FvH4_3g34581

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
29963606 .. 29964999
1394 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g34581.t1

Sequence Viewer

Length: 768 bp
ATGATCTCCAGCCTCCAGGCTGCAAGAGATGAGTACAGGATTTCATGTGGCACTTTGGAGGGCATGAACCGTGATTTGGTTTGGCGTTTTATGGATGTGCAGACACGTCTTATTACTCCAATTTGTCCACACTATGCAGAACATGTGTGGAGAAATATTCTGAAGAATGAAGGTTTTGTTGTAACAGCAGGATGGCCTGTGGCTGATGCTCCAGATATAACCCTCCAGAAAGCCAATAAGTACTTGCAAGAATCCATTGTTCCAATCAGAAAGCTTTTTCACAAAAGCTGTAAGAAGGTGGCAGATGATCATCACAGGAAACAGCTCAAAGGTTTGATTTATGTGAACAAACAATTCGATGGGTGGCAGGCAAAGTGCTTGACGATACTCAAGAGCAAATTTGATTCCAATAATCACAGTTTTTCTTCAGACACTGAAAAGGTGATACAGGAGGCATTGGCTACAATTTGTGTTGGTGAGCTAAAAGATTTGAAGGAAAAGATAAAAGATTGTATGCCTTTCATAAAGCTGAAGAAGAATGAGGCAGTTTCACATGGGGCTCAGGCATTGGAATTGAAGCTACCGTTTGAAGAGATTGAGTTCCTTCGACAAAACTTGGATTTGATTAAGAGACAAGTCGGTCTTGAAGAGATTCAAGTTTTGTCCTCCTCCAATCATGACGATAGAGCTCTAGCTGGTTCACATGCTGAACATATAGAGCAGAACCCTCCTGTCCCTGGAAGGCCAACTGCCATCTTCATTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0001101 GO:0003674 GO:0003824 GO:0004812 GO:0004819 GO:0004823 GO:0004832 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006425 GO:0006429 GO:0006438 GO:0006518 GO:0006520 GO:0006605 GO:0006622 GO:0006623 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007034 GO:0007041 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009267 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009719 GO:0009892 GO:0009894 GO:0009895 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010506 GO:0010507 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016070 GO:0016604 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0023051 GO:0023056 GO:0030054 GO:0030234 GO:0030695 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032006 GO:0032008 GO:0032535 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034198 GO:0034613 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042594 GO:0042886 GO:0043038 GO:0043039 GO:0043043 GO:0043085 GO:0043087 GO:0043170 GO:0043200 GO:0043201 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043547 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0055044 GO:0060589 GO:0061462 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071233 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090066 GO:0090304 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903432 GO:1904263 GO:1990253 GO:1990928
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

256

Amino Acids

29.1

Weight (kDa)

7.67

Isoelectric Point (pI)

