Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Reverse (-)

18830983 .. 18833234

Gene Structure 2252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012443

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1899 bp

ATGGCTTCAGACTCTTCACAGATCATGTTATACTCATCTTTCCCTCTTCACCTTCTCCATCCTATAAATACCAACACCTTCTACTCGCCACTTCACCACAACTGGCCAGCTATCTCTCTGATCATTACAATGGCTAAGCCTATAGCTCTCGCCTTTTCTCTTTGCTTGCTTGTCCTCTTCCACAGCTGCTTAGCAGCTCGCCAACAATCTCAATCAAGCCAGCAGAACGAGTGCCAACTAGATCAGCTCCAAGCTCGCGAACCTGATAATCGCATTGAGACTGAAGCGGGTAGGATCGAATCCTGGGACTACAACCGCGACGACTTCCAGTGTGCTGGTGTTGCCGTTCAACGAATCACCATTGAAAGAAATGGCCTTCACTTGCCTTCTTACACCCACGCTCCACAACTCATTTACATAGTCCAAGGAAGTGGTTTTCTATCTGCTGTATTCCCTGGCTGTCCTGAGACTTTCGAAGAATCTGAACAATCTGATGAAGAACAACAATGGCAAGGGCAACAGGGGCGCCATGGACAGCAAGGCCGTGGACAACAGGAGCAGAAAGAACAGGAAGAGTATGAACAAGAACAACGCCAACGCCAACGCCACCGCCAACAGGGACAACAAGGCCGTGGACAACGGGGTCAACAAGAGCAAGAAGAGGAAGAACAACAACAACGACAACGCCAACGCCAACAGGGACAACAAGGCCATGGACAGCATGATAGACAACAAGGACAGCAAGGCCAACAGGGACAAGAGAGCTTCGAACAGCTAGACAGACACCAGAAGGTTCGACGCATAAAAGAAGGTGATATTGTTGCTATTCCTGCCGGAGTCAGCTACTGGTCCTACAATGACGGTGACCAACCTCTTGTTGCTGTCAGTCTTCTTGACATCGGCAACAACCAAAACCAGCTTGATCGTAACCCTAGGAGATTCTATCTTGCTGGTAACCCACAAGATGAGTTTAACCAAGGGCAAAGCCAGAGTCGAAGGGGCCAGCAAGGACGTGGAAAACAAGGGCAAGGCCAAAGTCAATGGGACCAGGACCAGGACCAGCAACAGCAACAGCAAGGAGGAAGGAGCAGGCACCAGCAACAACAGCAAGGAAACAACAACAACATCTTCGCTGGCTTCAACACACAGCTCCTCGCTGACTCTCTGAACATCGACCAACAGACTGCGCAGCAACTTCAGGGACAAAACGACAACAGACCCCAAATCGTCAGAGTTAGAGGACGTCTTGATTTTATCCAGCCGCCACAGTCACAACAGGAGGAAAGACAAGAACAGGGAATTCAGAGACAACAGGGACAGAATGGTCTTGAGGAAACTCTCTGCAACTGGAAGATCAGAGAGAATATTGGCAGGCCTTCACGTGCTGACGTCTTCAGTCCCCAAGCCGGTCGCATCAGCACCCTCAACAGCTTTAAGTTGCCTATTCTCAGGTACCTAGGCCTCAGCGCTGAGAGAGGCTTCTTCTACAATAATGCTATCTACAGCCCACACTGGAACTTGAACGCCCACGAAGTGTACTACGTCATTCGAGGTAGCGCTAGGGTTCAGGTTGTGAACGACAACGGCCAGGCCATCTTGGACAACGAAGTCCGCCAGGGACAGCTCTTCATTGTGCCACAGAACCACGCAGTGTTACAAAAGGCTAGCAACAACGGCTACGAGTACATTGCCTTCAAGACCCAGGACAATGCCAAGATTAACACTCTGGCAGGCCGGACCTCAGTCCTGCGGGCACTCCCCGACGTCGTCCTTGCTAACGCATACCAGATTGACCGACAACAGGCAAGGAATCTCAAATACAACAGACAGGAGACTGTTGTTGCTTTGAGCTCTTCAAGGTCTTCCCAATCCCAGAGGAGCTGGTGGGCTAATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

633

Amino Acids

72.45

Weight (kDa)

6.62

Isoelectric Point (pI)

