Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Reverse (-)

19933697 .. 19935577

Gene Structure 1881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00180580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1572 bp

ATGGCCAAGCATTTAGCTCTCGTTTTCTCTCTTTGCTTTCTTGTTCTCTTCAACGGCTGCTTAGCCAGTCGCCAACAATCTCAGTTCAGCCAGCAAAATGAGTGCCAGCTGAACCAGATCCAAGCCCGCGAGCCCGACAACCGCATTGAGTGCGAAGCAGGTCGGATCGAGTCCTGGGACTACAACCAGGATGACTTCCAGTGCGCTGGTGTCGCCGTTCAGAGAATCACCATTGAGAGCAACGGCCTTCACTTGCCTTCTTACACTAACACTCCACGACTAGTTTACGTCGTCCAAGGTAGGGGTCATGTAGGAATGGTGCTCCCTGGCTGTCCCGAGACTTTTGAAGAATCCGAGCAATCTGATGAGGAGCAACAGGGCCAGCAACAACAATGGCAAGGCCAACGAGGCCGCCAGCAACAGGGACGCCGACAGGGACAATTCGGCCAGCAAGGCCAACGGGGACAACAAGAGAGCTTTGAGCAGCTAGACCGTCACCAGAGGGTCCGACGCGTCAAGGAAGGTGATGTCATTGCCGTCCCCGCCGGAGTCACCTGCTGGACTCACAACCACGGTAACCAACCTCTTGTTTTCGTCAGTCTCTTTGATATGAGCAACGAGCGCAACCAGCTTGACCAAAACCCAAGGAAATTCTATCTTGCTGGTAACCCACAAGATGAGTTCAACCAACAAGGCCAAAGCCAATGGAGTCAACAAGGACAACAAGGCCGTGGACAACAAGGAAGGACCAGGCGCCAACAGCAGGGAAACAACAATAACAACATCTTTGCCGGCTTCGACACACAGCTTCTCGCCGACGCTCTCAACATCGACCAACAGACCGCCCAGCGGCTCCAGGGACAGAACGACAACAGGCCACAGATTGTTAGGGCTCAGGGACGTTTCGACTTTGTCGAGCCACCACGGTCACAGAGGGAGGAAAGACAAATGCAAGGACAACAAATGCAGGGACAACAAGGACAGTATGAACAGAATGGCATGGAGGAGCTCTTCTGCCACATGCAGATGAAACAGAACATCGGCAAACCTAAAATGGCCGACGTCTACAGCCCGCAAGCCGGTCGCATCAGCACCCTCAACAGCTTCAGCATGCCTATTCTCAGGCGCCTCCGCCTCAGTGCCGAGAGAGGCTTCTTCTACAACAACGCTATCTACAGCCCACATTGGAACTTGAACGCCCATGAAGTCTACTACGTCATCAGGGGCAGCGCTAGGGTTCAGGTGGTGAACGACAATGGCGAGACCATCTTGGACGACCAGGTCCGCCAGGGACAGCTCTTCATTGTGCCACAGAACCATGCCGTGTTGCAAAAGGCCATGAGCAACGGATACGAGTACATTGCCTTCAAGACCGATGACAATGCCATGATGAACACCATGGCTGGCAGGACCTCCGTCCTGCGGGCACTCCCCGACGTGGTCCTCGCCAACGCCTACCAGATGGACGGTGAGCAGGCAAGGAACCTCAAGTACAACAGGCAGGAGACCGTTGCTTTGAGCTCCTCAAGGTCTTCCCGGTCCCAGAGGAACTGGTGGGCTCTTGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

523

Amino Acids

59.94

Weight (kDa)

7.14

Isoelectric Point (pI)

57.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	41 - 224	2e-27	Cupin
Cupin_1	PF00190	346 - 493	7.3e-39	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	563
AasI	GACNNNNNNGTC	1 cut(s)	1280
AatII	GACGTC	1 cut(s)	1065
Acc36I	ACCTGC	2 cut(s)	149, 563
AccB1I	GGYRCC	2 cut(s)	753, 1125
AccI	GTMKAC	2 cut(s)	1065, 1209
