Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Reverse (-)

19912427 .. 19914559

Gene Structure 2133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00180550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1740 bp

ATGGCTAAGCCTATAGCTCTCGCCTTTTCTCTTTGCTTGCTTGTCCTCTTCCACAGCTGCTTAGCAGCTCGCCAACAATCTCAGTCAAGCCAGCAGAACGAGTGCCAACTAGATCAGCTCCAAGCTCGCGAACCTGATAACCGCATTGAGACTGAAGCGGGTAGGATCGAATCCTGGGACTACAACCGCGACGACTTCCAATGTGCTGGTGTTGCTACTTTCGAAGAATCTGAACAATCTGATGAAGAACAACAATGGCAAGGGCAGCAGGGGCGGCGCCATGGACAGCAAGGCCGTGGACAACAGGAGCAGAAAGAACAGGAAGAGTATGAACAAGAACAACGCCAACGCCATCGCCAACAGGGACAACAAGGCCGTGGACAACGGGGTCAACAAGAACAAGAAGAGGAAGAACAACGACAACGCCAACGCCAACAGGGACAACAAGGCCATGGACAGCAATCACAGCATGATAGACAACAAGGACAGCAAGGCCAACAGGGACAAGAGAGCTTCGAACAGCTAGATAGACACCAGAAGGTTCGACGCATAAAAGAAGGCGATATTGTTGCTATTCCTGCCGGAGTCAGCTACTGGTCCTACAATGACGGTGACCAACCTCTTGTTGCTGTCAGTCTTCTTGACATCAGCAACAACCAAAACCAGCTTGATCTTAACCCTAGGAGATTCTATCTTGCTGGTAACCCACAAGATGAGTTTAACCAAGGGCAAAGCCAGAGTCGAAGGGGCCAGCAAGGACGTGGACAACAAGGGCAAGGCCAAAGTCAATGGGACCAGGACCAGGACCAGGACCAGCAACAGCAAGGAGGAAGGAGCAGGCACCAGCAACAACAGCAAGGAAACAACAACAACATCTTCGCTGGCTTCAACACACAGCTTCTCGCTGACTCTCTGAATATCGACCAACAGACTGCGCAGCAGCTTCAGGGACAAAACGACAACAGACCCCAAATCGTCAGAGTTAGAGGACGTCTTGATTTTATCCAGCCGCCACAGTCACAACAGGAGGAAAGACAAGAACAGGGAATTCAGAGACAACAGGGACAGAATGGTCTTGAGGAAACTCTCTGCAACTGGAAGATCAGAGAGAATATTGGCAGGCCTTCACGTGCTGATGTCTTCAGTCCCCAAGCCGGTCGCATCAGCACCCTCAACAGCTTTAAGTTGCCTATTCTCAGGTACCTTGACCTCAGCGCTGAGAGAGGCTTCTTCTACAATGTAAGTATACTCCATTTCTGTCAATTACTCAATATCAAGCAACTTATTGACTGTTTGAGCTCAAGTAAATGTCTATTAATTATCCTCTACATGCAGAATGCTATCTACAGCCCACACTGGAACTTGAACGCCCACGAAGTGTACTACGTCATTCGAGGTAGCGCCAGGGTTCAGGTTGTGAACGAAAACGGCCAGGCCATCTTGGACAACGAAGTCCGCCAGGGACAGCTCTTCATTGTGCCACAGAACCACGCAGTGTTACAAAAGGCTAGCAACAACGGCTACGAGTACATTGCCTTCAAGACCCAGGACAATGCCAAGATTAACACTCTGGCAGGCCGGACCTCAGTCCTGCGGGCACTCCCCGACGTCGTCCTTGCTAACGCATACCAGATTGACCGACAACAGGCAAGGAATCTCAAATACAACAGACAGGAGACTGTTGCTTTGAGCTCTTCAAGGTCTTCCCAATCCCAGAGGAGCTGGTGGGCTACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

579

Amino Acids

66.64

Weight (kDa)

6.18

Isoelectric Point (pI)

70.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	174 - 236	1.4e-10	Cupin