66.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	84 - 320	4.9e-24	Cupin
Cupin_1	PF00190	455 - 602	1.2e-40	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	642, 1323, 1607
AatII	GACGTC	3 cut(s)	1246, 1392, 1767
Acc16I	TGCGCA	1 cut(s)	1188
Acc65I	GGTACC	1 cut(s)	1452
AccB1I	GGYRCC	3 cut(s)	525, 1092, 1452
AccII	CGCG	2 cut(s)	258, 318
AciI	CCGC	6 cut(s)	287, 316, 610, 1262, 1612, 1750
AclWI	GGATC	1 cut(s)	302
AcoI	YGGCCR	2 cut(s)	104, 1585
AcsI	RAATTY	1 cut(s)	1299
AcuI	CTGAAG	3 cut(s)	303, 1181, 1378
AcvI	CACGTG	1 cut(s)	1382
AcyI	GRCGYC	4 cut(s)	526, 1243, 1389, 1764
AdeI	CACNNNGTG	2 cut(s)	1534, 1651
AfaI	GTAC	3 cut(s)	1454, 1538, 1685
AfeI	AGCGCT	2 cut(s)	1468, 1558
AfiI	CCNNNNNNNGG	4 cut(s)	616, 1054, 1406, 1801
AgsI	TTSAA	6 cut(s)	350, 365, 1141, 1522, 1696, 1857
AjiI	CACGTC	1 cut(s)	1013
AjnI	CCWGG	7 cut(s)	302, 454, 1047, 1053, 1587, 1614, 1701
Alw21I	GWGCWC	1 cut(s)	1853
Alw26I	GTCTC	4 cut(s)	272, 461, 1300, 1826
AlwI	GGATC	1 cut(s)	302
AlwNI	CAGNNNCTG	1 cut(s)	846
Aor51HI	AGCGCT	2 cut(s)	1468, 1558
ApeKI	GCWGC	3 cut(s)	186, 194, 1189
ApoI	RAATTY	1 cut(s)	1299
ArsI	GACNNNNNNTTYG	2 cut(s)	976, 1008
Asp718I	GGTACC	1 cut(s)	1452
AspA2I	CCTAGG	2 cut(s)	932, 1456
AspLEI	GCGC	4 cut(s)	528, 1189, 1469, 1559
AspS9I	GGNCC	6 cut(s)	849, 1000, 1045, 1051, 1057, 1737
AsuHPI	GGTGA	5 cut(s)	41, 86, 349, 824, 875
AsuII	TTCGAA	2 cut(s)	474, 768
AsuNHI	GCTAGC	1 cut(s)	1664
AvaII	GGWCC	5 cut(s)	849, 1045, 1051, 1057, 1737
AvrII	CCTAGG	2 cut(s)	932, 1456
BaeGI	GKGCMC	1 cut(s)	1756
BalI	TGGCCA	1 cut(s)	106
BanI	GGYRCC	3 cut(s)	525, 1092, 1452
BanII	GRGCYC	1 cut(s)	1853
BarI	GAAGNNNNNNTAC	2 cut(s)	1676, 1708
BbrPI	CACGTG	1 cut(s)	1382
BbsI	GAAGAC	3 cut(s)	881, 1384, 1854
Bbv12I	GWGCWC	1 cut(s)	1853
BbvCI	CCTCAGC	1 cut(s)	1463
BbvI	GCAGC	3 cut(s)	173, 206, 1201
BccI	CCATC	2 cut(s)	66, 1601
BceAI	ACGGC	5 cut(s)	329, 528, 615, 1600, 1690
BcgI	CGANNNNNNTGC	2 cut(s)	1670, 1704
BciT130I	CCWGG	7 cut(s)	304, 456, 1049, 1055, 1589, 1616, 1703
BclI	TGATCA	1 cut(s)	120
BcoDI	GTCTC	4 cut(s)	272, 461, 1300, 1826
BfaI	CTAG	6 cut(s)	239, 776, 933, 1457, 1560, 1665
BfmI	CTRYAG	2 cut(s)	141, 1501
BfoI	RGCGCY	3 cut(s)	529, 1470, 1560
BisI	GCNGC	4 cut(s)	187, 195, 1190, 1262
BlnI	CCTAGG	2 cut(s)	932, 1456
BlpI	GCTNAGC	2 cut(s)	135, 190
BlsI	GCNGC	4 cut(s)	188, 196, 1191, 1263