AccII	CGCG	2 cut(s)	129, 513
AclWI	GGATC	2 cut(s)	112, 173
AcoI	YGGCCR	3 cut(s)	3, 445, 1056
AcsI	RAATTY	1 cut(s)	650
AcuI	CTGAAG	1 cut(s)	1090
AcyI	GRCGYC	4 cut(s)	427, 754, 1062, 1126
AfaI	GTAC	2 cut(s)	1358, 1493
AfeI	AGCGCT	1 cut(s)	1231
AfiI	CCNNNNNNNGG	7 cut(s)	301, 421, 763, 849, 1079, 1422, 1438
AflIII	ACRYGT	1 cut(s)	511
AgsI	TTSAA	5 cut(s)	52, 347, 685, 1195, 1369
AhlI	ACTAGT	1 cut(s)	280
AjiI	CACGTC	1 cut(s)	1438
AjnI	CCWGG	7 cut(s)	173, 186, 325, 749, 855, 1278, 1287
Alw21I	GWGCWC	3 cut(s)	324, 1011, 1523
Alw26I	GTCTC	4 cut(s)	332, 605, 1256, 1499
AlwI	GGATC	2 cut(s)	112, 173
Ama87I	CYCGRG	1 cut(s)	335
Aor51HI	AGCGCT	1 cut(s)	1231
ApeKI	GCWGC	3 cut(s)	57, 484, 1227
ApoI	RAATTY	1 cut(s)	650
ArsI	GACNNNNNNTTYG	2 cut(s)	1498, 1530
AspLEI	GCGC	5 cut(s)	206, 624, 756, 1128, 1232
AspS9I	GGNCC	7 cut(s)	379, 505, 747, 1282, 1410, 1441, 1539
AsuC2I	CCSGG	1 cut(s)	1537
AsuHPI	GGTGA	6 cut(s)	220, 488, 536, 544, 1258, 1481
AvaI	CYCGRG	1 cut(s)	335
AvaII	GGWCC	6 cut(s)	505, 747, 1282, 1410, 1441, 1539
BaeGI	GKGCMC	1 cut(s)	1429
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	753, 1125
BanII	GRGCYC	5 cut(s)	135, 895, 1011, 1523, 1561
BarI	GAAGNNNNNNTAC	2 cut(s)	1349, 1381
BbsI	GAAGAC	1 cut(s)	1524
Bbv12I	GWGCWC	3 cut(s)	324, 1011, 1523
BbvI	GCAGC	3 cut(s)	44, 496, 1239
BccI	CCATC	2 cut(s)	1274, 1456
BceAI	ACGGC	6 cut(s)	70, 200, 259, 521, 714, 1307
BcgI	CGANNNNNNTGC	6 cut(s)	1064, 1098, 1343, 1364, 1377, 1398
BciT130I	CCWGG	7 cut(s)	175, 188, 327, 751, 857, 1280, 1289
BciVI	GTATCC	1 cut(s)	1343
BcnI	CCSGG	1 cut(s)	1537
BcoDI	GTCTC	4 cut(s)	332, 605, 1256, 1499
BcuI	ACTAGT	1 cut(s)	280
BfaI	CTAG	3 cut(s)	281, 488, 1233
BfmI	CTRYAG	2 cut(s)	1066, 1174
BfoI	RGCGCY	3 cut(s)	757, 1129, 1233
BfuAI	ACCTGC	2 cut(s)	149, 563
BfuI	GTATCC	1 cut(s)	1343
BglI	GCCNNNNNGGC	2 cut(s)	408, 453
BisI	GCNGC	5 cut(s)	58, 412, 485, 851, 1228
BlpI	GCTNAGC	1 cut(s)	61
BlsI	GCNGC	5 cut(s)	59, 413, 486, 852, 1229
Bme1390I	CCNGG	8 cut(s)	175, 188, 327, 751, 857, 1280, 1289, 1537
Bme18I	GGWCC	6 cut(s)	505, 747, 1282, 1410, 1441, 1539
BmeT110I	CYCGRG	1 cut(s)	335
BmgBI	CACGTC	1 cut(s)	1438
BmgT120I	GGNCC	7 cut(s)	379, 505, 747, 1282, 1410, 1441, 1539
BmiI	GGNNCC	6 cut(s)	506, 755, 854, 1127, 1484, 1541