Cupin_1	PF00190	439 - 550	2.5e-31	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	387, 1071, 1451
AatII	GACGTC	2 cut(s)	994, 1611
Acc16I	TGCGCA	1 cut(s)	936
Acc65I	GGTACC	1 cut(s)	1200
AccB1I	GGYRCC	3 cut(s)	276, 840, 1200
AccI	GTMKAC	1 cut(s)	1246
AccII	CGCG	2 cut(s)	129, 189
AciI	CCGC	7 cut(s)	142, 158, 187, 274, 1010, 1456, 1594
AclWI	GGATC	1 cut(s)	173
AcoI	YGGCCR	1 cut(s)	1429
AcsI	RAATTY	1 cut(s)	1047
AcuI	CTGAAG	3 cut(s)	174, 929, 1126
AcvI	CACGTG	1 cut(s)	1130
AcyI	GRCGYC	3 cut(s)	277, 991, 1608
AdeI	CACNNNGTG	2 cut(s)	1378, 1495
AfaI	GTAC	3 cut(s)	1202, 1382, 1529
AfeI	AGCGCT	1 cut(s)	1216
AfiI	CCNNNNNNNGG	4 cut(s)	802, 808, 1154, 1645
AgsI	TTSAA	4 cut(s)	889, 1366, 1540, 1698
AjiI	CACGTC	1 cut(s)	761
AjnI	CCWGG	8 cut(s)	173, 795, 801, 807, 1403, 1431, 1458, 1545
Alw21I	GWGCWC	2 cut(s)	1301, 1694
Alw26I	GTCTC	3 cut(s)	143, 1048, 1670
AlwI	GGATC	1 cut(s)	173
AlwNI	CAGNNNCTG	1 cut(s)	594
Aor51HI	AGCGCT	1 cut(s)	1216
ApeKI	GCWGC	5 cut(s)	57, 65, 265, 937, 940
ApoI	RAATTY	1 cut(s)	1047
ArsI	GACNNNNNNTTYG	4 cut(s)	724, 756, 1669, 1701
AseI	ATTAAT	1 cut(s)	1316
Asp718I	GGTACC	1 cut(s)	1200
AspA2I	CCTAGG	1 cut(s)	680
AspLEI	GCGC	4 cut(s)	279, 937, 1217, 1403
AspS9I	GGNCC	7 cut(s)	597, 748, 793, 799, 805, 811, 1581
AsuHPI	GGTGA	1 cut(s)	623
AsuII	TTCGAA	2 cut(s)	222, 516
AsuNHI	GCTAGC	1 cut(s)	1508
AvaII	GGWCC	6 cut(s)	597, 793, 799, 805, 811, 1581
AvrII	CCTAGG	1 cut(s)	680
BaeGI	GKGCMC	1 cut(s)	1600
BanI	GGYRCC	3 cut(s)	276, 840, 1200
BanII	GRGCYC	2 cut(s)	1301, 1694
BarI	GAAGNNNNNNTAC	2 cut(s)	1520, 1552
BbrPI	CACGTG	1 cut(s)	1130
BbsI	GAAGAC	3 cut(s)	629, 1132, 1695
Bbv12I	GWGCWC	2 cut(s)	1301, 1694
BbvCI	CCTCAGC	1 cut(s)	1211
BbvI	GCAGC	5 cut(s)	44, 77, 277, 949, 952
BccI	CCATC	2 cut(s)	360, 1445
BceAI	ACGGC	4 cut(s)	279, 360, 1444, 1534
BcgI	CGANNNNNNTGC	4 cut(s)	551, 585, 1514, 1548
BciT130I	CCWGG	8 cut(s)	175, 797, 803, 809, 1405, 1433, 1460, 1547
BcoDI	GTCTC	3 cut(s)	143, 1048, 1670
BfaI	CTAG	4 cut(s)	110, 524, 681, 1509
BfmI	CTRYAG	2 cut(s)	12, 1345
BfoI	RGCGCY	3 cut(s)	280, 1218, 1404
BisI	GCNGC	7 cut(s)	58, 66, 266, 275, 938, 941, 1010
BlnI	CCTAGG	1 cut(s)	680
BlpI	GCTNAGC	2 cut(s)	6, 61
BlsI	GCNGC	7 cut(s)	59, 67, 267, 276, 939, 942, 1011
Bme1390I	CCNGG	8 cut(s)	175, 797, 803, 809, 1405, 1433, 1460, 1547
