Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Forward (+)

21337970 .. 21338893

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g18380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGACGAAGTCTTTGGTGTTTTCTCTTTGCTTGCTTCTTGTTTTCAATGGCTGCTTAGCAGCACGACAGCAGTCCCAGCAGCAGGGCAAACAGAATGAGTGTCAGCTCAACCAGCTCCAAGCTCGGGAACCTAGCAACAACATTAGGGCGGAAGCCGGGCAGATCGAGACATGGAACCACAACGACGATGACTTCCAGTGCGCTGGTGTCGCCGCTGAGAGAATCACCATCGAGCGCAACGGCCTTCACTTGCCTGCCTACTCCAACGCCCCTCAACTCATCTACGTCGTCCAAGGTAGTGGTGTTCTAGGAGTCGCTTTCCCTGGGTGCCCTGAGACATTCGAGGAGTATAAGGACCAATCTCAGCAGCAATTCCAGAGAGGCGGCCAAGAGCAGCGTGAACAACAGGAACAACAAGAAGAGCAGCAGAGACGTCGGCAAGAGCAACAGGGACAACAAGGACAGCGAGGCCAGCAGGAACAGGAGCAATCGCGCCACCAGCAAGGCCAACAAGGGCGGCAACAAGAAGGCCAGCAAGGCCAACAAGGGCGGCAACAAGAAGGCCAGCAAGGCCAGCAAGGTCAGCAAGAGCAGCAAGACCGCCACCAGAAGGTCCGCCGCATCAGGGCTGGTGATGTCATTGTCATCCCCGCCGGGGTCGCCTTCTGGACCTACAATGACGGCGACCAGGAGCTTGTTAAAGTCAGCCTCCTCGATGTCAGCAACGACCACAACCAGCTAGACCAAAACCCTAGGGTACTATTAACGTGCTTAATTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

261

Amino Acids

29.6

Weight (kDa)

5.22

Isoelectric Point (pI)

