Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000311

Physical Location & Seq

Genomic Coordinates Reverse (-)

9296182 .. 9296992

Gene Structure 811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1024700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGGAGGAGGAGGCCGCGCCAACGGTTTGGAGGAGACATTCTGCAGCATGAGGCTCAAGGAGAACATCCGCGACCCTTCTAACGCCGACTTCTACAGCCCTCAGGCTGGCCGCGTTTCCGTCGTCAACAGCGGCACCCTCCCCATCCTCAGCGCTCTCCGCCTCAGCGCCGAGCATGGCGTCCTTTATAACGTAAGTAATGTTAGAAGATGGTGGGTGAACGAGAACGGAGACGCCATCTTGGACGACCAGGTCAACGAGGGACAGGTGTTCTTGATTCCCCAGAACCACGCCGTCATCACCCAGGCAGGCAACCAGGGATTCGAGTACATTTCCTTCAGGACGAATGACTTGGCCCTCATTAACACCATGGCAGGGAGGACTGCCGTGTTGAGGGCGATCCCGGAGGATGTGCTTCGCAATGCCTTCCAGATTGACCGCCAACAGGTCAGGGAATCTCAAGAACAACAGGCAGGAGACCCGAGTGTTGAGTGCCAGCTCTTCTTCCTCACGCCGACCATGGTCGATCATGGCATGAATGTGATGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010154 GO:0010431 GO:0021700 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033095 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045735 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071695 GO:0097305 GO:0097306 GO:0097708 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

184

Amino Acids

20.32

Weight (kDa)

