Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Forward (+)

50197680 .. 50217145

Gene Structure 19466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG303400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAAAAAGGAACAGAAAATGAACTATACTATACTAAACTATATTTTCTTCGGCTATTTTTTGTGCCAGTCGCCAACAATCTCAGTTCAGCCAGCAAATGAGTGCCAGCTGAACCAGATCCAAGCCCGCGAGCCCGACAACCGCATTGAGTGCGAAGCAGGTCGGATCGAGTCCTGGGACTACAACCAGGATGACTTCCAGTGCGCTGGTGTCGCCGTTCAGAGAATCACCATTGAGAGCAACGGCCTTCACTTGCCATCTTACACTAACACCCCACGACTAGTTTACGTCGTCCAAGGTTGGGGTCATGTAGGAATGGTGCTCCCTGGCTGTCCCGAGACTTTTGAAGAATCCGAGCAATCTGATGAGGAACAACAGGGCCAGCAACAACAATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

132

Amino Acids

15.24

Weight (kDa)

4.45

Isoelectric Point (pI)

64.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	41 - 120	1.4e-13	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	149
AccII	CGCG	1 cut(s)	129
AciI	CCGC	2 cut(s)	127, 142
AclWI	GGATC	2 cut(s)	112, 173
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	1 cut(s)	347
AhlI	ACTAGT	1 cut(s)	280
AjnI	CCWGG	3 cut(s)	173, 186, 325
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	1 cut(s)	332
AlwI	GGATC	2 cut(s)	112, 173
Ama87I	CYCGRG	1 cut(s)	335
AoxI	GGCC	2 cut(s)	244, 379
AspLEI	GCGC	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	379
AsuHPI	GGTGA	1 cut(s)	220
AvaI	CYCGRG	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	324
BccI	CCATC	1 cut(s)	265
BceAI	ACGGC	2 cut(s)	200, 259
BciT130I	CCWGG	3 cut(s)	175, 188, 327
BcoDI	GTCTC	1 cut(s)	332
BcuI	ACTAGT	1 cut(s)	280
BfaI	CTAG	1 cut(s)	281
BfuAI	ACCTGC	1 cut(s)	149
Bme1390I	CCNGG	3 cut(s)	175, 188, 327
BmeT110I	CYCGRG	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	379
BmrFI	CCNGG	3 cut(s)	175, 188, 327
BsaJI	CCNNGG	3 cut(s)	174, 295, 325
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse1I	ACTGG	2 cut(s)	67, 199
BseBI	CCWGG	3 cut(s)	175, 188, 327
BseDI	CCNNGG	3 cut(s)	174, 295, 325
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	2 cut(s)	67, 199
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	2 cut(s)	246, 381
BsiHKAI	GWGCWC	1 cut(s)	324
BsiHKCI	CYCGRG	1 cut(s)	335
BslFI	GGGAC	2 cut(s)	191, 318
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	332
BsmFI	GGGAC	2 cut(s)	191, 318
BsnI	GGCC	2 cut(s)	246, 381
BsoBI	CYCGRG	1 cut(s)	335
Bsp1286I	GDGCHC	2 cut(s)	135, 324
Bsp143I	GATC	2 cut(s)	117, 165
BspACI	CCGC	2 cut(s)	127, 142
BspANI	GGCC	2 cut(s)	246, 381
BspCNI	CTCAG	1 cut(s)	95
BspFNI	CGCG	1 cut(s)	129
BspMI	ACCTGC	1 cut(s)	149
BspPI	GGATC	2 cut(s)	112, 173
BsrI	ACTGG	2 cut(s)	67, 199
BssECI	CCNNGG	3 cut(s)	174, 295, 325
BssMI	GATC	2 cut(s)	117, 165
BssT1I	CCWWGG	1 cut(s)	295
Bst2UI	CCWGG	3 cut(s)	175, 188, 327
BstAPI	GCANNNNNTGC	1 cut(s)	150
BstC8I	GCNNGC	5 cut(s)	93, 107, 127, 131, 383
BstDEI	CTNAG	1 cut(s)	82
BstF5I	GGATG	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	206
BstKTI	GATC	2 cut(s)	120, 168
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	2 cut(s)	117, 165