75.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	40 - 246	9.4e-27	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	436
AccB1I	GGYRCC	1 cut(s)	327
AccII	CGCG	1 cut(s)	493
AciI	CCGC	9 cut(s)	149, 213, 384, 517, 550, 601, 616, 619, 651
AcoI	YGGCCR	1 cut(s)	385
AcyI	GRCGYC	1 cut(s)	433
AfaI	GTAC	1 cut(s)	759
AfiI	CCNNNNNNNGG	5 cut(s)	82, 124, 610, 625, 655
AgsI	TTSAA	1 cut(s)	46
AjnI	CCWGG	2 cut(s)	322, 687
AluBI	AGCT	5 cut(s)	106, 115, 122, 694, 739
AluI	AGCT	5 cut(s)	106, 115, 122, 694, 739
Alw26I	GTCTC	3 cut(s)	161, 329, 424
Ama87I	CYCGRG	1 cut(s)	123
AoxI	GGCC	8 cut(s)	241, 385, 469, 505, 529, 538, 562, 571
ApeKI	GCWGC	7 cut(s)	51, 59, 79, 367, 394, 424, 592
ArsI	GACNNNNNNTTYG	1 cut(s)	27
AspA2I	CCTAGG	1 cut(s)	752
AspLEI	GCGC	3 cut(s)	203, 237, 495
AspS9I	GGNCC	3 cut(s)	355, 613, 669
AsuC2I	CCSGG	2 cut(s)	157, 655
AsuHPI	GGTGA	2 cut(s)	217, 644
AvaI	CYCGRG	1 cut(s)	123
AvaII	GGWCC	3 cut(s)	355, 613, 669
AvrII	CCTAGG	1 cut(s)	752
BaeGI	GKGCMC	1 cut(s)	332
BanI	GGYRCC	1 cut(s)	327
BbvI	GCAGC	7 cut(s)	38, 71, 91, 379, 406, 436, 604
BccI	CCATC	1 cut(s)	236
BceAI	ACGGC	2 cut(s)	256, 697
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BciT130I	CCWGG	2 cut(s)	324, 689
BcnI	CCSGG	2 cut(s)	157, 655
BcoDI	GTCTC	3 cut(s)	161, 329, 424
BfaI	CTAG	4 cut(s)	132, 308, 740, 753
BglI	GCCNNNNNGGC	2 cut(s)	537, 570
BlnI	CCTAGG	1 cut(s)	752
BlpI	GCTNAGC	1 cut(s)	55
Bme1390I	CCNGG	4 cut(s)	157, 324, 655, 689
Bme18I	GGWCC	3 cut(s)	355, 613, 669
BmeT110I	CYCGRG	1 cut(s)	123
BmgT120I	GGNCC	3 cut(s)	355, 613, 669
BmiI	GGNNCC	3 cut(s)	129, 176, 329
BmrFI	CCNGG	4 cut(s)	157, 324, 655, 689
BmsI	GCATC	1 cut(s)	630
BoxI	GACNNNNGTC	1 cut(s)	70
Bpu1102I	GCTNAGC	1 cut(s)	55
BpuMI	CCSGG	2 cut(s)	157, 655
BsaHI	GRCGYC	1 cut(s)	433
BsaJI	CCNNGG	5 cut(s)	292, 322, 323, 654, 752
Bsc4I	CCNNNNNNNGG	5 cut(s)	82, 124, 610, 625, 655
Bse1I	ACTGG	1 cut(s)	196
BseBI	CCWGG	2 cut(s)	324, 689
BseDI	CCNNGG	5 cut(s)	292, 322, 323, 654, 752
BseGI	GGATG	1 cut(s)	645
BseLI	CCNNNNNNNGG	5 cut(s)	82, 124, 610, 625, 655
BseMII	CTCAG	3 cut(s)	207, 324, 377
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	2 cut(s)	359, 701
BseSI	GKGCMC	1 cut(s)	332
BseXI	GCAGC	7 cut(s)	38, 71, 91, 379, 406, 436, 604
BseYI	CCCAGC	1 cut(s)	75
Bsh1236I	CGCG	1 cut(s)	493
BshFI	GGCC	8 cut(s)	243, 387, 471, 507, 531, 540, 564, 573
BshNI	GGYRCC	1 cut(s)	327
BsiHKCI	CYCGRG	1 cut(s)	123
BsiSI	CCGG	2 cut(s)	156, 654
BslFI	GGGAC	2 cut(s)	58, 465
BslI	CCNNNNNNNGG	5 cut(s)	82, 124, 610, 625, 655
BsmAI	GTCTC	3 cut(s)	161, 329, 424
BsmBI	CGTCTC	1 cut(s)	424
BsmFI	GGGAC	2 cut(s)	58, 465
