Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Forward (+)

6460957 .. 6461307

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1078200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGTGTACGGAATCAGAGGAAGCGCAAGTGTTCAGGTTGTGAACGAGAACGACAACCCGATCTTGGACGACCAAGTGCAGGAGGGACTATTGTTCATCGTGCCTCAGAACCACGGAGTGATCACGCAGGCCGGCAACAAGGGATTCGAGTACATCGCCTACAAGACCACTGACAACGCCATGATCATCACTCTTGCTGGGTTGACTTCCATACTACGCGCACTGCCGCTGGAAGTGCTTGCCAACGCTTACCAGATTCACCGCCAGCAGGCCCAGCAGCTCAAGTACAATAGGCCGGAGACCATTGCCTTGAGCTCCAGCCAGTCTTTCCAGATGAGGGTAGTTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

117

Amino Acids

12.82

Weight (kDa)

6.04

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	2 - 91	3.8e-18	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	219
AciI	CCGC	2 cut(s)	227, 262
AdeI	CACNNNGTG	1 cut(s)	118
AfaI	GTAC	3 cut(s)	8, 152, 287
AfiI	CCNNNNNNNGG	4 cut(s)	64, 79, 268, 337
AluBI	AGCT	2 cut(s)	280, 315
AluI	AGCT	2 cut(s)	280, 315
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	1 cut(s)	293
AoxI	GGCC	3 cut(s)	129, 270, 293
ApeKI	GCWGC	1 cut(s)	277
AspLEI	GCGC	2 cut(s)	26, 221
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	289
BclI	TGATCA	2 cut(s)	120, 183
BcoDI	GTCTC	1 cut(s)	293
BisI	GCNGC	2 cut(s)	227, 278
BlsI	GCNGC	2 cut(s)	228, 279
BmgT120I	GGNCC	1 cut(s)	271
BpmI	CTGGAG	1 cut(s)	301
BpuEI	CTTGAG	2 cut(s)	266, 331
BsaI	GGTCTC	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 79, 268, 337
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	322
Bse3DI	GCAATG	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	112
BseLI	CCNNNNNNNGG	4 cut(s)	64, 79, 268, 337
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	119
BseNI	ACTGG	1 cut(s)	322
BseXI	GCAGC	1 cut(s)	289
BseYI	CCCAGC	2 cut(s)	197, 273
BsgI	GTGCAG	1 cut(s)	98
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	3 cut(s)	131, 272, 295
BsiHKAI	GWGCWC	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	132, 296
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	4 cut(s)	64, 79, 268, 337
BsmAI	GTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	99
BsnI	GGCC	3 cut(s)	131, 272, 295
Bso31I	GGTCTC	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	3 cut(s)	60, 120, 183
BspACI	CCGC	2 cut(s)	227, 262
BspANI	GGCC	3 cut(s)	131, 272, 295
BspCNI	CTCAG	1 cut(s)	118
BspFNI	CGCG	1 cut(s)	219
BspTNI	GGTCTC	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	303
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	322
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	3 cut(s)	60, 120, 183
BstC8I	GCNNGC	5 cut(s)	129, 133, 240, 266, 270
BstDEI	CTNAG	1 cut(s)	105
BstDSI	CCRYGG	1 cut(s)	112
BstFNI	CGCG	1 cut(s)	219
BstHHI	GCGC	2 cut(s)	26, 221
BstKTI	GATC	3 cut(s)	63, 123, 186
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	3 cut(s)	60, 120, 183
BstMWI	GCNNNNNNNGC	2 cut(s)	235, 274
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	289
BsuRI	GGCC	3 cut(s)	131, 272, 295
BtgI	CCRYGG	1 cut(s)	112
BtgZI	GCGATG	1 cut(s)	139
BtsI	GCAGTG	1 cut(s)	221
