Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Forward (+)

50234931 .. 50239119

Gene Structure 4189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG303800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1689 bp

ATGGCTAAGCCTATAGCTCTCGCCTTTTCTCTTTGCTTGCTTGTCTTCTTCCACAGCTGCTTAGCAGCTCGCCAACAATCTCGGTCGAGCCAGCAGAATGAGTGCCAACTAGATCAGCTCCAAGCCCGCGAACCTGATAACCGCATTGAGACTGAAGCGGGTAGGATTGAGTCCTGGGACTACAACCGGGACGACTTCCAGTGTGCTGGTGTCGCCGTTCAACGAATTACCATTGAAAGAAATGGCCTTCACTTGCCTTCTTACACCCACGCTCCACAACTCACTTATGTCGTCCAAGGCAATGGTTTTCTATCAACTGTTTTCCCTGGCTGTCCTGAAACTTTTGAAGAAACTGAGCAATCTGATGAAGAACAACAAGGCCAGCAAGGGCGCCCCGGACAGCAAGGTCGCGGACAACAAGAGTATGAGCAGCAACAACAACAACAACAAGGCCATGGACAACAAGGTCGACAAGGCCGTGGACAGCAAGGTCGTCAGAGACAACAAGGGCAGCAAGGCCAACAGGGACAAGAGAGCTTCGAACAGCTAGACAGACACCAGAAGGTTCGACGCATCAGAGAAGGTGATGTGATTGCTATTCCTGCTGGAGTCACTTACTGGTCCTACAACGACGGTGACCAACCTCTTGTTGCTGTCAATCTTCTTGATATCGGCAACCAACAAAACCAGCTTGACCGAAACCCCAGGAGATTCTATCTTGCTGGTAACCCACAAGATGAGTTTAACCAACAAGGGCAAAGCCAGAGTCGACGGGGCCAGCAAGGACGTGGACAACAAGGGCAAGGCCAAAGTCAATGGGACCAGGACCAGCAACAGCAACAGCATGGTGGGAGGAGCAGGCACCAGCAACAACAACAAGGAAACAACAACAACAACATCTTCGCCGGCTTCAACACACAGCTTCTCGCCGACGCTCTGAACATCGATCAACAGACTGCCCAGCAGCTTCAGGGACAAAACGACAACAGACCCCAAATTGTGAGAGTTAGAGGACGTCTTGATTTCATCGAACCACCACGATCACAACAGGAGGAAAGACAACAACAGGGAATACAGAGACAACAGGGACAACAAGGACAGAATGGTTTTGAGGAGACATTCTGTAACTTCAGGATCAGAGAGAATATTGGCAGGCCTTCACGCGCCGACGTCTTCAGTCCCCAAGCTGGTCGCATCAGCACCCTCAACAGCTTTAAGTTGCCTATTCTCAGGTACCTTGACCTCAGCGCTGAGAGAGGCTTCTTCTACAATAATGCTATCTACAGTCCTCACTGGAACTTGAACGCCCATGAAGTCTACTACGTCATTAGAGGTAGTGCTAGGGTTCAGGTTGTGAATGACAATGGCCAGGCCATCTTGGACAATGAGGTCCGCCAGGGACAGCTCTTCATAGTGCCACAGAACCATGCAGTGTTGCAGAAGGCTAGCAACAATGGATACGAGTACATTGCTTTCAAGACCCAAGACAATGCTAAGATTAACACTCTTGCCGGCCGGACCTCAGTCTTGCGGGCACTCCCCGACGTGGTCCTCGCTAACGCGTACCAGATTGATCGACAACAGGCAAGGACTCTCAAGTACAACAGGCAGGAGACTGTTGCTTTGAGCTCATCAAGGTCTTCTCGATCCCAGAGGAACTGGTGGGATATTGCTGAAATGTTAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

562

Amino Acids

64.22

Weight (kDa)

7.68

Isoelectric Point (pI)

63.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	41 - 244	3.3e-24	Cupin
Cupin_1	PF00190	382 - 529	3e-40	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	4 cut(s)	405, 465, 489, 1388