Bme18I	GGWCC	6 cut(s)	597, 793, 799, 805, 811, 1581
BmgBI	CACGTC	1 cut(s)	761
BmgT120I	GGNCC	7 cut(s)	597, 748, 793, 799, 805, 811, 1581
BmiI	GGNNCC	5 cut(s)	278, 749, 794, 842, 1202
BmrFI	CCNGG	8 cut(s)	175, 797, 803, 809, 1405, 1433, 1460, 1547
BmsI	GCATC	1 cut(s)	1170
BmtI	GCTAGC	1 cut(s)	1512
BoxI	GACNNNNGTC	1 cut(s)	1586
BpiI	GAAGAC	3 cut(s)	629, 1132, 1695
Bpu10I	CCTNAGC	1 cut(s)	1211
Bpu1102I	GCTNAGC	2 cut(s)	6, 61
Bpu14I	TTCGAA	2 cut(s)	222, 516
BpuEI	CTTGAG	2 cut(s)	1097, 1285
BsaAI	YACGTR	1 cut(s)	1130
BsaHI	GRCGYC	3 cut(s)	277, 991, 1608
Bsc4I	CCNNNNNNNGG	4 cut(s)	802, 808, 1154, 1645
Bse118I	RCCGGY	1 cut(s)	1154
Bse1I	ACTGG	3 cut(s)	599, 1100, 1361
Bse3DI	GCAATG	1 cut(s)	1530
BseBI	CCWGG	8 cut(s)	175, 797, 803, 809, 1405, 1433, 1460, 1547
BseLI	CCNNNNNNNGG	4 cut(s)	802, 808, 1154, 1645
BseMI	GCAATG	1 cut(s)	1530
BseMII	CTCAG	5 cut(s)	95, 1209, 1210, 1225, 1599
BseNI	ACTGG	3 cut(s)	599, 1100, 1361
BseRI	GAGGAG	1 cut(s)	1732
BseSI	GKGCMC	1 cut(s)	1600
BseXI	GCAGC	5 cut(s)	44, 77, 277, 949, 952
Bsh1236I	CGCG	2 cut(s)	129, 189
Bsh1285I	CGRYCG	1 cut(s)	1159
BshNI	GGYRCC	3 cut(s)	276, 840, 1200
BsiEI	CGRYCG	1 cut(s)	1159
BsiHKAI	GWGCWC	2 cut(s)	1301, 1694
BsiSI	CCGG	3 cut(s)	582, 1155, 1579
BslFI	GGGAC	9 cut(s)	191, 378, 453, 516, 806, 963, 1077, 1131, 1476
BslI	CCNNNNNNNGG	4 cut(s)	802, 808, 1154, 1645
BsmAI	GTCTC	3 cut(s)	143, 1048, 1670
BsmFI	GGGAC	9 cut(s)	191, 378, 453, 516, 806, 963, 1077, 1131, 1476
BsmI	GAATGC	1 cut(s)	1342
Bsp119I	TTCGAA	2 cut(s)	222, 516
Bsp1286I	GDGCHC	3 cut(s)	1301, 1600, 1694
Bsp143I	GATC	4 cut(s)	112, 165, 670, 1101
Bsp1720I	GCTNAGC	2 cut(s)	6, 61
Bsp19I	CCATGG	2 cut(s)	280, 451
Bsp68I	TCGCGA	1 cut(s)	129
BspACI	CCGC	7 cut(s)	142, 158, 187, 274, 1010, 1456, 1594
BspCNI	CTCAG	5 cut(s)	94, 1209, 1210, 1224, 1598
BspFNI	CGCG	2 cut(s)	129, 189
BspLI	GGNNCC	5 cut(s)	278, 749, 794, 842, 1202
BspOI	GCTAGC	1 cut(s)	1512
BspPI	GGATC	1 cut(s)	173
BspQI	GCTCTTC	2 cut(s)	1475, 1699
BspT104I	TTCGAA	2 cut(s)	222, 516
BspT107I	GGYRCC	3 cut(s)	276, 840, 1200
BsrDI	GCAATG	1 cut(s)	1530
BsrFI	RCCGGY	1 cut(s)	1154
BsrI	ACTGG	3 cut(s)	599, 1100, 1361
BssAI	RCCGGY	1 cut(s)	1154
BssMI	GATC	4 cut(s)	112, 165, 670, 1101