5.02

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	74 - 151	2.2e-15	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03880 AT1G03890 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT4G28520 AT5G44120 AT5G44120 AT5G44120
fragaria_vesca	FvH4_2g21390 FvH4_2g21390 FvH4_2g21400 FvH4_2g21410 FvH4_2g21410 FvH4_2g21410 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21420 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21430 FvH4_2g21440 FvH4_3g19080
malus_domestica	MD01G1024700.v1.1 MD05G1196800.v1.1 MD05G1196900.v1.1 MD17G1078200.v1.1
prunus_persica	Prupe.8G223300_v2.0.a1 Prupe.8G223400_v2.0.a1 Prupe.8G223400_v2.0.a1
pyrus_communis	pycom05g18380 pycom05g18390
rosa_chinensis	RchiOBHm_Chr6g0287991 RchiOBHm_Chr6g0288001 RchiOBHm_Chr6g0288021 RchiOBHm_Chr6g0288031 RchiOBHm_Chr6g0288041 RchiOBHm_Chr6g0288051 RchiOBHm_Chr6g0288071
rosa_laevigata	RLG00000012441 RLG00000012443 RLG00000012444 RLG00000012446 RLG00000012447 RLG00000012448
rosa_multiflora	Rmu_co8147412.1_g000001 Rmu_co8487931.1_g000001 Rmu_co8505755.1_g000001 Rmu_sc0001117.1_g000003 Rmu_sc0001117.1_g000005 Rmu_sc0001117.1_g000011 Rmu_sc0001117.1_g000013 Rmu_sc0005266.1_g000010 Rmu_sc0010960.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252330 Rroxscaffold_7G00180530 Rroxscaffold_7G00180550 Rroxscaffold_7G00180560 Rroxscaffold_7G00180570 Rroxscaffold_7G00180580 Rroxscaffold_7G00180590
rosa_rugosa	Rorug06G0041100 Rorug06G0041200 Rorug06G0041200 Rorug06G0041400 Rorug06G0193700 Rorug06G0193700 Rorug06G0193700 Rorug06G0193800 Rorug06G0193800 Rorug06G0193900 Rorug06G0194000 Rorug06G0194100
rosa_samantha	Rh6AG303300 Rh6AG303400 Rh6AG303500 Rh6AG303700 Rh6AG303800 Rh6AG303900 Rh6AG304100 Rh6AG304200 Rh6BG309500 Rh6BG309600 Rh6BG309700 Rh6BG309900 Rh6BG310000 Rh6BG310100 Rh6BG310200 Rh6CG299600 Rh6CG299800 Rh6CG300000 Rh6CG300200 Rh6CG300300 Rh6CG317100 Rh6CG317300 Rh6CG317500 Rh6CG317700 Rh6CG317800 Rh6CG318200 Rh6DG302000 Rh6DG302100 Rh6DG302300 Rh6DG302500 Rh6DG302600 Rh6DG302700 Rh6DG303100
rosa_wichuraiana	Rw6G026230 Rw6G026240 Rw6G026260 Rw6G026280 Rw6G026300 Rw6G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	189
AasI	GACNNNNNNGTC	1 cut(s)	251
AccB1I	GGYRCC	1 cut(s)	134
AccII	CGCG	3 cut(s)	18, 72, 114
AciI	CCGC	6 cut(s)	16, 70, 112, 132, 160, 439
AclWI	GGATC	1 cut(s)	394
AcoI	YGGCCR	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	322
AcyI	GRCGYC	2 cut(s)	180, 234
AfaI	GTAC	1 cut(s)	329
AfeI	AGCGCT	1 cut(s)	154
AfiI	CCNNNNNNNGG	4 cut(s)	107, 375, 393, 445
AjnI	CCWGG	3 cut(s)	249, 303, 315
AluBI	AGCT	1 cut(s)	499
AluI	AGCT	1 cut(s)	499
Alw26I	GTCTC	3 cut(s)	29, 225, 471
AlwI	GGATC	1 cut(s)	394
Ama87I	CYCGRG	1 cut(s)	481
Aor51HI	AGCGCT	1 cut(s)	154
AoxI	GGCC	3 cut(s)	13, 109, 354
ApeKI	GCWGC	1 cut(s)	45
AspLEI	GCGC	3 cut(s)	20, 155, 170
AspS9I	GGNCC	1 cut(s)	355
AsuC2I	CCSGG	1 cut(s)	404
AsuHPI	GGTGA	2 cut(s)	229, 292
AvaI	CYCGRG	1 cut(s)	481
AxyI	CCTNAGG	1 cut(s)	102
BanI	GGYRCC	1 cut(s)	134
BarI	GAAGNNNNNNTAC	2 cut(s)	320, 352
BbvCI	CCTCAGC	2 cut(s)	149, 164
BbvI	GCAGC	1 cut(s)	57
BccI	CCATC	3 cut(s)	152, 204, 245
BceAI	ACGGC	2 cut(s)	278, 371
BciT130I	CCWGG	3 cut(s)	251, 305, 317
BcnI	CCSGG	1 cut(s)	404
BcoDI	GTCTC	3 cut(s)	29, 225, 471
BfmI	CTRYAG	2 cut(s)	43, 94
BfoI	RGCGCY	2 cut(s)	156, 171
BisI	GCNGC	4 cut(s)	16, 46, 112, 133
BlsI	GCNGC	4 cut(s)	17, 47, 113, 134
Bme1390I	CCNGG	4 cut(s)	251, 305, 317, 404