AatII	GACGTC	2 cut(s)	1018, 1173
Acc65I	GGTACC	1 cut(s)	1233
AccB1I	GGYRCC	3 cut(s)	390, 861, 1233
AccI	GTMKAC	3 cut(s)	469, 769, 1317
AccII	CGCG	4 cut(s)	129, 411, 1164, 1562
AciI	CCGC	6 cut(s)	127, 142, 158, 411, 1393, 1531
AclWI	GGATC	2 cut(s)	1142, 1641
AcoI	YGGCCR	2 cut(s)	1366, 1513
AcuI	CTGAAG	4 cut(s)	174, 953, 1114, 1159
AcyI	GRCGYC	3 cut(s)	391, 1015, 1170
AfaI	GTAC	4 cut(s)	1235, 1466, 1565, 1601
AfeI	AGCGCT	1 cut(s)	1249
AfiI	CCNNNNNNNGG	2 cut(s)	1187, 1546
AflIII	ACRYGT	1 cut(s)	1560
AgsI	TTSAA	6 cut(s)	221, 236, 347, 913, 1303, 1477
AjiI	CACGTC	2 cut(s)	788, 1546
AjnI	CCWGG	6 cut(s)	173, 325, 704, 822, 1368, 1395
Alw21I	GWGCWC	1 cut(s)	1631
Alw26I	GTCTC	5 cut(s)	143, 493, 1072, 1109, 1607
AlwI	GGATC	2 cut(s)	1142, 1641
Aor51HI	AGCGCT	1 cut(s)	1249
ApeKI	GCWGC	5 cut(s)	57, 65, 430, 511, 964
ArsI	GACNNNNNNTTYG	4 cut(s)	751, 783, 1606, 1638
Asp718I	GGTACC	1 cut(s)	1233
AspLEI	GCGC	3 cut(s)	393, 1166, 1250
AspS9I	GGNCC	7 cut(s)	621, 775, 820, 826, 1390, 1518, 1549
AsuC2I	CCSGG	2 cut(s)	188, 396
AsuHPI	GGTGA	2 cut(s)	596, 647
AsuII	TTCGAA	1 cut(s)	540
AsuNHI	GCTAGC	1 cut(s)	1445
AvaII	GGWCC	6 cut(s)	621, 820, 826, 1390, 1518, 1549
BaeGI	GKGCMC	1 cut(s)	1537
BalI	TGGCCA	1 cut(s)	1368
BanI	GGYRCC	3 cut(s)	390, 861, 1233
BanII	GRGCYC	1 cut(s)	1631
BbsI	GAAGAC	3 cut(s)	37, 1165, 1632
Bbv12I	GWGCWC	1 cut(s)	1631
BbvCI	CCTCAGC	1 cut(s)	1244
BbvI	GCAGC	5 cut(s)	44, 77, 442, 523, 976
BccI	CCATC	1 cut(s)	1382
BceAI	ACGGC	2 cut(s)	200, 462
BcgI	CGANNNNNNTGC	2 cut(s)	1451, 1485
BciT130I	CCWGG	6 cut(s)	175, 327, 706, 824, 1370, 1397
BciVI	GTATCC	1 cut(s)	1451
BcnI	CCSGG	2 cut(s)	188, 396
BcoDI	GTCTC	5 cut(s)	143, 493, 1072, 1109, 1607
BfaI	CTAG	4 cut(s)	110, 548, 1341, 1446
BfmI	CTRYAG	2 cut(s)	12, 1282
BfoI	RGCGCY	2 cut(s)	394, 1251
BfuI	GTATCC	1 cut(s)	1451
BisI	GCNGC	5 cut(s)	58, 66, 431, 512, 965
BlpI	GCTNAGC	2 cut(s)	6, 61
BlsI	GCNGC	5 cut(s)	59, 67, 432, 513, 966
Bme1390I	CCNGG	8 cut(s)	175, 188, 327, 396, 706, 824, 1370, 1397
Bme18I	GGWCC	6 cut(s)	621, 820, 826, 1390, 1518, 1549
BmgBI	CACGTC	2 cut(s)	788, 1546
BmgT120I	GGNCC	7 cut(s)	621, 775, 820, 826, 1390, 1518, 1549
BmiI	GGNNCC	5 cut(s)	392, 776, 821, 863, 1235
BmrFI	CCNGG	8 cut(s)	175, 188, 327, 396, 706, 824, 1370, 1397