Bme1390I	CCNGG	7 cut(s)	304, 456, 1049, 1055, 1589, 1616, 1703
Bme18I	GGWCC	5 cut(s)	849, 1045, 1051, 1057, 1737
BmgBI	CACGTC	1 cut(s)	1013
BmgT120I	GGNCC	6 cut(s)	849, 1000, 1045, 1051, 1057, 1737
BmiI	GGNNCC	5 cut(s)	527, 1001, 1046, 1094, 1454
BmrFI	CCNGG	7 cut(s)	304, 456, 1049, 1055, 1589, 1616, 1703
BmsI	GCATC	1 cut(s)	1422
BmtI	GCTAGC	1 cut(s)	1668
BoxI	GACNNNNGTC	1 cut(s)	1742
BpiI	GAAGAC	3 cut(s)	881, 1384, 1854
Bpu10I	CCTNAGC	1 cut(s)	1463
Bpu1102I	GCTNAGC	2 cut(s)	135, 190
Bpu14I	TTCGAA	2 cut(s)	474, 768
BpuEI	CTTGAG	1 cut(s)	1349
BsaAI	YACGTR	1 cut(s)	1382
BsaHI	GRCGYC	4 cut(s)	526, 1243, 1389, 1764
BsaXI	ACNNNNNCTCC	2 cut(s)	385, 415
Bsc4I	CCNNNNNNNGG	4 cut(s)	616, 1054, 1406, 1801
Bse118I	RCCGGY	1 cut(s)	1406
Bse1I	ACTGG	5 cut(s)	107, 328, 851, 1352, 1517
Bse3DI	GCAATG	1 cut(s)	1686
BseBI	CCWGG	7 cut(s)	304, 456, 1049, 1055, 1589, 1616, 1703
BseGI	GGATG	1 cut(s)	58
BseLI	CCNNNNNNNGG	4 cut(s)	616, 1054, 1406, 1801
BseMI	GCAATG	1 cut(s)	1686
BseMII	CTCAG	5 cut(s)	456, 1461, 1462, 1477, 1755
BseNI	ACTGG	5 cut(s)	107, 328, 851, 1352, 1517
BseRI	GAGGAG	2 cut(s)	1142, 1891
BseSI	GKGCMC	1 cut(s)	1756
BseXI	GCAGC	3 cut(s)	173, 206, 1201
Bsh1236I	CGCG	2 cut(s)	258, 318
Bsh1285I	CGRYCG	1 cut(s)	1411
BshNI	GGYRCC	3 cut(s)	525, 1092, 1452
BsiEI	CGRYCG	1 cut(s)	1411
BsiHKAI	GWGCWC	1 cut(s)	1853
BsiSI	CCGG	3 cut(s)	834, 1407, 1735
BslFI	GGGAC	9 cut(s)	320, 633, 714, 768, 1058, 1215, 1329, 1383, 1632
BslI	CCNNNNNNNGG	4 cut(s)	616, 1054, 1406, 1801
BsmAI	GTCTC	4 cut(s)	272, 461, 1300, 1826
BsmFI	GGGAC	9 cut(s)	320, 633, 714, 768, 1058, 1215, 1329, 1383, 1632
Bsp119I	TTCGAA	2 cut(s)	474, 768
Bsp1286I	GDGCHC	2 cut(s)	1756, 1853
Bsp143I	GATC	6 cut(s)	21, 120, 241, 294, 922, 1353
Bsp1720I	GCTNAGC	2 cut(s)	135, 190
Bsp19I	CCATGG	2 cut(s)	529, 712
Bsp68I	TCGCGA	1 cut(s)	258
BspACI	CCGC	6 cut(s)	287, 316, 610, 1262, 1612, 1750
BspCNI	CTCAG	5 cut(s)	457, 1461, 1462, 1476, 1754
BspFNI	CGCG	2 cut(s)	258, 318
BspLI	GGNNCC	5 cut(s)	527, 1001, 1046, 1094, 1454
BspOI	GCTAGC	1 cut(s)	1668
BspPI	GGATC	1 cut(s)	302
BspQI	GCTCTTC	2 cut(s)	1631, 1858
BspT104I	TTCGAA	2 cut(s)	474, 768
BspT107I	GGYRCC	3 cut(s)	525, 1092, 1452
BsrDI	GCAATG	1 cut(s)	1686
BsrFI	RCCGGY	1 cut(s)	1406
BsrI	ACTGG	5 cut(s)	107, 328, 851, 1352, 1517
