	GCNGC	5 cut(s)	58, 412, 458, 824, 1201
FspBI	CTAG	3 cut(s)	281, 461, 1206
GlaI	GCGC	5 cut(s)	205, 596, 728, 1100, 1204
GluI	GCNGC	5 cut(s)	58, 412, 458, 824, 1201
GsaI	CCCAGC	1 cut(s)	823
GsuI	CTGGAG	1 cut(s)	812
HaeII	RGCGCY	3 cut(s)	730, 1102, 1206
HapII	CCGG	5 cut(s)	519, 765, 1053, 1258, 1510
HgaI	GACGC	4 cut(s)	435, 475, 492, 800
HhaI	GCGC	5 cut(s)	206, 597, 729, 1101, 1205
Hin1I	GRCGYC	4 cut(s)	427, 727, 1035, 1099
Hin1II	CATG	8 cut(s)	311, 976, 997, 1087, 1178, 1315, 1363, 1375
Hin6I	GCGC	5 cut(s)	204, 595, 727, 1099, 1203
HinP1I	GCGC	5 cut(s)	204, 595, 727, 1099, 1203
HinfI	GANTC	5 cut(s)	170, 225, 350, 522, 535
HpaII	CCGG	5 cut(s)	519, 765, 1053, 1258, 1510
HphI	GGTGA	5 cut(s)	220, 461, 509, 517, 1231
Hpy166II	GTNNAC	4 cut(s)	286, 1039, 1183, 1222
Hpy188I	TCNGA	6 cut(s)	165, 222, 355, 364, 482, 1434
Hpy188III	TCNNGA	4 cut(s)	335, 772, 1342, 1535
Hpy8I	GTNNAC	4 cut(s)	286, 1039, 1183, 1222
Hpy99I	CGWCG	5 cut(s)	293, 486, 794, 1037, 1412
HpyAV	CCTTC	4 cut(s)	257, 488, 711, 1348
HpyCH4III	ACNGT	5 cut(s)	467, 548, 957, 1442, 1483
HpyCH4IV	ACGT	5 cut(s)	288, 874, 1035, 1188, 1410
HpyCH4V	TGCA	3 cut(s)	925, 940, 1303
HpyF10VI	GCNNNNNNNGC	9 cut(s)	150, 212, 408, 515, 594, 601, 733, 1267, 1538
HpyF3I	CTNAG	4 cut(s)	61, 81, 1094, 1109
HpySE526I	ACGT	5 cut(s)	288, 874, 1035, 1188, 1410
Hsp92I	GRCGYC	4 cut(s)	427, 727, 1035, 1099
Hsp92II	CATG	8 cut(s)	311, 976, 997, 1087, 1178, 1315, 1363, 1375
HspAI	GCGC	5 cut(s)	204, 595, 727, 1099, 1203
KasI	GGCGCC	2 cut(s)	726, 1098
KroI	GCCGGC	1 cut(s)	764
KroNI	GCCGGC	1 cut(s)	766
Kzo9I	GATC	3 cut(s)	117, 165, 899
LguI	GCTCTTC	1 cut(s)	1277
LmnI	GCTCC	5 cut(s)	327, 786, 831, 979, 1499
Lsp1109I	GCAGC	3 cut(s)	44, 469, 1212
LweI	GCATC	1 cut(s)	1528
MabI	ACCWGGT	1 cut(s)	1251
MaeI	CTAG	3 cut(s)	281, 461, 1206
MaeII	ACGT	5 cut(s)	288, 874, 1035, 1188, 1410
MaeIII	GTNAC	7 cut(s)	467, 523, 548, 638, 989, 1055, 1442
MalI	GATC	3 cut(s)	119, 167, 901
MboI	GATC	3 cut(s)	117, 165, 899
MboII	GAAGA	6 cut(s)	40, 359, 1009, 1120, 1264, 1497
MflI	RGATCY	1 cut(s)	117
MhlI	GDGCHC	6 cut(s)	135, 324, 984, 1402, 1496, 1534
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	623
MluI	ACGCGT	1 cut(s)	484
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	2 cut(s)	727, 1099
MlyI	GAGTC	3 cut(s)	179, 529, 531
MmeI	TCCRAC	2 cut(s)	143, 505
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	764
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	867, 1543
MslI	CAYNNNNRTG	1 cut(s)	998
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	109, 823
MspI	CCGG	5 cut(s)	519, 765, 1053, 1258, 1510
MspR9I	CCNGG	8 cut(s)	175, 188, 327, 724, 830, 1253, 1448, 1510
MvaI	CCWGG	7 cut(s)	175, 188, 327, 724, 830, 1253, 1448
MvnI	CGCG	2 cut(s)	129, 486
MwoI	GCNNNNNNNGC	9 cut(s)	150, 212, 408, 515, 594, 601, 733, 1267, 1538
NaeI	GCCGGC	1 cut(s)	766
NarI	GGCGCC	2 cut(s)	727, 1099
NciI	CCSGG	1 cut(s)	1510
NcoI	CCATGG	1 cut(s)	1371
NdeII	GATC	3 cut(s)	117, 165, 899
NgoMIV	GCCGGC	1 cut(s)	764
NlaIII	CATG	8 cut(s)	311, 976, 997, 1087, 1178, 1315, 1363, 1375
NlaIV	GGNNCC	6 cut(s)	479, 728, 827, 1100, 1457, 1514