BmrFI	CCNGG	8 cut(s)	175, 188, 327, 751, 857, 1280, 1289, 1537
BmsI	GCATC	2 cut(s)	1095, 1555
BoxI	GACNNNNGTC	1 cut(s)	1415
BpiI	GAAGAC	1 cut(s)	1524
BpmI	CTGGAG	1 cut(s)	839
Bpu10I	CCTNAGC	1 cut(s)	894
Bpu1102I	GCTNAGC	1 cut(s)	61
BpuEI	CTTGAG	2 cut(s)	1472, 1510
BpuMI	CCSGG	1 cut(s)	1537
BsaHI	GRCGYC	4 cut(s)	427, 754, 1062, 1126
BsaI	GGTCTC	2 cut(s)	1256, 1499
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bsc4I	CCNNNNNNNGG	7 cut(s)	301, 421, 763, 849, 1079, 1422, 1438
Bse118I	RCCGGY	2 cut(s)	791, 1079
Bse1I	ACTGG	3 cut(s)	66, 199, 1556
Bse3DI	GCAATG	2 cut(s)	531, 1359
BseBI	CCWGG	7 cut(s)	175, 188, 327, 751, 857, 1280, 1289
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	7 cut(s)	301, 421, 763, 849, 1079, 1422, 1438
BseMI	GCAATG	2 cut(s)	531, 1359
BseMII	CTCAG	4 cut(s)	95, 908, 1135, 1150
BseNI	ACTGG	3 cut(s)	66, 199, 1556
BseRI	GAGGAG	3 cut(s)	383, 1019, 1513
BseSI	GKGCMC	1 cut(s)	1429
BseXI	GCAGC	3 cut(s)	44, 496, 1239
BseYI	CCCAGC	1 cut(s)	846
Bsh1236I	CGCG	2 cut(s)	129, 513
Bsh1285I	CGRYCG	1 cut(s)	1084
BshNI	GGYRCC	2 cut(s)	753, 1125
BsiEI	CGRYCG	1 cut(s)	1084
BsiHKAI	GWGCWC	3 cut(s)	324, 1011, 1523
BsiHKCI	CYCGRG	1 cut(s)	335
BsiSI	CCGG	4 cut(s)	546, 792, 1080, 1537
BslI	CCNNNNNNNGG	7 cut(s)	301, 421, 763, 849, 1079, 1422, 1438
BsmAI	GTCTC	4 cut(s)	332, 605, 1256, 1499
Bso31I	GGTCTC	2 cut(s)	1256, 1499
BsoBI	CYCGRG	1 cut(s)	335
Bsp1286I	GDGCHC	7 cut(s)	135, 324, 895, 1011, 1429, 1523, 1561
Bsp143I	GATC	2 cut(s)	117, 165
Bsp1720I	GCTNAGC	1 cut(s)	61
Bsp19I	CCATGG	1 cut(s)	1398
BspCNI	CTCAG	4 cut(s)	94, 907, 1134, 1149
BspFNI	CGCG	2 cut(s)	129, 513
BspLI	GGNNCC	6 cut(s)	506, 755, 854, 1127, 1484, 1541
BspMI	ACCTGC	2 cut(s)	149, 563
BspPI	GGATC	2 cut(s)	112, 173
BspQI	GCTCTTC	2 cut(s)	1016, 1304
BspT107I	GGYRCC	2 cut(s)	753, 1125
BspTNI	GGTCTC	2 cut(s)	1256, 1499
BsrDI	GCAATG	2 cut(s)	531, 1359
BsrFI	RCCGGY	2 cut(s)	791, 1079
BsrI	ACTGG	3 cut(s)	66, 199, 1556
BssAI	RCCGGY	2 cut(s)	791, 1079
BssMI	GATC	2 cut(s)	117, 165
BssNI	GRCGYC	4 cut(s)	427, 754, 1062, 1126
BssT1I	CCWWGG	3 cut(s)	295, 644, 1398
Bst2UI	CCWGG	7 cut(s)	175, 188, 327, 751, 857, 1280, 1289
Bst4CI	ACNGT	6 cut(s)	494, 575, 927, 984, 1469, 1510
Bst6I	CTCTTC	3 cut(s)	53, 1016, 1304
BstACI	GRCGYC	4 cut(s)	427, 754, 1062, 1126
BstAPI	GCANNNNNTGC	1 cut(s)	150