BmsI	GCATC	2 cut(s)	582, 1203
BmtI	GCTAGC	1 cut(s)	1449
BoxI	GACNNNNGTC	1 cut(s)	1523
BpiI	GAAGAC	3 cut(s)	37, 1165, 1632
BpmI	CTGGAG	1 cut(s)	627
Bpu10I	CCTNAGC	1 cut(s)	1244
Bpu1102I	GCTNAGC	2 cut(s)	6, 61
Bpu14I	TTCGAA	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	1580
BpuMI	CCSGG	2 cut(s)	188, 396
Bsa29I	ATCGAT	1 cut(s)	945
BsaHI	GRCGYC	3 cut(s)	391, 1015, 1170
BsaJI	CCNNGG	8 cut(s)	174, 295, 325, 394, 454, 478, 704, 1396
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bsc4I	CCNNNNNNNGG	2 cut(s)	1187, 1546
Bse118I	RCCGGY	2 cut(s)	905, 1511
Bse1I	ACTGG	4 cut(s)	199, 623, 1298, 1664
Bse3DI	GCAATG	2 cut(s)	307, 1467
BseBI	CCWGG	6 cut(s)	175, 327, 706, 824, 1370, 1397
BseCI	ATCGAT	1 cut(s)	945
BseDI	CCNNGG	8 cut(s)	174, 295, 325, 394, 454, 478, 704, 1396
BseLI	CCNNNNNNNGG	2 cut(s)	1187, 1546
BseMI	GCAATG	2 cut(s)	307, 1467
BseMII	CTCAG	5 cut(s)	345, 1242, 1243, 1258, 1536
BseNI	ACTGG	4 cut(s)	199, 623, 1298, 1664
BseRI	GAGGAG	2 cut(s)	868, 1127
BseSI	GKGCMC	1 cut(s)	1537
BseX3I	CGGCCG	1 cut(s)	1513
BseXI	GCAGC	5 cut(s)	44, 77, 442, 523, 976
BseYI	CCCAGC	1 cut(s)	960
Bsh1236I	CGCG	4 cut(s)	129, 411, 1164, 1562
Bsh1285I	CGRYCG	2 cut(s)	86, 1516
BshNI	GGYRCC	3 cut(s)	390, 861, 1233
BshVI	ATCGAT	1 cut(s)	945
BsiEI	CGRYCG	2 cut(s)	86, 1516
BsiHKAI	GWGCWC	1 cut(s)	1631
BsiSI	CCGG	5 cut(s)	187, 396, 906, 1512, 1516
BslFI	GGGAC	8 cut(s)	191, 203, 540, 833, 987, 1101, 1164, 1413
BslI	CCNNNNNNNGG	2 cut(s)	1187, 1546
BsmAI	GTCTC	5 cut(s)	143, 493, 1072, 1109, 1607
BsmFI	GGGAC	8 cut(s)	191, 203, 540, 833, 987, 1101, 1164, 1413
Bsp119I	TTCGAA	1 cut(s)	540
Bsp1286I	GDGCHC	2 cut(s)	1537, 1631
Bsp143I	GATC	6 cut(s)	112, 946, 1040, 1134, 1573, 1646
Bsp1720I	GCTNAGC	2 cut(s)	6, 61
Bsp19I	CCATGG	1 cut(s)	454
BspACI	CCGC	6 cut(s)	127, 142, 158, 411, 1393, 1531
BspCNI	CTCAG	5 cut(s)	346, 1242, 1243, 1257, 1535
BspDI	ATCGAT	1 cut(s)	945
BspFNI	CGCG	4 cut(s)	129, 411, 1164, 1562
BspLI	GGNNCC	5 cut(s)	392, 776, 821, 863, 1235
BspOI	GCTAGC	1 cut(s)	1449
BspPI	GGATC	2 cut(s)	1142, 1641
BspQI	GCTCTTC	1 cut(s)	1412
BspT104I	TTCGAA	1 cut(s)	540
BspT107I	GGYRCC	3 cut(s)	390, 861, 1233
BsrDI	GCAATG	2 cut(s)	307, 1467
BsrFI	RCCGGY	2 cut(s)	905, 1511