BssAI	RCCGGY	1 cut(s)	1406
BssMI	GATC	6 cut(s)	21, 120, 241, 294, 922, 1353
BssNI	GRCGYC	4 cut(s)	526, 1243, 1389, 1764
BssT1I	CCWWGG	6 cut(s)	424, 529, 712, 932, 976, 1456
Bst2UI	CCWGG	7 cut(s)	304, 456, 1049, 1055, 1589, 1616, 1703
Bst4CI	ACNGT	3 cut(s)	863, 1269, 1837
Bst6I	CTCTTC	7 cut(s)	19, 51, 182, 567, 654, 1631, 1858
BstACI	GRCGYC	4 cut(s)	526, 1243, 1389, 1764
BstBAI	YACGTR	1 cut(s)	1382
BstBI	TTCGAA	2 cut(s)	474, 768
BstDEI	CTNAG	7 cut(s)	135, 190, 465, 1448, 1463, 1470, 1741
BstDSI	CCRYGG	4 cut(s)	529, 544, 631, 712
BstEII	GGTNACC	2 cut(s)	863, 953
BstF5I	GGATG	1 cut(s)	58
BstFNI	CGCG	2 cut(s)	258, 318
BstH2I	RGCGCY	3 cut(s)	529, 1470, 1560
BstHHI	GCGC	4 cut(s)	528, 1189, 1469, 1559
BstKTI	GATC	6 cut(s)	24, 123, 244, 297, 925, 1356
BstMAI	GTCTC	4 cut(s)	272, 461, 1300, 1826
BstMBI	GATC	6 cut(s)	21, 120, 241, 294, 922, 1353
BstMCI	CGRYCG	1 cut(s)	1411
BstMWI	GCNNNNNNNGC	5 cut(s)	341, 523, 830, 1105, 1674
BstNI	CCWGG	7 cut(s)	304, 456, 1049, 1055, 1589, 1616, 1703
BstPAI	GACNNNNGTC	1 cut(s)	1742
BstPI	GGTNACC	2 cut(s)	863, 953
BstSCI	CCNGG	7 cut(s)	302, 454, 1047, 1053, 1587, 1614, 1701
BstSFI	CTRYAG	2 cut(s)	141, 1501
BstSLI	GKGCMC	1 cut(s)	1756
BstUI	CGCG	2 cut(s)	258, 318
BstV1I	GCAGC	3 cut(s)	173, 206, 1201
BstV2I	GAAGAC	3 cut(s)	881, 1384, 1854
BstXI	CCANNNNNNTGG	2 cut(s)	335, 431
BtgI	CCRYGG	4 cut(s)	529, 544, 631, 712
BtrI	CACGTC	1 cut(s)	1013
BtsCI	GGATG	1 cut(s)	58
BtsI	GCAGTG	1 cut(s)	1656
BtsIMutI	CAGTG	3 cut(s)	335, 1510, 1656
BtuMI	TCGCGA	1 cut(s)	258
CaiI	CAGNNNCTG	1 cut(s)	846
CfoI	GCGC	4 cut(s)	528, 1189, 1469, 1559
Cfr10I	RCCGGY	1 cut(s)	1406
Cfr13I	GGNCC	6 cut(s)	849, 1000, 1045, 1051, 1057, 1737
CseI	GACGC	1 cut(s)	807
Csp6I	GTAC	3 cut(s)	1453, 1537, 1684
CviAII	CATG	4 cut(s)	25, 530, 713, 722
CviQI	GTAC	3 cut(s)	1453, 1537, 1684
DdeI	CTNAG	7 cut(s)	135, 190, 465, 1448, 1463, 1470, 1741
DinI	GGCGCC	1 cut(s)	527
DpnI	GATC	6 cut(s)	23, 122, 243, 296, 924, 1355
DpnII	GATC	6 cut(s)	21, 120, 241, 294, 922, 1353
DraIII	CACNNNGTG	2 cut(s)	1534, 1651
DrdI	GACNNNNNNGTC	3 cut(s)	642, 1323, 1607
DseDI	GACNNNNNNGTC	3 cut(s)	642, 1323, 1607
EaeI	YGGCCR	2 cut(s)	104, 1585
Eam1104I	CTCTTC	7 cut(s)	19, 51, 182, 567, 654, 1631, 1858
EarI	CTCTTC	7 cut(s)	19, 51, 182, 567, 654, 1631, 1858
EciI	GGCGGA	1 cut(s)	1601