BstDEI	CTNAG	5 cut(s)	61, 81, 894, 1121, 1136
BstDSI	CCRYGG	4 cut(s)	571, 730, 923, 1398
BstEII	GGTNACC	2 cut(s)	575, 665
BstF5I	GGATG	1 cut(s)	196
BstFNI	CGCG	2 cut(s)	129, 513
BstH2I	RGCGCY	3 cut(s)	757, 1129, 1233
BstHHI	GCGC	5 cut(s)	206, 624, 756, 1128, 1232
BstKTI	GATC	2 cut(s)	120, 168
BstMAI	GTCTC	4 cut(s)	332, 605, 1256, 1499
BstMBI	GATC	2 cut(s)	117, 165
BstMCI	CGRYCG	1 cut(s)	1084
BstMWI	GCNNNNNNNGC	9 cut(s)	150, 212, 408, 453, 542, 621, 628, 760, 1565
BstNI	CCWGG	7 cut(s)	175, 188, 327, 751, 857, 1280, 1289
BstNSI	RCATGY	2 cut(s)	1024, 1114
BstPAI	GACNNNNGTC	1 cut(s)	1415
BstPI	GGTNACC	2 cut(s)	575, 665
BstSCI	CCNGG	8 cut(s)	173, 186, 325, 749, 855, 1278, 1287, 1535
BstSFI	CTRYAG	2 cut(s)	1066, 1174
BstSLI	GKGCMC	1 cut(s)	1429
BstUI	CGCG	2 cut(s)	129, 513
BstV1I	GCAGC	3 cut(s)	44, 496, 1239
BstV2I	GAAGAC	1 cut(s)	1524
BstX2I	RGATCY	1 cut(s)	117
BstXI	CCANNNNNNTGG	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	1343
BtgI	CCRYGG	4 cut(s)	571, 730, 923, 1398
BtrI	CACGTC	1 cut(s)	1438
BtsCI	GGATG	1 cut(s)	196
BtsIMutI	CAGTG	2 cut(s)	206, 1144
BveI	ACCTGC	2 cut(s)	149, 563
CfoI	GCGC	5 cut(s)	206, 624, 756, 1128, 1232
Cfr10I	RCCGGY	2 cut(s)	791, 1079
Cfr13I	GGNCC	7 cut(s)	379, 505, 747, 1282, 1410, 1441, 1539
CseI	GACGC	4 cut(s)	435, 502, 519, 827
CsiI	ACCWGGT	1 cut(s)	1278
Csp6I	GTAC	2 cut(s)	1357, 1492
CviAII	CATG	9 cut(s)	308, 1000, 1021, 1111, 1202, 1319, 1339, 1387, 1399
CviQI	GTAC	2 cut(s)	1357, 1492
DdeI	CTNAG	5 cut(s)	61, 81, 894, 1121, 1136
DinI	GGCGCC	2 cut(s)	755, 1127
DpnI	GATC	2 cut(s)	119, 167
DpnII	GATC	2 cut(s)	117, 165
DrdI	GACNNNNNNGTC	1 cut(s)	1280
DseDI	GACNNNNNNGTC	1 cut(s)	1280
EaeI	YGGCCR	3 cut(s)	3, 445, 1056
Eam1104I	CTCTTC	3 cut(s)	53, 1016, 1304
EarI	CTCTTC	3 cut(s)	53, 1016, 1304
EciI	GGCGGA	2 cut(s)	1121, 1274
Ecl136II	GAGCTC	2 cut(s)	1009, 1521
Eco130I	CCWWGG	3 cut(s)	295, 644, 1398
Eco24I	GRGCYC	5 cut(s)	135, 895, 1011, 1523, 1561
Eco31I	GGTCTC	2 cut(s)	1256, 1499
Eco47I	GGWCC	6 cut(s)	505, 747, 1282, 1410, 1441, 1539
Eco47III	AGCGCT	1 cut(s)	1231
Eco53kI	GAGCTC	2 cut(s)	1009, 1521
Eco57I	CTGAAG	1 cut(s)	1090
Eco88I	CYCGRG	1 cut(s)	335
Eco91I	GGTNACC	2 cut(s)	575, 665
EcoICRI	GAGCTC	2 cut(s)	1009, 1521
EcoO109I	RGGNCCY	1 cut(s)	1410
EcoO65I	GGTNACC	2 cut(s)	575, 665