BsrI	ACTGG	4 cut(s)	199, 623, 1298, 1664
BssAI	RCCGGY	2 cut(s)	905, 1511
BssECI	CCNNGG	8 cut(s)	174, 295, 325, 394, 454, 478, 704, 1396
BssMI	GATC	6 cut(s)	112, 946, 1040, 1134, 1573, 1646
BssNI	GRCGYC	3 cut(s)	391, 1015, 1170
BssT1I	CCWWGG	2 cut(s)	295, 454
Bst2UI	CCWGG	6 cut(s)	175, 327, 706, 824, 1370, 1397
Bst4CI	ACNGT	4 cut(s)	319, 635, 1286, 1618
Bst6I	CTCTTC	1 cut(s)	1412
BstACI	GRCGYC	3 cut(s)	391, 1015, 1170
BstBI	TTCGAA	1 cut(s)	540
BstDEI	CTNAG	8 cut(s)	6, 61, 354, 1229, 1244, 1251, 1494, 1522
BstDSI	CCRYGG	2 cut(s)	454, 478
BstEII	GGTNACC	2 cut(s)	635, 725
BstFNI	CGCG	4 cut(s)	129, 411, 1164, 1562
BstH2I	RGCGCY	2 cut(s)	394, 1251
BstHHI	GCGC	3 cut(s)	393, 1166, 1250
BstKTI	GATC	6 cut(s)	115, 949, 1043, 1137, 1576, 1649
BstMAI	GTCTC	5 cut(s)	143, 493, 1072, 1109, 1607
BstMBI	GATC	6 cut(s)	112, 946, 1040, 1134, 1573, 1646
BstMCI	CGRYCG	2 cut(s)	86, 1516
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 602
BstNI	CCWGG	6 cut(s)	175, 327, 706, 824, 1370, 1397
BstPAI	GACNNNNGTC	1 cut(s)	1523
BstPI	GGTNACC	2 cut(s)	635, 725
BstSCI	CCNGG	8 cut(s)	173, 186, 325, 394, 704, 822, 1368, 1395
BstSFI	CTRYAG	2 cut(s)	12, 1282
BstSLI	GKGCMC	1 cut(s)	1537
BstUI	CGCG	4 cut(s)	129, 411, 1164, 1562
BstV1I	GCAGC	5 cut(s)	44, 77, 442, 523, 976
BstV2I	GAAGAC	3 cut(s)	37, 1165, 1632
BstXI	CCANNNNNNTGG	2 cut(s)	206, 302
BstZI	CGGCCG	1 cut(s)	1513
Bsu15I	ATCGAT	1 cut(s)	945
BsuI	GTATCC	1 cut(s)	1451
BsuTUI	ATCGAT	1 cut(s)	945
BtgI	CCRYGG	2 cut(s)	454, 478
BtrI	CACGTC	2 cut(s)	788, 1546
BtsI	GCAGTG	1 cut(s)	1437
BtsIMutI	CAGTG	3 cut(s)	206, 1291, 1437
CfoI	GCGC	3 cut(s)	393, 1166, 1250
Cfr10I	RCCGGY	2 cut(s)	905, 1511
Cfr13I	GGNCC	7 cut(s)	621, 775, 820, 826, 1390, 1518, 1549
ClaI	ATCGAT	1 cut(s)	945
CseI	GACGC	2 cut(s)	579, 941
Csp6I	GTAC	4 cut(s)	1234, 1465, 1564, 1600
CviAII	CATG	4 cut(s)	455, 845, 1310, 1427
CviQI	GTAC	4 cut(s)	1234, 1465, 1564, 1600
DdeI	CTNAG	8 cut(s)	6, 61, 354, 1229, 1244, 1251, 1494, 1522
DinI	GGCGCC	1 cut(s)	392
DpnI	GATC	6 cut(s)	114, 948, 1042, 1136, 1575, 1648
DpnII	GATC	6 cut(s)	112, 946, 1040, 1134, 1573, 1646
DrdI	GACNNNNNNGTC	4 cut(s)	405, 465, 489, 1388
DseDI	GACNNNNNNGTC	4 cut(s)	405, 465, 489, 1388
EaeI	YGGCCR	2 cut(s)	1366, 1513
EagI	CGGCCG	1 cut(s)	1513