BsnI	GGCC	8 cut(s)	243, 387, 471, 507, 531, 540, 564, 573
BsoBI	CYCGRG	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp143I	GATC	1 cut(s)	162
Bsp1720I	GCTNAGC	1 cut(s)	55
BspACI	CCGC	9 cut(s)	149, 213, 384, 517, 550, 601, 616, 619, 651
BspANI	GGCC	8 cut(s)	243, 387, 471, 507, 531, 540, 564, 573
BspCNI	CTCAG	3 cut(s)	208, 325, 376
BspFNI	CGCG	1 cut(s)	493
BspLI	GGNNCC	3 cut(s)	129, 176, 329
BspQI	GCTCTTC	1 cut(s)	414
BspT107I	GGYRCC	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	196
BssECI	CCNNGG	5 cut(s)	292, 322, 323, 654, 752
BssMI	GATC	1 cut(s)	162
BssNI	GRCGYC	1 cut(s)	433
BssT1I	CCWWGG	2 cut(s)	292, 752
Bst2UI	CCWGG	2 cut(s)	324, 689
Bst6I	CTCTTC	1 cut(s)	414
BstACI	GRCGYC	1 cut(s)	433
BstC8I	GCNNGC	6 cut(s)	32, 255, 473, 533, 566, 575
BstDEI	CTNAG	4 cut(s)	55, 216, 333, 363
BstF5I	GGATG	1 cut(s)	645
BstFNI	CGCG	1 cut(s)	493
BstHHI	GCGC	3 cut(s)	203, 237, 495
BstKTI	GATC	1 cut(s)	165
BstMAI	GTCTC	3 cut(s)	161, 329, 424
BstMBI	GATC	1 cut(s)	162
BstNI	CCWGG	2 cut(s)	324, 689
BstPAI	GACNNNNGTC	1 cut(s)	70
BstSCI	CCNGG	4 cut(s)	155, 322, 653, 687
BstSLI	GKGCMC	1 cut(s)	332
BstUI	CGCG	1 cut(s)	493
BstV1I	GCAGC	7 cut(s)	38, 71, 91, 379, 406, 436, 604
BstXI	CCANNNNNNTGG	2 cut(s)	203, 299
BsuRI	GGCC	8 cut(s)	243, 387, 471, 507, 531, 540, 564, 573
BtsCI	GGATG	1 cut(s)	645
BtsIMutI	CAGTG	1 cut(s)	203
Cac8I	GCNNGC	6 cut(s)	32, 255, 473, 533, 566, 575
CfoI	GCGC	3 cut(s)	203, 237, 495
Cfr13I	GGNCC	3 cut(s)	355, 613, 669
Csp6I	GTAC	1 cut(s)	758
CviAII	CATG	1 cut(s)	171
CviQI	GTAC	1 cut(s)	758
DdeI	CTNAG	4 cut(s)	55, 216, 333, 363
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
EaeI	YGGCCR	1 cut(s)	385
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
EciI	GGCGGA	2 cut(s)	164, 605
Eco130I	CCWWGG	2 cut(s)	292, 752
Eco47I	GGWCC	3 cut(s)	355, 613, 669
Eco88I	CYCGRG	1 cut(s)	123
EcoRII	CCWGG	2 cut(s)	322, 687
EcoT14I	CCWWGG	2 cut(s)	292, 752
ErhI	CCWWGG	2 cut(s)	292, 752
Esp3I	CGTCTC	1 cut(s)	424
FaeI	CATG	1 cut(s)	174
FaiI	YATR	2 cut(s)	172, 351
FaqI	GGGAC	2 cut(s)	58, 465
FatI	CATG	1 cut(s)	170
FauI	CCCGC	1 cut(s)	658
FokI	GGATG	1 cut(s)	632
FspBI	CTAG	4 cut(s)	132, 308, 740, 753
GlaI	GCGC	3 cut(s)	202, 236, 494
GsaI	CCCAGC	1 cut(s)	79
HaeIII	GGCC	8 cut(s)	243, 387, 471, 507, 531, 540, 564, 573
HapII	CCGG	2 cut(s)	156, 654
HhaI	GCGC	3 cut(s)	203, 237, 495
Hin1I	GRCGYC	1 cut(s)	433
Hin1II	CATG	1 cut(s)	174
Hin6I	GCGC	3 cut(s)	201, 235, 493
HinP1I	GCGC	3 cut(s)	201, 235, 493
HinfI	GANTC	2 cut(s)	222, 312
HpaII	CCGG	2 cut(s)	156, 654
HphI	GGTGA	2 cut(s)	217, 644
Hpy166II	GTNNAC	1 cut(s)	401
Hpy188III	TCNNGA	4 cut(s)	125, 166, 376, 667