EcoRII	CCWGG	7 cut(s)	173, 186, 325, 749, 855, 1278, 1287
EcoT14I	CCWWGG	3 cut(s)	295, 644, 1398
EcoT38I	GRGCYC	5 cut(s)	135, 895, 1011, 1523, 1561
EgeI	GGCGCC	2 cut(s)	755, 1127
EheI	GGCGCC	2 cut(s)	755, 1127
ErhI	CCWWGG	3 cut(s)	295, 644, 1398
FaeI	CATG	9 cut(s)	311, 1003, 1024, 1114, 1205, 1322, 1342, 1390, 1402
FatI	CATG	9 cut(s)	307, 999, 1020, 1110, 1201, 1318, 1338, 1386, 1398
FauI	CCCGC	4 cut(s)	134, 550, 1080, 1416
FblI	GTMKAC	2 cut(s)	1065, 1209
Fnu4HI	GCNGC	5 cut(s)	58, 412, 485, 851, 1228
FokI	GGATG	1 cut(s)	203
FriOI	GRGCYC	5 cut(s)	135, 895, 1011, 1523, 1561
Fsp4HI	GCNGC	5 cut(s)	58, 412, 485, 851, 1228
FspBI	CTAG	3 cut(s)	281, 488, 1233
GlaI	GCGC	5 cut(s)	205, 623, 755, 1127, 1231
GluI	GCNGC	5 cut(s)	58, 412, 485, 851, 1228
GsaI	CCCAGC	1 cut(s)	850
GsuI	CTGGAG	1 cut(s)	839
HaeII	RGCGCY	3 cut(s)	757, 1129, 1233
HapII	CCGG	4 cut(s)	546, 792, 1080, 1537
HgaI	GACGC	4 cut(s)	435, 502, 519, 827
HhaI	GCGC	5 cut(s)	206, 624, 756, 1128, 1232
Hin1I	GRCGYC	4 cut(s)	427, 754, 1062, 1126
Hin1II	CATG	9 cut(s)	311, 1003, 1024, 1114, 1205, 1322, 1342, 1390, 1402
Hin6I	GCGC	5 cut(s)	204, 622, 754, 1126, 1230
HinP1I	GCGC	5 cut(s)	204, 622, 754, 1126, 1230
HincII	GTYRAC	1 cut(s)	713
HindII	GTYRAC	1 cut(s)	713
HinfI	GANTC	6 cut(s)	170, 225, 350, 549, 562, 709
HpaII	CCGG	4 cut(s)	546, 792, 1080, 1537
HphI	GGTGA	6 cut(s)	220, 488, 536, 544, 1258, 1481
Hpy166II	GTNNAC	6 cut(s)	286, 713, 734, 1066, 1210, 1249
Hpy188I	TCNGA	5 cut(s)	165, 222, 355, 364, 509
Hpy188III	TCNNGA	3 cut(s)	335, 1369, 1562
Hpy8I	GTNNAC	6 cut(s)	286, 713, 734, 1066, 1210, 1249
Hpy99I	CGWCG	5 cut(s)	293, 513, 821, 1064, 1439
HpyAV	CCTTC	5 cut(s)	257, 267, 515, 738, 1375
HpyCH4III	ACNGT	6 cut(s)	494, 575, 927, 984, 1469, 1510
HpyCH4IV	ACGT	5 cut(s)	288, 901, 1062, 1215, 1437
HpyCH4V	TGCA	4 cut(s)	952, 967, 1024, 1330
HpyF10VI	GCNNNNNNNGC	9 cut(s)	150, 212, 408, 453, 542, 621, 628, 760, 1565
HpyF3I	CTNAG	5 cut(s)	61, 81, 894, 1121, 1136
HpySE526I	ACGT	5 cut(s)	288, 901, 1062, 1215, 1437
Hsp92I	GRCGYC	4 cut(s)	427, 754, 1062, 1126
Hsp92II	CATG	9 cut(s)	311, 1003, 1024, 1114, 1205, 1322, 1342, 1390, 1402
HspAI	GCGC	5 cut(s)	204, 622, 754, 1126, 1230
KasI	GGCGCC	2 cut(s)	753, 1125
KroI	GCCGGC	1 cut(s)	791
KroNI	GCCGGC	1 cut(s)	793