BmeT110I	CYCGRG	1 cut(s)	481
BmgT120I	GGNCC	1 cut(s)	355
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	4 cut(s)	251, 305, 317, 404
BoxI	GACNNNNGTC	1 cut(s)	521
Bpu10I	CCTNAGC	2 cut(s)	149, 164
BpuEI	CTTGAG	2 cut(s)	41, 444
BpuMI	CCSGG	1 cut(s)	404
BsaHI	GRCGYC	2 cut(s)	180, 234
BsaI	GGTCTC	1 cut(s)	471
BsaJI	CCNNGG	4 cut(s)	303, 316, 369, 519
Bsc4I	CCNNNNNNNGG	4 cut(s)	107, 375, 393, 445
Bse21I	CCTNAGG	1 cut(s)	102
Bse3DI	GCAATG	1 cut(s)	427
BseBI	CCWGG	3 cut(s)	251, 305, 317
BseDI	CCNNGG	4 cut(s)	303, 316, 369, 519
BseGI	GGATG	3 cut(s)	66, 144, 415
BseLI	CCNNNNNNNGG	4 cut(s)	107, 375, 393, 445
BseMI	GCAATG	1 cut(s)	427
BseMII	CTCAG	3 cut(s)	116, 163, 178
BseRI	GAGGAG	3 cut(s)	21, 24, 47
BseXI	GCAGC	1 cut(s)	57
Bsh1236I	CGCG	3 cut(s)	18, 72, 114
BshFI	GGCC	3 cut(s)	15, 111, 356
BshNI	GGYRCC	1 cut(s)	134
BsiHKCI	CYCGRG	1 cut(s)	481
BsiSI	CCGG	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	276
BslI	CCNNNNNNNGG	4 cut(s)	107, 375, 393, 445
BsmAI	GTCTC	3 cut(s)	29, 225, 471
BsmBI	CGTCTC	1 cut(s)	225
BsmFI	GGGAC	1 cut(s)	276
BsnI	GGCC	3 cut(s)	15, 111, 356
Bso31I	GGTCTC	1 cut(s)	471
BsoBI	CYCGRG	1 cut(s)	481
Bsp143I	GATC	2 cut(s)	399, 526
Bsp19I	CCATGG	2 cut(s)	369, 519
BspACI	CCGC	6 cut(s)	16, 70, 112, 132, 160, 439
BspANI	GGCC	3 cut(s)	15, 111, 356
BspCNI	CTCAG	3 cut(s)	115, 162, 177
BspFNI	CGCG	3 cut(s)	18, 72, 114
BspLI	GGNNCC	1 cut(s)	136
BspMAI	CTGCAG	1 cut(s)	47
BspPI	GGATC	1 cut(s)	394
BspQI	GCTCTTC	1 cut(s)	506
BspT107I	GGYRCC	1 cut(s)	134
BspTNI	GGTCTC	1 cut(s)	471
BsrDI	GCAATG	1 cut(s)	427
BssECI	CCNNGG	4 cut(s)	303, 316, 369, 519
BssMI	GATC	2 cut(s)	399, 526
BssNI	GRCGYC	2 cut(s)	180, 234
BssT1I	CCWWGG	2 cut(s)	369, 519
Bst2UI	CCWGG	3 cut(s)	251, 305, 317
Bst4CI	ACNGT	1 cut(s)	26
Bst6I	CTCTTC	1 cut(s)	506
BstACI	GRCGYC	2 cut(s)	180, 234
BstC8I	GCNNGC	3 cut(s)	109, 310, 497
BstDEI	CTNAG	3 cut(s)	102, 149, 164
BstDSI	CCRYGG	2 cut(s)	369, 519
BstF5I	GGATG	3 cut(s)	66, 144, 415
BstFNI	CGCG	3 cut(s)	18, 72, 114
BstH2I	RGCGCY	2 cut(s)	156, 171
BstHHI	GCGC	3 cut(s)	20, 155, 170
BstKTI	GATC	2 cut(s)	402, 529
BstMAI	GTCTC	3 cut(s)	29, 225, 471
BstMBI	GATC	2 cut(s)	399, 526
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstNI	CCWGG	3 cut(s)	251, 305, 317
BstPAI	GACNNNNGTC	1 cut(s)	521
BstSCI	CCNGG	4 cut(s)	249, 303, 315, 402
BstSFI	CTRYAG	2 cut(s)	43, 94
BstUI	CGCG	3 cut(s)	18, 72, 114
BstV1I	GCAGC	1 cut(s)	57
BstXI	CCANNNNNNTGG	1 cut(s)	28
Bsu36I	CCTNAGG	1 cut(s)	102
BsuRI	GGCC	3 cut(s)	15, 111, 356
BtgI	CCRYGG	2 cut(s)	369, 519
BtsCI	GGATG	3 cut(s)	66, 144, 415
Cac8I	GCNNGC	3 cut(s)	109, 310, 497
CfoI	GCGC	3 cut(s)	20, 155, 170
Cfr13I	GGNCC	1 cut(s)	355
CseI	GACGC	2 cut(s)	169, 242
CsiI	ACCWGGT	1 cut(s)	249
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	6 cut(s)	49, 176, 370, 520, 530, 535
CviJI	RGCY	7 cut(s)	15, 55, 99, 107, 111, 356, 499
CviKI_1	RGCY	7 cut(s)	15, 55, 99, 107, 111, 356, 499
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	3 cut(s)	102, 149, 164
DpnI	GATC	2 cut(s)	401, 528
DpnII	GATC	2 cut(s)	399, 526
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	506
EarI	CTCTTC	1 cut(s)	506
EciI	GGCGGA	1 cut(s)	149
Eco130I	CCWWGG	2 cut(s)	369, 519
Eco31I	GGTCTC	1 cut(s)	471
Eco47III	AGCGCT	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	322
Eco81I	CCTNAGG	1 cut(s)	102
Eco88I	CYCGRG	1 cut(s)	481
EcoRII	CCWGG	3 cut(s)	249, 303, 315
EcoT14I	CCWWGG	2 cut(s)	369, 519