Hpy8I	GTNNAC	1 cut(s)	401
Hpy99I	CGWCG	3 cut(s)	188, 290, 438
HpyAV	CCTTC	5 cut(s)	254, 521, 554, 604, 673
HpyCH4IV	ACGT	3 cut(s)	285, 433, 767
HpyF3I	CTNAG	4 cut(s)	55, 216, 333, 363
HpySE526I	ACGT	3 cut(s)	285, 433, 767
Hsp92I	GRCGYC	1 cut(s)	433
Hsp92II	CATG	1 cut(s)	174
HspAI	GCGC	3 cut(s)	201, 235, 493
Kzo9I	GATC	1 cut(s)	162
LguI	GCTCTTC	1 cut(s)	414
LmnI	GCTCC	3 cut(s)	120, 484, 691
Lsp1109I	GCAGC	7 cut(s)	38, 71, 91, 379, 406, 436, 604
LweI	GCATC	1 cut(s)	630
MaeI	CTAG	4 cut(s)	132, 308, 740, 753
MaeII	ACGT	3 cut(s)	285, 433, 767
MalI	GATC	1 cut(s)	164
MboI	GATC	1 cut(s)	162
MboII	GAAGA	1 cut(s)	431
MhlI	GDGCHC	1 cut(s)	332
MluCI	AATT	2 cut(s)	371, 774
MlyI	GAGTC	1 cut(s)	321
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	6 cut(s)	282, 337, 374, 461, 719, 722
MseI	TTAA	3 cut(s)	699, 764, 773
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	2 cut(s)	156, 654
MspR9I	CCNGG	4 cut(s)	157, 324, 655, 689
MvaI	CCWGG	2 cut(s)	324, 689
MvnI	CGCG	1 cut(s)	493
NciI	CCSGG	2 cut(s)	157, 655
NdeII	GATC	1 cut(s)	162
NlaIII	CATG	1 cut(s)	174
NlaIV	GGNNCC	3 cut(s)	129, 176, 329
PasI	CCCWGGG	1 cut(s)	323
PciSI	GCTCTTC	1 cut(s)	414
PfeI	GAWTC	1 cut(s)	222
PflFI	GACNNNGTC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
PshAI	GACNNNNGTC	1 cut(s)	70
Psp6I	CCWGG	2 cut(s)	322, 687
PspFI	CCCAGC	1 cut(s)	75
PspGI	CCWGG	2 cut(s)	322, 687
PspN4I	GGNNCC	3 cut(s)	129, 176, 329
PspPI	GGNCC	3 cut(s)	355, 613, 669
PsyI	GACNNNGTC	1 cut(s)	7
RsaI	GTAC	1 cut(s)	759
RsaNI	GTAC	1 cut(s)	758
SapI	GCTCTTC	1 cut(s)	414
SaqAI	TTAA	3 cut(s)	699, 764, 773
Sau3AI	GATC	1 cut(s)	162
Sau96I	GGNCC	3 cut(s)	355, 613, 669
SchI	GAGTC	1 cut(s)	321
ScrFI	CCNGG	4 cut(s)	157, 324, 655, 689
SduI	GDGCHC	1 cut(s)	332
SfaNI	GCATC	1 cut(s)	630
SfiI	GGCCNNNNNGGCC	2 cut(s)	537, 570
SinI	GGWCC	3 cut(s)	355, 613, 669
Sse9I	AATT	2 cut(s)	371, 774
SsiI	CCGC	9 cut(s)	149, 213, 384, 517, 550, 601, 616, 619, 651
SspMI	CTAG	4 cut(s)	132, 308, 740, 753
StyD4I	CCNGG	4 cut(s)	155, 322, 653, 687
StyI	CCWWGG	2 cut(s)	292, 752
TaiI	ACGT	3 cut(s)	288, 436, 770
TaqI	TCGA	4 cut(s)	165, 231, 342, 714
TasI	AATT	2 cut(s)	371, 774
TauI	GCSGC	5 cut(s)	215, 387, 520, 553, 621
TfiI	GAWTC	1 cut(s)	222
Tru1I	TTAA	3 cut(s)	699, 764, 773
Tru9I	TTAA	3 cut(s)	699, 764, 773
TscAI	CASTG	1 cut(s)	203
TseI	GCWGC	7 cut(s)	51, 59, 79, 367, 394, 424, 592
TspRI	CASTG	1 cut(s)	203
Tth111I	GACNNNGTC	1 cut(s)	7
VpaK11BI	GGWCC	3 cut(s)	355, 613, 669
XmaJI	CCTAGG	1 cut(s)	752
XspI	CTAG	4 cut(s)	132, 308, 740, 753
ZraI	GACGTC	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.