Kzo9I	GATC	2 cut(s)	117, 165
LguI	GCTCTTC	2 cut(s)	1016, 1304
LmnI	GCTCC	5 cut(s)	327, 370, 858, 1006, 1526
Lsp1109I	GCAGC	3 cut(s)	44, 496, 1239
LweI	GCATC	2 cut(s)	1095, 1555
MabI	ACCWGGT	1 cut(s)	1278
MaeI	CTAG	3 cut(s)	281, 488, 1233
MaeII	ACGT	5 cut(s)	288, 901, 1062, 1215, 1437
MaeIII	GTNAC	5 cut(s)	494, 550, 575, 665, 927
MalI	GATC	2 cut(s)	119, 167
MboI	GATC	2 cut(s)	117, 165
MboII	GAAGA	6 cut(s)	40, 359, 1003, 1147, 1291, 1524
MflI	RGATCY	1 cut(s)	117
MhlI	GDGCHC	7 cut(s)	135, 324, 895, 1011, 1429, 1523, 1561
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	440, 650
MluI	ACGCGT	1 cut(s)	511
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	2 cut(s)	754, 1126
MlyI	GAGTC	4 cut(s)	179, 556, 558, 718
MmeI	TCCRAC	2 cut(s)	143, 532
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	791
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	1570
MslI	CAYNNNNRTG	1 cut(s)	1025
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	109, 850
MspI	CCGG	4 cut(s)	546, 792, 1080, 1537
MspR9I	CCNGG	8 cut(s)	175, 188, 327, 751, 857, 1280, 1289, 1537
MvaI	CCWGG	7 cut(s)	175, 188, 327, 751, 857, 1280, 1289
MvnI	CGCG	2 cut(s)	129, 513
MwoI	GCNNNNNNNGC	9 cut(s)	150, 212, 408, 453, 542, 621, 628, 760, 1565
NaeI	GCCGGC	1 cut(s)	793
NarI	GGCGCC	2 cut(s)	754, 1126
NciI	CCSGG	1 cut(s)	1537
NcoI	CCATGG	1 cut(s)	1398
NdeII	GATC	2 cut(s)	117, 165
NgoMIV	GCCGGC	1 cut(s)	791
NlaIII	CATG	9 cut(s)	311, 1003, 1024, 1114, 1205, 1322, 1342, 1390, 1402
NlaIV	GGNNCC	6 cut(s)	506, 755, 854, 1127, 1484, 1541
NmeAIII	GCCGAG	1 cut(s)	1168
NmuCI	GTSAC	3 cut(s)	494, 550, 927
NspI	RCATGY	2 cut(s)	1024, 1114
PaeI	GCATGC	1 cut(s)	1114
PaqCI	CACCTGC	1 cut(s)	563
PciSI	GCTCTTC	2 cut(s)	1016, 1304
PcsI	WCGNNNNNNNCGW	2 cut(s)	912, 1257
PdiI	GCCGGC	1 cut(s)	793
PfeI	GAWTC	2 cut(s)	225, 350
PflFI	GACNNNGTC	3 cut(s)	911, 1280, 1439
PkrI	GCNGC	5 cut(s)	59, 413, 486, 852, 1229
PleI	GAGTC	4 cut(s)	178, 556, 557, 717
PluTI	GGCGCC	2 cut(s)	757, 1129
PpsI	GAGTC	4 cut(s)	178, 556, 557, 717
PpuMI	RGGWCCY	1 cut(s)	1410
PshAI	GACNNNNGTC	1 cut(s)	1415
Psp124BI	GAGCTC	2 cut(s)	1011, 1523
Psp5II	RGGWCCY	1 cut(s)	1410
Psp6I	CCWGG	7 cut(s)	173, 186, 325, 749, 855, 1278, 1287
PspEI	GGTNACC	2 cut(s)	575, 665
PspFI	CCCAGC	1 cut(s)	846
PspGI	CCWGG	7 cut(s)	173, 186, 325, 749, 855, 1278, 1287