BssNAI	GTATAC	1 cut(s)	1247
BssNI	GRCGYC	3 cut(s)	277, 991, 1608
BssT1I	CCWWGG	4 cut(s)	280, 451, 680, 724
Bst1107I	GTATAC	1 cut(s)	1247
Bst2UI	CCWGG	8 cut(s)	175, 797, 803, 809, 1405, 1433, 1460, 1547
Bst4CI	ACNGT	4 cut(s)	611, 1017, 1292, 1681
Bst6I	CTCTTC	5 cut(s)	53, 318, 399, 1475, 1699
BstACI	GRCGYC	3 cut(s)	277, 991, 1608
BstBAI	YACGTR	1 cut(s)	1130
BstBI	TTCGAA	2 cut(s)	222, 516
BstDEI	CTNAG	7 cut(s)	6, 61, 81, 1196, 1211, 1218, 1585
BstDSI	CCRYGG	4 cut(s)	280, 295, 376, 451
BstEII	GGTNACC	2 cut(s)	611, 701
BstFNI	CGCG	2 cut(s)	129, 189
BstH2I	RGCGCY	3 cut(s)	280, 1218, 1404
BstHHI	GCGC	4 cut(s)	279, 937, 1217, 1403
BstKTI	GATC	4 cut(s)	115, 168, 673, 1104
BstMAI	GTCTC	3 cut(s)	143, 1048, 1670
BstMBI	GATC	4 cut(s)	112, 165, 670, 1101
BstMCI	CGRYCG	1 cut(s)	1159
BstMWI	GCNNNNNNNGC	8 cut(s)	212, 265, 271, 274, 466, 578, 853, 1518
BstNI	CCWGG	8 cut(s)	175, 797, 803, 809, 1405, 1433, 1460, 1547
BstNSI	RCATGY	1 cut(s)	1333
BstPAI	GACNNNNGTC	1 cut(s)	1586
BstPI	GGTNACC	2 cut(s)	611, 701
BstSCI	CCNGG	8 cut(s)	173, 795, 801, 807, 1403, 1431, 1458, 1545
BstSFI	CTRYAG	2 cut(s)	12, 1345
BstSLI	GKGCMC	1 cut(s)	1600
BstUI	CGCG	2 cut(s)	129, 189
BstV1I	GCAGC	5 cut(s)	44, 77, 277, 949, 952
BstV2I	GAAGAC	3 cut(s)	629, 1132, 1695
BstXI	CCANNNNNNTGG	1 cut(s)	206
BstZ17I	GTATAC	1 cut(s)	1247
BtgI	CCRYGG	4 cut(s)	280, 295, 376, 451
BtgZI	GCGATG	1 cut(s)	338
BtrI	CACGTC	1 cut(s)	761
BtsI	GCAGTG	1 cut(s)	1500
BtsIMutI	CAGTG	2 cut(s)	1354, 1500
BtuMI	TCGCGA	1 cut(s)	129
CaiI	CAGNNNCTG	1 cut(s)	594
CfoI	GCGC	4 cut(s)	279, 937, 1217, 1403
Cfr10I	RCCGGY	1 cut(s)	1154
Cfr13I	GGNCC	7 cut(s)	597, 748, 793, 799, 805, 811, 1581
CseI	GACGC	1 cut(s)	555
Csp6I	GTAC	3 cut(s)	1201, 1381, 1528
CviAII	CATG	4 cut(s)	281, 452, 470, 1330
CviQI	GTAC	3 cut(s)	1201, 1381, 1528
DdeI	CTNAG	7 cut(s)	6, 61, 81, 1196, 1211, 1218, 1585
DinI	GGCGCC	1 cut(s)	278
DpnI	GATC	4 cut(s)	114, 167, 672, 1103
DpnII	GATC	4 cut(s)	112, 165, 670, 1101
DraIII	CACNNNGTG	2 cut(s)	1378, 1495
DrdI	GACNNNNNNGTC	3 cut(s)	387, 1071, 1451
DseDI	GACNNNNNNGTC	3 cut(s)	387, 1071, 1451
EaeI	YGGCCR	1 cut(s)	1429
Eam1104I	CTCTTC	5 cut(s)	53, 318, 399, 1475, 1699
EarI	CTCTTC	5 cut(s)	53, 318, 399, 1475, 1699
EciI	GGCGGA	1 cut(s)	1445