Eam1104I	CTCTTC	1 cut(s)	1412
EarI	CTCTTC	1 cut(s)	1412
EciI	GGCGGA	1 cut(s)	1382
Ecl136II	GAGCTC	1 cut(s)	1629
EclXI	CGGCCG	1 cut(s)	1513
Eco130I	CCWWGG	2 cut(s)	295, 454
Eco147I	AGGCCT	1 cut(s)	1156
Eco24I	GRGCYC	1 cut(s)	1631
Eco32I	GATATC	1 cut(s)	670
Eco47I	GGWCC	6 cut(s)	621, 820, 826, 1390, 1518, 1549
Eco47III	AGCGCT	1 cut(s)	1249
Eco52I	CGGCCG	1 cut(s)	1513
Eco53kI	GAGCTC	1 cut(s)	1629
Eco57I	CTGAAG	4 cut(s)	174, 953, 1114, 1159
Eco91I	GGTNACC	2 cut(s)	635, 725
EcoICRI	GAGCTC	1 cut(s)	1629
EcoO65I	GGTNACC	2 cut(s)	635, 725
EcoRII	CCWGG	6 cut(s)	173, 325, 704, 822, 1368, 1395
EcoRV	GATATC	1 cut(s)	670
EcoT14I	CCWWGG	2 cut(s)	295, 454
EcoT38I	GRGCYC	1 cut(s)	1631
EgeI	GGCGCC	1 cut(s)	392
EheI	GGCGCC	1 cut(s)	392
ErhI	CCWWGG	2 cut(s)	295, 454
FaeI	CATG	4 cut(s)	458, 848, 1313, 1430
FaiI	YATR	9 cut(s)	14, 288, 426, 456, 846, 1311, 1412, 1428, 1687
FaqI	GGGAC	8 cut(s)	191, 203, 540, 833, 987, 1101, 1164, 1413
FatI	CATG	4 cut(s)	454, 844, 1309, 1426
FauI	CCCGC	3 cut(s)	134, 151, 1524
FblI	GTMKAC	3 cut(s)	469, 769, 1317
Fnu4HI	GCNGC	5 cut(s)	58, 66, 431, 512, 965
FriOI	GRGCYC	1 cut(s)	1631
Fsp4HI	GCNGC	5 cut(s)	58, 66, 431, 512, 965
FspBI	CTAG	4 cut(s)	110, 548, 1341, 1446
GlaI	GCGC	3 cut(s)	392, 1165, 1249
GluI	GCNGC	5 cut(s)	58, 66, 431, 512, 965
GsaI	CCCAGC	1 cut(s)	964
GsuI	CTGGAG	1 cut(s)	627
HaeII	RGCGCY	2 cut(s)	394, 1251
HapII	CCGG	5 cut(s)	187, 396, 906, 1512, 1516
HgaI	GACGC	2 cut(s)	579, 941
HhaI	GCGC	3 cut(s)	393, 1166, 1250
Hin1I	GRCGYC	3 cut(s)	391, 1015, 1170
Hin1II	CATG	4 cut(s)	458, 848, 1313, 1430
Hin6I	GCGC	3 cut(s)	391, 1164, 1248
HinP1I	GCGC	3 cut(s)	391, 1164, 1248
HincII	GTYRAC	2 cut(s)	470, 770
HindII	GTYRAC	2 cut(s)	470, 770
HinfI	GANTC	5 cut(s)	170, 609, 711, 766, 1591
HpaII	CCGG	5 cut(s)	187, 396, 906, 1512, 1516
HphI	GGTGA	2 cut(s)	596, 647
Hpy166II	GTNNAC	5 cut(s)	470, 482, 770, 791, 1318
Hpy188I	TCNGA	5 cut(s)	364, 498, 578, 939, 1139
Hpy188III	TCNNGA	6 cut(s)	335, 665, 1019, 1132, 1477, 1644
Hpy8I	GTNNAC	5 cut(s)	470, 482, 770, 791, 1318
Hpy99I	CGWCG	6 cut(s)	573, 635, 774, 935, 1172, 1547
HpyAV	CCTTC	6 cut(s)	257, 267, 556, 575, 1167, 1435
HpyCH4III	ACNGT	4 cut(s)	319, 635, 1286, 1618
HpyCH4IV	ACGT	5 cut(s)	787, 1015, 1170, 1323, 1545
HpyCH4V	TGCA	2 cut(s)	1430, 1438