PspN4I	GGNNCC	6 cut(s)	506, 755, 854, 1127, 1484, 1541
PspPI	GGNCC	7 cut(s)	379, 505, 747, 1282, 1410, 1441, 1539
PspPPI	RGGWCCY	1 cut(s)	1410
PsrI	GAACNNNNNNTAC	2 cut(s)	1475, 1507
PsuI	RGATCY	1 cut(s)	117
PsyI	GACNNNGTC	3 cut(s)	911, 1280, 1439
PvuII	CAGCTG	1 cut(s)	109
RsaI	GTAC	2 cut(s)	1358, 1493
RsaNI	GTAC	2 cut(s)	1357, 1492
RseI	CAYNNNNRTG	1 cut(s)	1025
SacI	GAGCTC	2 cut(s)	1011, 1523
SapI	GCTCTTC	2 cut(s)	1016, 1304
SaqAI	TTAA	1 cut(s)	1570
SatI	GCNGC	5 cut(s)	58, 412, 485, 851, 1228
Sau3AI	GATC	2 cut(s)	117, 165
Sau96I	GGNCC	7 cut(s)	379, 505, 747, 1282, 1410, 1441, 1539
SchI	GAGTC	4 cut(s)	179, 556, 558, 718
ScrFI	CCNGG	8 cut(s)	175, 188, 327, 751, 857, 1280, 1289, 1537
SduI	GDGCHC	7 cut(s)	135, 324, 895, 1011, 1429, 1523, 1561
SexAI	ACCWGGT	1 cut(s)	1278
SfaNI	GCATC	2 cut(s)	1095, 1555
SfcI	CTRYAG	2 cut(s)	1066, 1174
SfiI	GGCCNNNNNGGCC	2 cut(s)	408, 453
SfoI	GGCGCC	2 cut(s)	755, 1127
SinI	GGWCC	6 cut(s)	505, 747, 1282, 1410, 1441, 1539
SmiMI	CAYNNNNRTG	1 cut(s)	1025
SmlI	CTYRAG	2 cut(s)	1487, 1525
SmoI	CTYRAG	2 cut(s)	1487, 1525
SpeI	ACTAGT	1 cut(s)	280
SphI	GCATGC	1 cut(s)	1114
Sse9I	AATT	2 cut(s)	440, 650
SspDI	GGCGCC	2 cut(s)	753, 1125
SspMI	CTAG	3 cut(s)	281, 488, 1233
SstI	GAGCTC	2 cut(s)	1011, 1523
StyD4I	CCNGG	8 cut(s)	173, 186, 325, 749, 855, 1278, 1287, 1535
StyI	CCWWGG	3 cut(s)	295, 644, 1398
TaaI	ACNGT	6 cut(s)	494, 575, 927, 984, 1469, 1510
TaiI	ACGT	5 cut(s)	291, 904, 1065, 1218, 1440
TaqI	TCGA	5 cut(s)	168, 798, 831, 906, 915
TaqII	GACCGA	1 cut(s)	1388
TasI	AATT	2 cut(s)	440, 650
TatI	WGTACW	2 cut(s)	1356, 1491
TauI	GCSGC	2 cut(s)	414, 853
TfiI	GAWTC	2 cut(s)	225, 350
Tru1I	TTAA	1 cut(s)	1570
Tru9I	TTAA	1 cut(s)	1570
TscAI	CASTG	2 cut(s)	206, 1144
TseFI	GTSAC	3 cut(s)	494, 550, 927
TseI	GCWGC	3 cut(s)	57, 484, 1227
Tsp45I	GTSAC	3 cut(s)	494, 550, 927
TspDTI	ATGAA	5 cut(s)	1002, 1043, 1218, 1291, 1406
TspGWI	ACGGA	2 cut(s)	1362, 1405
TspRI	CASTG	2 cut(s)	206, 1144
Tth111I	GACNNNGTC	3 cut(s)	911, 1280, 1439
VpaK11BI	GGWCC	6 cut(s)	505, 747, 1282, 1410, 1441, 1539
XapI	RAATTY	1 cut(s)	650
XceI	RCATGY	2 cut(s)	1024, 1114
XmiI	GTMKAC	2 cut(s)	1065, 1209
XspI	CTAG	3 cut(s)	281, 488, 1233
ZraI	GACGTC	1 cut(s)	1063

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.