BtsIMutI	CAGTG	2 cut(s)	168, 221
Cac8I	GCNNGC	5 cut(s)	129, 133, 240, 266, 270
CfoI	GCGC	2 cut(s)	26, 221
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	271
Csp6I	GTAC	3 cut(s)	7, 151, 286
CviAII	CATG	1 cut(s)	181
CviJI	RGCY	6 cut(s)	131, 272, 280, 295, 315, 321
CviKI_1	RGCY	6 cut(s)	131, 272, 280, 295, 315, 321
CviQI	GTAC	3 cut(s)	7, 151, 286
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	3 cut(s)	62, 122, 185
DpnII	GATC	3 cut(s)	60, 120, 183
DraIII	CACNNNGTG	1 cut(s)	118
Ecl136II	GAGCTC	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	317
Eco31I	GGTCTC	1 cut(s)	293
Eco53kI	GAGCTC	1 cut(s)	315
EcoICRI	GAGCTC	1 cut(s)	315
EcoT38I	GRGCYC	1 cut(s)	317
FaeI	CATG	1 cut(s)	184
FaiI	YATR	2 cut(s)	182, 212
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	1 cut(s)	180
FbaI	TGATCA	2 cut(s)	120, 183
Fnu4HI	GCNGC	2 cut(s)	227, 278
FriOI	GRGCYC	1 cut(s)	317
Fsp4HI	GCNGC	2 cut(s)	227, 278
GlaI	GCGC	2 cut(s)	25, 220
GluI	GCNGC	2 cut(s)	227, 278
GsaI	CCCAGC	2 cut(s)	201, 277
GsuI	CTGGAG	1 cut(s)	301
HaeIII	GGCC	3 cut(s)	131, 272, 295
HapII	CCGG	2 cut(s)	132, 296
HhaI	GCGC	2 cut(s)	26, 221
Hin1II	CATG	1 cut(s)	184
Hin6I	GCGC	2 cut(s)	24, 219
HinP1I	GCGC	2 cut(s)	24, 219
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HinfI	GANTC	3 cut(s)	12, 144, 256
HpaII	CCGG	2 cut(s)	132, 296
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	3 cut(s)	7, 43, 204
Hpy188I	TCNGA	2 cut(s)	17, 108
Hpy188III	TCNNGA	1 cut(s)	331
Hpy8I	GTNNAC	3 cut(s)	7, 43, 204
HpyCH4V	TGCA	1 cut(s)	79
HpyF10VI	GCNNNNNNNGC	2 cut(s)	235, 274
HpyF3I	CTNAG	1 cut(s)	105
Hsp92II	CATG	1 cut(s)	184
HspAI	GCGC	2 cut(s)	24, 219
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
Ksp22I	TGATCA	2 cut(s)	120, 183
Kzo9I	GATC	3 cut(s)	60, 120, 183
LmnI	GCTCC	1 cut(s)	320
Lsp1109I	GCAGC	1 cut(s)	289
MalI	GATC	3 cut(s)	62, 122, 185
MboI	GATC	3 cut(s)	60, 120, 183
MhlI	GDGCHC	1 cut(s)	317
MnlI	CCTC	4 cut(s)	11, 76, 114, 330
MroNI	GCCGGC	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	229
MspI	CCGG	2 cut(s)	132, 296
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	235, 274
NaeI	GCCGGC	1 cut(s)	133
NdeII	GATC	3 cut(s)	60, 120, 183
NgoMIV	GCCGGC	1 cut(s)	131
NlaIII	CATG	1 cut(s)	184
PdiI	GCCGGC	1 cut(s)	133
PfeI	GAWTC	3 cut(s)	12, 144, 256
PkrI	GCNGC	2 cut(s)	228, 279
Psp124BI	GAGCTC	1 cut(s)	317
PspFI	CCCAGC	2 cut(s)	197, 273
PspPI	GGNCC	1 cut(s)	271
RsaI	GTAC	3 cut(s)	8, 152, 287
RsaNI	GTAC	3 cut(s)	7, 151, 286
SacI	GAGCTC	1 cut(s)	317
SatI	GCNGC	2 cut(s)	227, 278
Sau3AI	GATC	3 cut(s)	60, 120, 183
Sau96I	GGNCC	1 cut(s)	271
SduI	GDGCHC	1 cut(s)	317
SetI	ASST	3 cut(s)	39, 282, 317
SmlI	CTYRAG	2 cut(s)	281, 310
SmoI	CTYRAG	2 cut(s)	281, 310
SsiI	CCGC	2 cut(s)	227, 262
SstI	GAGCTC	1 cut(s)	317
TaqI	TCGA	1 cut(s)	147
TatI	WGTACW	2 cut(s)	150, 285
TauI	GCSGC	1 cut(s)	229
TfiI	GAWTC	3 cut(s)	12, 144, 256
TscAI	CASTG	2 cut(s)	175, 228
TseI	GCWGC	1 cut(s)	277
TspDTI	ATGAA	1 cut(s)	85
TspGWI	ACGGA	2 cut(s)	24, 129
TspRI	CASTG	2 cut(s)	175, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.