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 602
HpyF3I	CTNAG	8 cut(s)	6, 61, 354, 1229, 1244, 1251, 1494, 1522
HpySE526I	ACGT	5 cut(s)	787, 1015, 1170, 1323, 1545
Hsp92I	GRCGYC	3 cut(s)	391, 1015, 1170
Hsp92II	CATG	4 cut(s)	458, 848, 1313, 1430
HspAI	GCGC	3 cut(s)	391, 1164, 1248
KasI	GGCGCC	1 cut(s)	390
KpnI	GGTACC	1 cut(s)	1237
KroI	GCCGGC	2 cut(s)	905, 1511
KroNI	GCCGGC	2 cut(s)	907, 1513
Kzo9I	GATC	6 cut(s)	112, 946, 1040, 1134, 1573, 1646
LguI	GCTCTTC	1 cut(s)	1412
LmnI	GCTCC	3 cut(s)	123, 277, 855
Lsp1109I	GCAGC	5 cut(s)	44, 77, 442, 523, 976
LweI	GCATC	2 cut(s)	582, 1203
MaeI	CTAG	4 cut(s)	110, 548, 1341, 1446
MaeII	ACGT	5 cut(s)	787, 1015, 1170, 1323, 1545
MaeIII	GTNAC	4 cut(s)	610, 635, 725, 1124
MalI	GATC	6 cut(s)	114, 948, 1042, 1136, 1575, 1648
MboI	GATC	6 cut(s)	112, 946, 1040, 1134, 1573, 1646
MhlI	GDGCHC	2 cut(s)	1537, 1631
MlsI	TGGCCA	1 cut(s)	1368
MluCI	AATT	2 cut(s)	225, 996
MluI	ACGCGT	1 cut(s)	1560
MluNI	TGGCCA	1 cut(s)	1368
Mly113I	GGCGCC	1 cut(s)	391
MlyI	GAGTC	4 cut(s)	179, 618, 775, 1585
Mox20I	TGGCCA	1 cut(s)	1368
MroNI	GCCGGC	2 cut(s)	905, 1511
MscI	TGGCCA	1 cut(s)	1368
MseI	TTAA	3 cut(s)	744, 1215, 1500
Msp20I	TGGCCA	1 cut(s)	1368
MspA1I	CMGCKG	1 cut(s)	57
MspI	CCGG	5 cut(s)	187, 396, 906, 1512, 1516
MspR9I	CCNGG	8 cut(s)	175, 188, 327, 396, 706, 824, 1370, 1397
MvaI	CCWGG	6 cut(s)	175, 327, 706, 824, 1370, 1397
MvnI	CGCG	4 cut(s)	129, 411, 1164, 1562
MwoI	GCNNNNNNNGC	2 cut(s)	212, 602
NaeI	GCCGGC	2 cut(s)	907, 1513
NarI	GGCGCC	1 cut(s)	391
NciI	CCSGG	2 cut(s)	188, 396
NcoI	CCATGG	1 cut(s)	454
NdeII	GATC	6 cut(s)	112, 946, 1040, 1134, 1573, 1646
NgoMIV	GCCGGC	2 cut(s)	905, 1511
NheI	GCTAGC	1 cut(s)	1445
NlaIII	CATG	4 cut(s)	458, 848, 1313, 1430
NlaIV	GGNNCC	5 cut(s)	392, 776, 821, 863, 1235
NmuCI	GTSAC	2 cut(s)	610, 635
NspV	TTCGAA	1 cut(s)	540
PceI	AGGCCT	1 cut(s)	1156
PciSI	GCTCTTC	1 cut(s)	1412
PcsI	WCGNNNNNNNCGW	1 cut(s)	475
PdiI	GCCGGC	2 cut(s)	907, 1513
PfeI	GAWTC	1 cut(s)	711
PflFI	GACNNNGTC	1 cut(s)	1547
PkrI	GCNGC	5 cut(s)	59, 67, 432, 513, 966
PleI	GAGTC	4 cut(s)	178, 617, 774, 1585
PluTI	GGCGCC	1 cut(s)	394
PpsI	GAGTC	4 cut(s)	178, 617, 774, 1585
PshAI	GACNNNNGTC	1 cut(s)	1523
Psp124BI	GAGCTC	1 cut(s)	1631