Ecl136II	GAGCTC	1 cut(s)	1851
Eco130I	CCWWGG	6 cut(s)	424, 529, 712, 932, 976, 1456
Eco147I	AGGCCT	2 cut(s)	1375, 1461
Eco24I	GRGCYC	1 cut(s)	1853
Eco47I	GGWCC	5 cut(s)	849, 1045, 1051, 1057, 1737
Eco47III	AGCGCT	2 cut(s)	1468, 1558
Eco53kI	GAGCTC	1 cut(s)	1851
Eco57I	CTGAAG	3 cut(s)	303, 1181, 1378
Eco72I	CACGTG	1 cut(s)	1382
Eco91I	GGTNACC	2 cut(s)	863, 953
EcoICRI	GAGCTC	1 cut(s)	1851
EcoO65I	GGTNACC	2 cut(s)	863, 953
EcoRI	GAATTC	1 cut(s)	1299
EcoRII	CCWGG	7 cut(s)	302, 454, 1047, 1053, 1587, 1614, 1701
EcoT14I	CCWWGG	6 cut(s)	424, 529, 712, 932, 976, 1456
EcoT22I	ATGCAT	1 cut(s)	1897
EcoT38I	GRGCYC	1 cut(s)	1853
EgeI	GGCGCC	1 cut(s)	527
EheI	GGCGCC	1 cut(s)	527
ErhI	CCWWGG	6 cut(s)	424, 529, 712, 932, 976, 1456
FaeI	CATG	4 cut(s)	28, 533, 716, 725
FaqI	GGGAC	9 cut(s)	320, 633, 714, 768, 1058, 1215, 1329, 1383, 1632
FatI	CATG	4 cut(s)	24, 529, 712, 721
FauI	CCCGC	2 cut(s)	280, 1743
FbaI	TGATCA	1 cut(s)	120
Fnu4HI	GCNGC	4 cut(s)	187, 195, 1190, 1262
FokI	GGATG	1 cut(s)	45
FriOI	GRGCYC	1 cut(s)	1853
Fsp4HI	GCNGC	4 cut(s)	187, 195, 1190, 1262
FspBI	CTAG	6 cut(s)	239, 776, 933, 1457, 1560, 1665
FspI	TGCGCA	1 cut(s)	1188
GlaI	GCGC	4 cut(s)	527, 1188, 1468, 1558
GluI	GCNGC	4 cut(s)	187, 195, 1190, 1262
HaeII	RGCGCY	3 cut(s)	529, 1470, 1560
HapII	CCGG	3 cut(s)	834, 1407, 1735
HgaI	GACGC	1 cut(s)	807
HhaI	GCGC	4 cut(s)	528, 1189, 1469, 1559
Hin1I	GRCGYC	4 cut(s)	526, 1243, 1389, 1764
Hin1II	CATG	4 cut(s)	28, 533, 716, 725
Hin6I	GCGC	4 cut(s)	526, 1187, 1467, 1557
HinP1I	GCGC	4 cut(s)	526, 1187, 1467, 1557
HincII	GTYRAC	1 cut(s)	647
HindII	GTYRAC	1 cut(s)	647
HinfI	GANTC	9 cut(s)	11, 299, 354, 479, 837, 939, 991, 1160, 1810
HpaII	CCGG	3 cut(s)	834, 1407, 1735
HphI	GGTGA	5 cut(s)	41, 86, 349, 824, 875
Hpy166II	GTNNAC	5 cut(s)	548, 635, 647, 1537, 1576
Hpy188I	TCNGA	8 cut(s)	10, 120, 484, 493, 1167, 1232, 1305, 1358
Hpy188III	TCNNGA	6 cut(s)	257, 464, 893, 1247, 1328, 1696
Hpy8I	GTNNAC	5 cut(s)	548, 635, 647, 1537, 1576
Hpy99I	CGWCG	4 cut(s)	323, 801, 1766, 1769
HpyCH4III	ACNGT	3 cut(s)	863, 1269, 1837
HpyCH4IV	ACGT	6 cut(s)	1012, 1243, 1381, 1389, 1542, 1764
HpyCH4V	TGCA	2 cut(s)	1344, 1895
HpyF10VI	GCNNNNNNNGC	5 cut(s)	341, 523, 830, 1105, 1674
HpyF3I	CTNAG	7 cut(s)	135, 190, 465, 1448, 1463, 1470, 1741
HpySE526I	ACGT	6 cut(s)	1012, 1243, 1381, 1389, 1542, 1764