NmeAIII	GCCGAG	1 cut(s)	1141
NmuCI	GTSAC	5 cut(s)	467, 523, 989, 1055, 1442
NspI	RCATGY	1 cut(s)	1087
PaeI	GCATGC	1 cut(s)	1087
PaqCI	CACCTGC	1 cut(s)	536
PciSI	GCTCTTC	1 cut(s)	1277
PcsI	WCGNNNNNNNCGW	2 cut(s)	885, 1230
PdiI	GCCGGC	1 cut(s)	766
PfeI	GAWTC	2 cut(s)	225, 350
PflFI	GACNNNGTC	3 cut(s)	884, 1253, 1412
PkrI	GCNGC	5 cut(s)	59, 413, 459, 825, 1202
PleI	GAGTC	3 cut(s)	178, 529, 530
PluTI	GGCGCC	2 cut(s)	730, 1102
PpsI	GAGTC	3 cut(s)	178, 529, 530
PpuMI	RGGWCCY	1 cut(s)	1383
PshAI	GACNNNNGTC	1 cut(s)	1388
Psp124BI	GAGCTC	2 cut(s)	984, 1496
Psp5II	RGGWCCY	1 cut(s)	1383
Psp6I	CCWGG	7 cut(s)	173, 186, 325, 722, 828, 1251, 1446
PspEI	GGTNACC	2 cut(s)	548, 638
PspFI	CCCAGC	1 cut(s)	819
PspGI	CCWGG	7 cut(s)	173, 186, 325, 722, 828, 1251, 1446
PspN4I	GGNNCC	6 cut(s)	479, 728, 827, 1100, 1457, 1514
PspPI	GGNCC	8 cut(s)	379, 478, 720, 1255, 1383, 1414, 1438, 1512
PspPPI	RGGWCCY	1 cut(s)	1383
PsrI	GAACNNNNNNTAC	2 cut(s)	1448, 1480
PsuI	RGATCY	1 cut(s)	117
PsyI	GACNNNGTC	3 cut(s)	884, 1253, 1412
PvuII	CAGCTG	1 cut(s)	109
RsaI	GTAC	2 cut(s)	1331, 1466
RsaNI	GTAC	2 cut(s)	1330, 1465
RseI	CAYNNNNRTG	1 cut(s)	998
SacI	GAGCTC	2 cut(s)	984, 1496
SapI	GCTCTTC	1 cut(s)	1277
SaqAI	TTAA	2 cut(s)	867, 1543
SatI	GCNGC	5 cut(s)	58, 412, 458, 824, 1201
Sau3AI	GATC	3 cut(s)	117, 165, 899
Sau96I	GGNCC	8 cut(s)	379, 478, 720, 1255, 1383, 1414, 1438, 1512
SchI	GAGTC	3 cut(s)	179, 529, 531
ScrFI	CCNGG	8 cut(s)	175, 188, 327, 724, 830, 1253, 1448, 1510
SduI	GDGCHC	6 cut(s)	135, 324, 984, 1402, 1496, 1534
SexAI	ACCWGGT	1 cut(s)	1251
SfaNI	GCATC	1 cut(s)	1528
SfcI	CTRYAG	2 cut(s)	1039, 1147
SfiI	GGCCNNNNNGGCC	1 cut(s)	408
SfoI	GGCGCC	2 cut(s)	728, 1100
SinI	GGWCC	7 cut(s)	478, 720, 1255, 1383, 1414, 1438, 1512
SmiMI	CAYNNNNRTG	1 cut(s)	998
SmlI	CTYRAG	2 cut(s)	1460, 1498
SmoI	CTYRAG	2 cut(s)	1460, 1498
SpeI	ACTAGT	1 cut(s)	280
SphI	GCATGC	1 cut(s)	1087
Sse9I	AATT	1 cut(s)	623
SsiI	CCGC	8 cut(s)	127, 142, 412, 516, 823, 1046, 1105, 1396
SspDI	GGCGCC	2 cut(s)	726, 1098
SspMI	CTAG	3 cut(s)	281, 461, 1206
SstI	GAGCTC	2 cut(s)	984, 1496
StyD4I	CCNGG	8 cut(s)	173, 186, 325, 722, 828, 1251, 1446, 1508
StyI	CCWWGG	3 cut(s)	295, 617, 1371
TaaI	ACNGT	5 cut(s)	467, 548, 957, 1442, 1483
TaiI	ACGT	5 cut(s)	291, 877, 1038, 1191, 1413
TaqI	TCGA	5 cut(s)	168, 771, 804, 879, 888
TaqII	GACCGA	1 cut(s)	1361
TasI	AATT	1 cut(s)	623
TatI	WGTACW	2 cut(s)	1329, 1464
TauI	GCSGC	2 cut(s)	414, 826
TfiI	GAWTC	2 cut(s)	225, 350
Tru1I	TTAA	2 cut(s)	867, 1543
Tru9I	TTAA	2 cut(s)	867, 1543
TscAI	CASTG	3 cut(s)	206, 1117, 1163
TseFI	GTSAC	5 cut(s)	467, 523, 989, 1055, 1442
TseI	GCWGC	3 cut(s)	57, 457, 1200
Tsp45I	GTSAC	5 cut(s)	467, 523, 989, 1055, 1442
TspDTI	ATGAA	6 cut(s)	975, 1010, 1016, 1191, 1264, 1379
TspGWI	ACGGA	2 cut(s)	1335, 1378
TspRI	CASTG	3 cut(s)	206, 1117, 1163
Tth111I	GACNNNGTC	3 cut(s)	884, 1253, 1412
VpaK11BI	GGWCC	7 cut(s)	478, 720, 1255, 1383, 1414, 1438, 1512
XapI	RAATTY	1 cut(s)	623
XceI	RCATGY	1 cut(s)	1087
XmiI	GTMKAC	2 cut(s)	1038, 1182
XspI	CTAG	3 cut(s)	281, 461, 1206
ZraI	GACGTC	1 cut(s)	1036

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.