Psp6I	CCWGG	6 cut(s)	173, 325, 704, 822, 1368, 1395
PspEI	GGTNACC	2 cut(s)	635, 725
PspFI	CCCAGC	1 cut(s)	960
PspGI	CCWGG	6 cut(s)	173, 325, 704, 822, 1368, 1395
PspN4I	GGNNCC	5 cut(s)	392, 776, 821, 863, 1235
PspPI	GGNCC	7 cut(s)	621, 775, 820, 826, 1390, 1518, 1549
PsyI	GACNNNGTC	1 cut(s)	1547
PvuII	CAGCTG	1 cut(s)	57
RsaI	GTAC	4 cut(s)	1235, 1466, 1565, 1601
RsaNI	GTAC	4 cut(s)	1234, 1465, 1564, 1600
SacI	GAGCTC	1 cut(s)	1631
SalI	GTCGAC	2 cut(s)	468, 768
SapI	GCTCTTC	1 cut(s)	1412
SaqAI	TTAA	3 cut(s)	744, 1215, 1500
SatI	GCNGC	5 cut(s)	58, 66, 431, 512, 965
Sau3AI	GATC	6 cut(s)	112, 946, 1040, 1134, 1573, 1646
Sau96I	GGNCC	7 cut(s)	621, 775, 820, 826, 1390, 1518, 1549
SchI	GAGTC	4 cut(s)	179, 618, 775, 1585
ScrFI	CCNGG	8 cut(s)	175, 188, 327, 396, 706, 824, 1370, 1397
SduI	GDGCHC	2 cut(s)	1537, 1631
SfaNI	GCATC	2 cut(s)	582, 1203
SfcI	CTRYAG	2 cut(s)	12, 1282
SfoI	GGCGCC	1 cut(s)	392
SfuI	TTCGAA	1 cut(s)	540
SinI	GGWCC	6 cut(s)	621, 820, 826, 1390, 1518, 1549
SmlI	CTYRAG	1 cut(s)	1595
SmoI	CTYRAG	1 cut(s)	1595
Sse9I	AATT	2 cut(s)	225, 996
SseBI	AGGCCT	1 cut(s)	1156
SsiI	CCGC	6 cut(s)	127, 142, 158, 411, 1393, 1531
SspDI	GGCGCC	1 cut(s)	390
SspI	AATATT	1 cut(s)	1147
SspMI	CTAG	4 cut(s)	110, 548, 1341, 1446
SstI	GAGCTC	1 cut(s)	1631
StuI	AGGCCT	1 cut(s)	1156
StyD4I	CCNGG	8 cut(s)	173, 186, 325, 394, 704, 822, 1368, 1395
StyI	CCWWGG	2 cut(s)	295, 454
TaaI	ACNGT	4 cut(s)	319, 635, 1286, 1618
TaiI	ACGT	5 cut(s)	790, 1018, 1173, 1326, 1548
TaqI	TCGA	9 cut(s)	86, 469, 540, 568, 769, 945, 1029, 1576, 1645
TaqII	GACCGA	2 cut(s)	72, 711
TasI	AATT	2 cut(s)	225, 996
TatI	WGTACW	2 cut(s)	1464, 1599
TfiI	GAWTC	1 cut(s)	711
Tru1I	TTAA	3 cut(s)	744, 1215, 1500
Tru9I	TTAA	3 cut(s)	744, 1215, 1500
TscAI	CASTG	3 cut(s)	206, 1298, 1437
TseFI	GTSAC	2 cut(s)	610, 635
TseI	GCWGC	5 cut(s)	57, 65, 430, 511, 964
Tsp45I	GTSAC	2 cut(s)	610, 635
TspDTI	ATGAA	4 cut(s)	381, 1015, 1326, 1399
TspRI	CASTG	3 cut(s)	206, 1298, 1437
Tth111I	GACNNNGTC	1 cut(s)	1547
VpaK11BI	GGWCC	6 cut(s)	621, 820, 826, 1390, 1518, 1549
XcmI	CCANNNNNNNNNTGG	1 cut(s)	785
XmiI	GTMKAC	3 cut(s)	469, 769, 1317
XspI	CTAG	4 cut(s)	110, 548, 1341, 1446
ZraI	GACGTC	2 cut(s)	1016, 1171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.