ErhI	CCWWGG	2 cut(s)	369, 519
Esp3I	CGTCTC	1 cut(s)	225
FaeI	CATG	6 cut(s)	52, 179, 373, 523, 533, 538
FaiI	YATR	7 cut(s)	50, 177, 189, 371, 521, 531, 536
FaqI	GGGAC	1 cut(s)	276
FatI	CATG	6 cut(s)	48, 175, 369, 519, 529, 534
Fnu4HI	GCNGC	4 cut(s)	16, 46, 112, 133
FokI	GGATG	3 cut(s)	53, 131, 422
Fsp4HI	GCNGC	4 cut(s)	16, 46, 112, 133
GlaI	GCGC	3 cut(s)	19, 154, 169
GluI	GCNGC	4 cut(s)	16, 46, 112, 133
HaeII	RGCGCY	2 cut(s)	156, 171
HaeIII	GGCC	3 cut(s)	15, 111, 356
HapII	CCGG	1 cut(s)	404
HgaI	GACGC	2 cut(s)	169, 242
HhaI	GCGC	3 cut(s)	20, 155, 170
Hin1I	GRCGYC	2 cut(s)	180, 234
Hin1II	CATG	6 cut(s)	52, 179, 373, 523, 533, 538
Hin6I	GCGC	3 cut(s)	18, 153, 168
HinP1I	GCGC	3 cut(s)	18, 153, 168
HincII	GTYRAC	2 cut(s)	127, 256
HindII	GTYRAC	2 cut(s)	127, 256
HinfI	GANTC	3 cut(s)	277, 321, 455
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	2 cut(s)	229, 292
Hpy166II	GTNNAC	3 cut(s)	127, 220, 256
Hpy188III	TCNNGA	4 cut(s)	274, 340, 430, 461
Hpy8I	GTNNAC	3 cut(s)	127, 220, 256
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	3 cut(s)	87, 346, 436
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	1 cut(s)	45
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpyF3I	CTNAG	3 cut(s)	102, 149, 164
HpySE526I	ACGT	1 cut(s)	192
Hsp92I	GRCGYC	2 cut(s)	180, 234
Hsp92II	CATG	6 cut(s)	52, 179, 373, 523, 533, 538
HspAI	GCGC	3 cut(s)	18, 153, 168
Kzo9I	GATC	2 cut(s)	399, 526
LguI	GCTCTTC	1 cut(s)	506
Lsp1109I	GCAGC	1 cut(s)	57
MabI	ACCWGGT	1 cut(s)	249
MaeII	ACGT	1 cut(s)	192
MalI	GATC	2 cut(s)	401, 528
MboI	GATC	2 cut(s)	399, 526
MboII	GAAGA	3 cut(s)	219, 493, 496
MseI	TTAA	1 cut(s)	363
MslI	CAYNNNNRTG	1 cut(s)	539
MspA1I	CMGCKG	1 cut(s)	132
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	4 cut(s)	251, 305, 317, 404
MvaI	CCWGG	3 cut(s)	251, 305, 317
MvnI	CGCG	3 cut(s)	18, 72, 114
MwoI	GCNNNNNNNGC	1 cut(s)	159
NciI	CCSGG	1 cut(s)	404
NcoI	CCATGG	2 cut(s)	369, 519
NdeII	GATC	2 cut(s)	399, 526
NlaIII	CATG	6 cut(s)	52, 179, 373, 523, 533, 538
NlaIV	GGNNCC	1 cut(s)	136
NmeAIII	GCCGAG	1 cut(s)	196
PciSI	GCTCTTC	1 cut(s)	506
PfeI	GAWTC	3 cut(s)	277, 321, 455
PflFI	GACNNNGTC	1 cut(s)	251
PfoI	TCCNGGA	1 cut(s)	402
PkrI	GCNGC	4 cut(s)	17, 47, 113, 134
PshAI	GACNNNNGTC	1 cut(s)	521
PsiI	TTATAA	1 cut(s)	189
Psp6I	CCWGG	3 cut(s)	249, 303, 315
PspGI	CCWGG	3 cut(s)	249, 303, 315
PspN4I	GGNNCC	1 cut(s)	136
PspPI	GGNCC	1 cut(s)	355
PstI	CTGCAG	1 cut(s)	47
PsyI	GACNNNGTC	1 cut(s)	251
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	539
SapI	GCTCTTC	1 cut(s)	506
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	4 cut(s)	16, 46, 112, 133
Sau3AI	GATC	2 cut(s)	399, 526
Sau96I	GGNCC	1 cut(s)	355
ScrFI	CCNGG	4 cut(s)	251, 305, 317, 404
SetI	ASST	5 cut(s)	195, 255, 270, 450, 501
SexAI	ACCWGGT	1 cut(s)	249
SfcI	CTRYAG	2 cut(s)	43, 94
SmiMI	CAYNNNNRTG	1 cut(s)	539
SmlI	CTYRAG	2 cut(s)	56, 459
SmoI	CTYRAG	2 cut(s)	56, 459
SsiI	CCGC	6 cut(s)	16, 70, 112, 132, 160, 439
StyD4I	CCNGG	4 cut(s)	249, 303, 315, 402
StyI	CCWWGG	2 cut(s)	369, 519
TaaI	ACNGT	1 cut(s)	26
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	2 cut(s)	324, 525
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	3 cut(s)	18, 114, 135
TfiI	GAWTC	3 cut(s)	277, 321, 455
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TseI	GCWGC	1 cut(s)	45
TspDTI	ATGAA	1 cut(s)	551
TspGWI	ACGGA	2 cut(s)	109, 243
Tth111I	GACNNNGTC	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.