Ecl136II	GAGCTC	2 cut(s)	1299, 1692
Eco130I	CCWWGG	4 cut(s)	280, 451, 680, 724
Eco147I	AGGCCT	1 cut(s)	1123
Eco24I	GRGCYC	2 cut(s)	1301, 1694
Eco47I	GGWCC	6 cut(s)	597, 793, 799, 805, 811, 1581
Eco47III	AGCGCT	1 cut(s)	1216
Eco53kI	GAGCTC	2 cut(s)	1299, 1692
Eco57I	CTGAAG	3 cut(s)	174, 929, 1126
Eco72I	CACGTG	1 cut(s)	1130
Eco91I	GGTNACC	2 cut(s)	611, 701
EcoICRI	GAGCTC	2 cut(s)	1299, 1692
EcoO65I	GGTNACC	2 cut(s)	611, 701
EcoRI	GAATTC	1 cut(s)	1047
EcoRII	CCWGG	8 cut(s)	173, 795, 801, 807, 1403, 1431, 1458, 1545
EcoT14I	CCWWGG	4 cut(s)	280, 451, 680, 724
EcoT38I	GRGCYC	2 cut(s)	1301, 1694
EgeI	GGCGCC	1 cut(s)	278
EheI	GGCGCC	1 cut(s)	278
ErhI	CCWWGG	4 cut(s)	280, 451, 680, 724
FaeI	CATG	4 cut(s)	284, 455, 473, 1333
FaqI	GGGAC	9 cut(s)	191, 378, 453, 516, 806, 963, 1077, 1131, 1476
FatI	CATG	4 cut(s)	280, 451, 469, 1329
FauI	CCCGC	2 cut(s)	151, 1587
FblI	GTMKAC	1 cut(s)	1246
Fnu4HI	GCNGC	7 cut(s)	58, 66, 266, 275, 938, 941, 1010
FriOI	GRGCYC	2 cut(s)	1301, 1694
Fsp4HI	GCNGC	7 cut(s)	58, 66, 266, 275, 938, 941, 1010
FspBI	CTAG	4 cut(s)	110, 524, 681, 1509
FspI	TGCGCA	1 cut(s)	936
GlaI	GCGC	4 cut(s)	278, 936, 1216, 1402
GluI	GCNGC	7 cut(s)	58, 66, 266, 275, 938, 941, 1010
HaeII	RGCGCY	3 cut(s)	280, 1218, 1404
HapII	CCGG	3 cut(s)	582, 1155, 1579
HgaI	GACGC	1 cut(s)	555
HhaI	GCGC	4 cut(s)	279, 937, 1217, 1403
Hin1I	GRCGYC	3 cut(s)	277, 991, 1608
Hin1II	CATG	4 cut(s)	284, 455, 473, 1333
Hin6I	GCGC	4 cut(s)	277, 935, 1215, 1401
HinP1I	GCGC	4 cut(s)	277, 935, 1215, 1401
HincII	GTYRAC	1 cut(s)	392
HindII	GTYRAC	1 cut(s)	392
HinfI	GANTC	7 cut(s)	170, 227, 585, 687, 739, 908, 1654
HpaII	CCGG	3 cut(s)	582, 1155, 1579
HphI	GGTGA	1 cut(s)	623
Hpy166II	GTNNAC	7 cut(s)	299, 380, 392, 764, 1247, 1381, 1420
Hpy188I	TCNGA	6 cut(s)	232, 241, 915, 980, 1053, 1106
Hpy188III	TCNNGA	5 cut(s)	128, 641, 995, 1076, 1540
Hpy8I	GTNNAC	7 cut(s)	299, 380, 392, 764, 1247, 1381, 1420
Hpy99I	CGWCG	4 cut(s)	194, 549, 1610, 1613
HpyAV	CCTTC	6 cut(s)	532, 551, 738, 825, 1134, 1546
HpyCH4III	ACNGT	4 cut(s)	611, 1017, 1292, 1681
HpyCH4IV	ACGT	5 cut(s)	760, 991, 1129, 1386, 1608
HpyCH4V	TGCA	3 cut(s)	1092, 1333, 1736
HpyF10VI	GCNNNNNNNGC	8 cut(s)	212, 265, 271, 274, 466, 578, 853, 1518
HpyF3I	CTNAG	7 cut(s)	6, 61, 81, 1196, 1211, 1218, 1585