Hsp92I	GRCGYC	4 cut(s)	526, 1243, 1389, 1764
Hsp92II	CATG	4 cut(s)	28, 533, 716, 725
HspAI	GCGC	4 cut(s)	526, 1187, 1467, 1557
KasI	GGCGCC	1 cut(s)	525
KpnI	GGTACC	1 cut(s)	1456
Ksp22I	TGATCA	1 cut(s)	120
Kzo9I	GATC	6 cut(s)	21, 120, 241, 294, 922, 1353
LguI	GCTCTTC	2 cut(s)	1631, 1858
LmnI	GCTCC	6 cut(s)	252, 406, 556, 1086, 1155, 1878
Lsp1109I	GCAGC	3 cut(s)	173, 206, 1201
LweI	GCATC	1 cut(s)	1422
MaeI	CTAG	6 cut(s)	239, 776, 933, 1457, 1560, 1665
MaeII	ACGT	6 cut(s)	1012, 1243, 1381, 1389, 1542, 1764
MaeIII	GTNAC	5 cut(s)	863, 926, 953, 1269, 1653
MalI	GATC	6 cut(s)	23, 122, 243, 296, 924, 1355
MboI	GATC	6 cut(s)	21, 120, 241, 294, 922, 1353
MhlI	GDGCHC	2 cut(s)	1756, 1853
MlsI	TGGCCA	1 cut(s)	106
MluCI	AATT	1 cut(s)	1299
MluNI	TGGCCA	1 cut(s)	106
Mly113I	GGCGCC	1 cut(s)	526
MlyI	GAGTC	4 cut(s)	5, 846, 1000, 1154
Mox20I	TGGCCA	1 cut(s)	106
Mph1103I	ATGCAT	1 cut(s)	1897
MscI	TGGCCA	1 cut(s)	106
MseI	TTAA	3 cut(s)	972, 1434, 1719
MslI	CAYNNNNRTG	1 cut(s)	128
Msp20I	TGGCCA	1 cut(s)	106
MspA1I	CMGCKG	1 cut(s)	186
MspI	CCGG	3 cut(s)	834, 1407, 1735
MspR9I	CCNGG	7 cut(s)	304, 456, 1049, 1055, 1589, 1616, 1703
MvaI	CCWGG	7 cut(s)	304, 456, 1049, 1055, 1589, 1616, 1703
MvnI	CGCG	2 cut(s)	258, 318
MwoI	GCNNNNNNNGC	5 cut(s)	341, 523, 830, 1105, 1674
NarI	GGCGCC	1 cut(s)	526
NcoI	CCATGG	2 cut(s)	529, 712
NdeII	GATC	6 cut(s)	21, 120, 241, 294, 922, 1353
NheI	GCTAGC	1 cut(s)	1664
NlaIII	CATG	4 cut(s)	28, 533, 716, 725
NlaIV	GGNNCC	5 cut(s)	527, 1001, 1046, 1094, 1454
NmuCI	GTSAC	2 cut(s)	863, 1269
NruI	TCGCGA	1 cut(s)	258
NsbI	TGCGCA	1 cut(s)	1188
NsiI	ATGCAT	1 cut(s)	1897
NspV	TTCGAA	2 cut(s)	474, 768
PceI	AGGCCT	2 cut(s)	1375, 1461
PciSI	GCTCTTC	2 cut(s)	1631, 1858
PfeI	GAWTC	5 cut(s)	299, 354, 479, 939, 1810
PflFI	GACNNNGTC	1 cut(s)	1766
PkrI	GCNGC	4 cut(s)	188, 196, 1191, 1263
PleI	GAGTC	4 cut(s)	5, 845, 999, 1154
PluTI	GGCGCC	1 cut(s)	529
PmaCI	CACGTG	1 cut(s)	1382
PmlI	CACGTG	1 cut(s)	1382
PpsI	GAGTC	4 cut(s)	5, 845, 999, 1154
Ppu21I	YACGTR	1 cut(s)	1382
PshAI	GACNNNNGTC	1 cut(s)	1742
Psp124BI	GAGCTC	1 cut(s)	1853
Psp6I	CCWGG	7 cut(s)	302, 454, 1047, 1053, 1587, 1614, 1701
PspCI	CACGTG	1 cut(s)	1382
PspEI	GGTNACC	2 cut(s)	863, 953
PspGI	CCWGG	7 cut(s)	302, 454, 1047, 1053, 1587, 1614, 1701