BstMWI	GCNNNNNNNGC	2 cut(s)	150, 212
BstNI	CCWGG	3 cut(s)	175, 188, 327
BstSCI	CCNGG	3 cut(s)	173, 186, 325
BstUI	CGCG	1 cut(s)	129
BstX2I	RGATCY	1 cut(s)	117
BstXI	CCANNNNNNTGG	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	117
BsuRI	GGCC	2 cut(s)	246, 381
BtsCI	GGATG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	206
BveI	ACCTGC	1 cut(s)	149
Cac8I	GCNNGC	5 cut(s)	93, 107, 127, 131, 383
CfoI	GCGC	1 cut(s)	206
Cfr13I	GGNCC	1 cut(s)	379
CviAII	CATG	1 cut(s)	308
CviJI	RGCY	8 cut(s)	54, 91, 109, 125, 133, 246, 330, 381
CviKI_1	RGCY	8 cut(s)	54, 91, 109, 125, 133, 246, 330, 381
DdeI	CTNAG	1 cut(s)	82
DpnI	GATC	2 cut(s)	119, 167
DpnII	GATC	2 cut(s)	117, 165
Eco130I	CCWWGG	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	135
Eco88I	CYCGRG	1 cut(s)	335
EcoRII	CCWGG	3 cut(s)	173, 186, 325
EcoT14I	CCWWGG	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	1 cut(s)	311
FaiI	YATR	4 cut(s)	27, 32, 42, 309
FaqI	GGGAC	2 cut(s)	191, 318
FatI	CATG	1 cut(s)	307
FauI	CCCGC	1 cut(s)	134
FokI	GGATG	1 cut(s)	203
FriOI	GRGCYC	1 cut(s)	135
FspBI	CTAG	1 cut(s)	281
GlaI	GCGC	1 cut(s)	205
HaeIII	GGCC	2 cut(s)	246, 381
HhaI	GCGC	1 cut(s)	206
Hin1II	CATG	1 cut(s)	311
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HinfI	GANTC	3 cut(s)	170, 225, 350
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	4 cut(s)	165, 222, 355, 364
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	1 cut(s)	286
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	257
HpyCH4IV	ACGT	1 cut(s)	288
HpyF10VI	GCNNNNNNNGC	2 cut(s)	150, 212
HpyF3I	CTNAG	1 cut(s)	82
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	1 cut(s)	311
HspAI	GCGC	1 cut(s)	204
Kzo9I	GATC	2 cut(s)	117, 165
LmnI	GCTCC	1 cut(s)	327
MaeI	CTAG	1 cut(s)	281
MaeII	ACGT	1 cut(s)	288
MalI	GATC	2 cut(s)	119, 167
MboI	GATC	2 cut(s)	117, 165
MboII	GAAGA	2 cut(s)	40, 359
MflI	RGATCY	1 cut(s)	117
MhlI	GDGCHC	2 cut(s)	135, 324
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	1 cut(s)	361
MspA1I	CMGCKG	1 cut(s)	109
MspR9I	CCNGG	3 cut(s)	175, 188, 327
MvaI	CCWGG	3 cut(s)	175, 188, 327
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	150, 212
NdeII	GATC	2 cut(s)	117, 165
NlaIII	CATG	1 cut(s)	311
PfeI	GAWTC	2 cut(s)	225, 350
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
Psp6I	CCWGG	3 cut(s)	173, 186, 325
PspGI	CCWGG	3 cut(s)	173, 186, 325
PspPI	GGNCC	1 cut(s)	379
PsuI	RGATCY	1 cut(s)	117
PvuII	CAGCTG	1 cut(s)	109
Sau3AI	GATC	2 cut(s)	117, 165
Sau96I	GGNCC	1 cut(s)	379
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	3 cut(s)	175, 188, 327
SduI	GDGCHC	2 cut(s)	135, 324
SetI	ASST	4 cut(s)	111, 163, 291, 301
SpeI	ACTAGT	1 cut(s)	280
SsiI	CCGC	2 cut(s)	127, 142
SspMI	CTAG	1 cut(s)	281
StyD4I	CCNGG	3 cut(s)	173, 186, 325
StyI	CCWWGG	1 cut(s)	295
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	1 cut(s)	168
TfiI	GAWTC	2 cut(s)	225, 350
TscAI	CASTG	1 cut(s)	206
TspDTI	ATGAA	2 cut(s)	17, 35
TspRI	CASTG	1 cut(s)	206
XspI	CTAG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.