HpySE526I	ACGT	5 cut(s)	760, 991, 1129, 1386, 1608
Hsp92I	GRCGYC	3 cut(s)	277, 991, 1608
Hsp92II	CATG	4 cut(s)	284, 455, 473, 1333
HspAI	GCGC	4 cut(s)	277, 935, 1215, 1401
KasI	GGCGCC	1 cut(s)	276
KpnI	GGTACC	1 cut(s)	1204
Kzo9I	GATC	4 cut(s)	112, 165, 670, 1101
LguI	GCTCTTC	2 cut(s)	1475, 1699
LmnI	GCTCC	4 cut(s)	123, 307, 834, 1719
Lsp1109I	GCAGC	5 cut(s)	44, 77, 277, 949, 952
LweI	GCATC	1 cut(s)	1170
MaeI	CTAG	4 cut(s)	110, 524, 681, 1509
MaeII	ACGT	5 cut(s)	760, 991, 1129, 1386, 1608
MaeIII	GTNAC	4 cut(s)	611, 701, 1017, 1497
MalI	GATC	4 cut(s)	114, 167, 672, 1103
MboI	GATC	4 cut(s)	112, 165, 670, 1101
MhlI	GDGCHC	3 cut(s)	1301, 1600, 1694
MluCI	AATT	3 cut(s)	1047, 1262, 1317
Mly113I	GGCGCC	1 cut(s)	277
MlyI	GAGTC	3 cut(s)	594, 748, 902
MseI	TTAA	5 cut(s)	675, 720, 1182, 1316, 1563
MspA1I	CMGCKG	1 cut(s)	57
MspI	CCGG	3 cut(s)	582, 1155, 1579
MspR9I	CCNGG	8 cut(s)	175, 797, 803, 809, 1405, 1433, 1460, 1547
Mva1269I	GAATGC	1 cut(s)	1342
MvaI	CCWGG	8 cut(s)	175, 797, 803, 809, 1405, 1433, 1460, 1547
MvnI	CGCG	2 cut(s)	129, 189
MwoI	GCNNNNNNNGC	8 cut(s)	212, 265, 271, 274, 466, 578, 853, 1518
NarI	GGCGCC	1 cut(s)	277
NcoI	CCATGG	2 cut(s)	280, 451
NdeII	GATC	4 cut(s)	112, 165, 670, 1101
NheI	GCTAGC	1 cut(s)	1508
NlaIII	CATG	4 cut(s)	284, 455, 473, 1333
NlaIV	GGNNCC	5 cut(s)	278, 749, 794, 842, 1202
NmuCI	GTSAC	2 cut(s)	611, 1017
NruI	TCGCGA	1 cut(s)	129
NsbI	TGCGCA	1 cut(s)	936
NspI	RCATGY	1 cut(s)	1333
NspV	TTCGAA	2 cut(s)	222, 516
PceI	AGGCCT	1 cut(s)	1123
PciSI	GCTCTTC	2 cut(s)	1475, 1699
PctI	GAATGC	1 cut(s)	1342
PfeI	GAWTC	4 cut(s)	170, 227, 687, 1654
PflFI	GACNNNGTC	1 cut(s)	1610
PkrI	GCNGC	7 cut(s)	59, 67, 267, 276, 939, 942, 1011
PleI	GAGTC	3 cut(s)	593, 747, 902
PluTI	GGCGCC	1 cut(s)	280
PmaCI	CACGTG	1 cut(s)	1130
PmlI	CACGTG	1 cut(s)	1130
PpsI	GAGTC	3 cut(s)	593, 747, 902
Ppu21I	YACGTR	1 cut(s)	1130
PshAI	GACNNNNGTC	1 cut(s)	1586
PshBI	ATTAAT	1 cut(s)	1316
Psp124BI	GAGCTC	2 cut(s)	1301, 1694
Psp6I	CCWGG	8 cut(s)	173, 795, 801, 807, 1403, 1431, 1458, 1545
PspCI	CACGTG	1 cut(s)	1130
PspEI	GGTNACC	2 cut(s)	611, 701
PspGI	CCWGG	8 cut(s)	173, 795, 801, 807, 1403, 1431, 1458, 1545
PspN4I	GGNNCC	5 cut(s)	278, 749, 794, 842, 1202