PspN4I	GGNNCC	5 cut(s)	527, 1001, 1046, 1094, 1454
PspPI	GGNCC	6 cut(s)	849, 1000, 1045, 1051, 1057, 1737
PstNI	CAGNNNCTG	1 cut(s)	846
PsyI	GACNNNGTC	1 cut(s)	1766
PvuII	CAGCTG	1 cut(s)	186
RruI	TCGCGA	1 cut(s)	258
RsaI	GTAC	3 cut(s)	1454, 1538, 1685
RsaNI	GTAC	3 cut(s)	1453, 1537, 1684
RseI	CAYNNNNRTG	1 cut(s)	128
SacI	GAGCTC	1 cut(s)	1853
SapI	GCTCTTC	2 cut(s)	1631, 1858
SaqAI	TTAA	3 cut(s)	972, 1434, 1719
SatI	GCNGC	4 cut(s)	187, 195, 1190, 1262
Sau3AI	GATC	6 cut(s)	21, 120, 241, 294, 922, 1353
Sau96I	GGNCC	6 cut(s)	849, 1000, 1045, 1051, 1057, 1737
SchI	GAGTC	4 cut(s)	5, 846, 1000, 1154
ScrFI	CCNGG	7 cut(s)	304, 456, 1049, 1055, 1589, 1616, 1703
SduI	GDGCHC	2 cut(s)	1756, 1853
SfaNI	GCATC	1 cut(s)	1422
SfcI	CTRYAG	2 cut(s)	141, 1501
SfoI	GGCGCC	1 cut(s)	527
SfuI	TTCGAA	2 cut(s)	474, 768
SinI	GGWCC	5 cut(s)	849, 1045, 1051, 1057, 1737
SmiMI	CAYNNNNRTG	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	1328
SmoI	CTYRAG	1 cut(s)	1328
Sse9I	AATT	1 cut(s)	1299
SseBI	AGGCCT	2 cut(s)	1375, 1461
SsiI	CCGC	6 cut(s)	287, 316, 610, 1262, 1612, 1750
SspDI	GGCGCC	1 cut(s)	525
SspI	AATATT	1 cut(s)	1366
SspMI	CTAG	6 cut(s)	239, 776, 933, 1457, 1560, 1665
SstI	GAGCTC	1 cut(s)	1853
StuI	AGGCCT	2 cut(s)	1375, 1461
StyD4I	CCNGG	7 cut(s)	302, 454, 1047, 1053, 1587, 1614, 1701
StyI	CCWWGG	6 cut(s)	424, 529, 712, 932, 976, 1456
TaaI	ACNGT	3 cut(s)	863, 1269, 1837
TaiI	ACGT	6 cut(s)	1015, 1246, 1384, 1392, 1545, 1767
TaqI	TCGA	7 cut(s)	297, 474, 768, 796, 994, 1173, 1549
TaqII	GACCGA	1 cut(s)	1809
TasI	AATT	1 cut(s)	1299
TatI	WGTACW	2 cut(s)	1536, 1683
TauI	GCSGC	1 cut(s)	1264
TfiI	GAWTC	5 cut(s)	299, 354, 479, 939, 1810
Tru1I	TTAA	3 cut(s)	972, 1434, 1719
Tru9I	TTAA	3 cut(s)	972, 1434, 1719
TscAI	CASTG	3 cut(s)	335, 1517, 1656
TseFI	GTSAC	2 cut(s)	863, 1269
TseI	GCWGC	3 cut(s)	186, 194, 1189
Tsp45I	GTSAC	2 cut(s)	863, 1269
TspDTI	ATGAA	3 cut(s)	510, 594, 1618
TspRI	CASTG	3 cut(s)	335, 1517, 1656
Tth111I	GACNNNGTC	1 cut(s)	1766
VpaK11BI	GGWCC	5 cut(s)	849, 1045, 1051, 1057, 1737
XapI	RAATTY	1 cut(s)	1299
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1010
XmaJI	CCTAGG	2 cut(s)	932, 1456
XspI	CTAG	6 cut(s)	239, 776, 933, 1457, 1560, 1665
ZraI	GACGTC	3 cut(s)	1244, 1390, 1765
Zsp2I	ATGCAT	1 cut(s)	1897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.