PspPI	GGNCC	7 cut(s)	597, 748, 793, 799, 805, 811, 1581
PstNI	CAGNNNCTG	1 cut(s)	594
PsyI	GACNNNGTC	1 cut(s)	1610
PvuII	CAGCTG	1 cut(s)	57
RruI	TCGCGA	1 cut(s)	129
RsaI	GTAC	3 cut(s)	1202, 1382, 1529
RsaNI	GTAC	3 cut(s)	1201, 1381, 1528
SacI	GAGCTC	2 cut(s)	1301, 1694
SapI	GCTCTTC	2 cut(s)	1475, 1699
SaqAI	TTAA	5 cut(s)	675, 720, 1182, 1316, 1563
SatI	GCNGC	7 cut(s)	58, 66, 266, 275, 938, 941, 1010
Sau3AI	GATC	4 cut(s)	112, 165, 670, 1101
Sau96I	GGNCC	7 cut(s)	597, 748, 793, 799, 805, 811, 1581
SchI	GAGTC	3 cut(s)	594, 748, 902
ScrFI	CCNGG	8 cut(s)	175, 797, 803, 809, 1405, 1433, 1460, 1547
SduI	GDGCHC	3 cut(s)	1301, 1600, 1694
SfaNI	GCATC	1 cut(s)	1170
SfcI	CTRYAG	2 cut(s)	12, 1345
SfoI	GGCGCC	1 cut(s)	278
SfuI	TTCGAA	2 cut(s)	222, 516
SinI	GGWCC	6 cut(s)	597, 793, 799, 805, 811, 1581
SmlI	CTYRAG	2 cut(s)	1076, 1300
SmoI	CTYRAG	2 cut(s)	1076, 1300
Sse9I	AATT	3 cut(s)	1047, 1262, 1317
SseBI	AGGCCT	1 cut(s)	1123
SsiI	CCGC	7 cut(s)	142, 158, 187, 274, 1010, 1456, 1594
SspDI	GGCGCC	1 cut(s)	276
SspI	AATATT	1 cut(s)	1114
SspMI	CTAG	4 cut(s)	110, 524, 681, 1509
SstI	GAGCTC	2 cut(s)	1301, 1694
StuI	AGGCCT	1 cut(s)	1123
StyD4I	CCNGG	8 cut(s)	173, 795, 801, 807, 1403, 1431, 1458, 1545
StyI	CCWWGG	4 cut(s)	280, 451, 680, 724
TaaI	ACNGT	4 cut(s)	611, 1017, 1292, 1681
TaiI	ACGT	5 cut(s)	763, 994, 1132, 1389, 1611
TaqI	TCGA	7 cut(s)	168, 222, 516, 544, 742, 921, 1393
TaqII	GACCGA	1 cut(s)	1653
TasI	AATT	3 cut(s)	1047, 1262, 1317
TatI	WGTACW	2 cut(s)	1380, 1527
TauI	GCSGC	2 cut(s)	277, 1012
TfiI	GAWTC	4 cut(s)	170, 227, 687, 1654
Tru1I	TTAA	5 cut(s)	675, 720, 1182, 1316, 1563
Tru9I	TTAA	5 cut(s)	675, 720, 1182, 1316, 1563
TscAI	CASTG	2 cut(s)	1361, 1500
TseFI	GTSAC	2 cut(s)	611, 1017
TseI	GCWGC	5 cut(s)	57, 65, 265, 937, 940
Tsp45I	GTSAC	2 cut(s)	611, 1017
TspDTI	ATGAA	3 cut(s)	258, 345, 1462
TspRI	CASTG	2 cut(s)	1361, 1500
Tth111I	GACNNNGTC	1 cut(s)	1610
VpaK11BI	GGWCC	6 cut(s)	597, 793, 799, 805, 811, 1581
VspI	ATTAAT	1 cut(s)	1316
XapI	RAATTY	1 cut(s)	1047
XceI	RCATGY	1 cut(s)	1333
XcmI	CCANNNNNNNNNTGG	1 cut(s)	758
XmaJI	CCTAGG	1 cut(s)	680
XmiI	GTMKAC	1 cut(s)	1246
XspI	CTAG	4 cut(s)	110, 524, 681, 1509
ZraI	GACGTC	2 cut(s)	992, 1609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.