50.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Anticodon_1 PF08264 25 - 92 3e-09 Anticodon-binding domain of tRNA ligase
RBD_LARS1 PF24810 115 - 194 4.1e-10 Leucine--tRNA ligase, RagD-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000598)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 639
AcsI RAATTY 1 cut(s) 398
AcuI CTGAAG 3 cut(s) 182, 411, 551
AfaI GTAC 2 cut(s) 35, 242
AfiI CCNNNNNNNGG 2 cut(s) 76, 737
AflIII ACRYGT 2 cut(s) 104, 142
AgsI TTSAA 5 cut(s) 493, 577, 590, 647, 656
AjiI CACGTC 1 cut(s) 107
AjnI CCWGG 2 cut(s) 15, 736
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 8 cut(s) 274, 288, 325, 481, 529, 580, 689, 695
AluI AGCT 8 cut(s) 274, 288, 325, 481, 529, 580, 689, 695
Alw21I GWGCWC 1 cut(s) 691
Alw26I GTCTC 1 cut(s) 625
AlwNI CAGNNNCTG 1 cut(s) 434
AoxI GGCC 2 cut(s) 194, 743
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 398
Asp700I GAANNNNTTC 1 cut(s) 651
AsuHPI GGTGA 2 cut(s) 454, 488
BanII GRGCYC 2 cut(s) 562, 691
Bbv12I GWGCWC 1 cut(s) 691
BbvI GCAGC 1 cut(s) 7
BccI CCATC 3 cut(s) 186, 353, 761
BciT130I CCWGG 2 cut(s) 17, 738
BclI TGATCA 1 cut(s) 307
BcoDI GTCTC 1 cut(s) 625
BfaI CTAG 1 cut(s) 692
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
BmcAI AGTACT 1 cut(s) 242
Bme1390I CCNGG 2 cut(s) 17, 738
BmgBI CACGTC 1 cut(s) 107
BmrFI CCNGG 2 cut(s) 17, 738
BmsI GCATC 1 cut(s) 196
BpmI CTGGAG 2 cut(s) 195, 209
Bpu10I CCTNAGC 1 cut(s) 561
BpuEI CTTGAG 1 cut(s) 374
BsaBI GATNNNNATC 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 736
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 737
Bse8I GATNNNNATC 1 cut(s) 309
BseBI CCWGG 2 cut(s) 17, 738
BseDI CCNNGG 1 cut(s) 736
BseGI GGATG 2 cut(s) 100, 197
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 2 cut(s) 76, 737
BseMII CTCAG 1 cut(s) 575
BseRI GAGGAG 1 cut(s) 658
BseXI GCAGC 1 cut(s) 7
BsgI GTGCAG 1 cut(s) 119
BshFI GGCC 2 cut(s) 196, 745
BsiHKAI GWGCWC 1 cut(s) 691
BslFI GGGAC 1 cut(s) 719
BslI CCNNNNNNNGG 2 cut(s) 76, 737
BsmAI GTCTC 1 cut(s) 625
BsmFI GGGAC 1 cut(s) 719
BsnI GGCC 2 cut(s) 196, 745
Bsp1286I GDGCHC 2 cut(s) 562, 691
Bsp143I GATC 2 cut(s) 3, 307
BspANI GGCC 2 cut(s) 196, 745
BspCNI CTCAG 1 cut(s) 574
BspHI TCATGA 1 cut(s) 676
BssECI CCNNGG 1 cut(s) 736
BssMI GATC 2 cut(s) 3, 307
Bst2UI CCWGG 2 cut(s) 17, 738
Bst4CI ACNGT 3 cut(s) 71, 419, 585
Bst6I CTCTTC 2 cut(s) 585, 642
BstC8I GCNNGC 1 cut(s) 369
BstDEI CTNAG 1 cut(s) 561
BstF5I GGATG 2 cut(s) 100, 197
BstKTI GATC 2 cut(s) 6, 310
BstMAI GTCTC 1 cut(s) 625
BstMBI GATC 2 cut(s) 3, 307
BstNI CCWGG 2 cut(s) 17, 738
BstNSI RCATGY 2 cut(s) 146, 707
BstSCI CCNGG 2 cut(s) 15, 736
BstV1I GCAGC 1 cut(s) 7
BsuRI GGCC 2 cut(s) 196, 745
BtrI CACGTC 1 cut(s) 107
BtsCI GGATG 2 cut(s) 100, 197
BtsIMutI CAGTG 1 cut(s) 432
Cac8I GCNNGC 1 cut(s) 369
CaiI CAGNNNCTG 1 cut(s) 434
CciI TCATGA 1 cut(s) 676
Csp6I GTAC 2 cut(s) 34, 241
CviAII CATG 6 cut(s) 45, 64, 143, 554, 677, 704
CviQI GTAC 2 cut(s) 34, 241
DdeI CTNAG 1 cut(s) 561
DpnI GATC 2 cut(s) 5, 309
DpnII GATC 2 cut(s) 3, 307
DrdI GACNNNNNNGTC 1 cut(s) 639
DseDI GACNNNNNNGTC 1 cut(s) 639
Eam1104I CTCTTC 2 cut(s) 585, 642
EarI CTCTTC 2 cut(s) 585, 642
Ecl136II GAGCTC 1 cut(s) 689
Eco24I GRGCYC 2 cut(s) 562, 691
Eco53kI GAGCTC 1 cut(s) 689
Eco57I CTGAAG 3 cut(s) 182, 411, 551
EcoICRI GAGCTC 1 cut(s) 689
EcoRII CCWGG 2 cut(s) 15, 736
EcoT38I GRGCYC 2 cut(s) 562, 691
FaeI CATG 6 cut(s) 48, 67, 146, 557, 680, 707
FalI AAGNNNNNCTT 2 cut(s) 627, 659
FaqI GGGAC 1 cut(s) 719
FatI CATG 6 cut(s) 44, 63, 142, 553, 676, 703
FbaI TGATCA 1 cut(s) 307
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 2 cut(s) 107, 204
FriOI GRGCYC 2 cut(s) 562, 691
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 1 cut(s) 692
GluI GCNGC 1 cut(s) 21
GsuI CTGGAG 2 cut(s) 195, 209
HaeIII GGCC 2 cut(s) 196, 745
Hin1II CATG 6 cut(s) 48, 67, 146, 557, 680, 707
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 3 cut(s) 251, 404, 652
HphI GGTGA 2 cut(s) 454, 488
Hpy166II GTNNAC 3 cut(s) 128, 346, 701
Hpy188I TCNGA 3 cut(s) 162, 269, 430
Hpy188III TCNNGA 5 cut(s) 212, 226, 391, 644, 677
Hpy8I GTNNAC 3 cut(s) 128, 346, 701
HpyAV CCTTC 5 cut(s) 164, 289, 487, 614, 735
HpyCH4III ACNGT 3 cut(s) 71, 419, 585
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 4 cut(s) 23, 100, 137, 247
HpyF3I CTNAG 1 cut(s) 561
HpySE526I ACGT 1 cut(s) 106
Hsp92II CATG 6 cut(s) 48, 67, 146, 557, 680, 707
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 2 cut(s) 3, 307
LmnI GCTCC 1 cut(s) 214
Lsp1109I GCAGC 1 cut(s) 7
LweI GCATC 1 cut(s) 196
MaeI CTAG 1 cut(s) 692
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 1 cut(s) 181
MalI GATC 2 cut(s) 5, 309
MboI GATC 2 cut(s) 3, 307
MboII GAAGA 7 cut(s) 175, 417, 544, 547, 602, 659, 748
MhlI GDGCHC 2 cut(s) 562, 691
MluCI AATT 5 cut(s) 120, 353, 398, 465, 572
MnlI CCTC 8 cut(s) 23, 52, 233, 445, 535, 676, 679, 738
MroXI GAANNNNTTC 1 cut(s) 651
MseI TTAA 1 cut(s) 627
MspR9I CCNGG 2 cut(s) 17, 738
MvaI CCWGG 2 cut(s) 17, 738
NdeII GATC 2 cut(s) 3, 307
NlaIII CATG 6 cut(s) 48, 67, 146, 557, 680, 707
NspI RCATGY 2 cut(s) 146, 707
PagI TCATGA 1 cut(s) 676
PciI ACATGT 1 cut(s) 142
PdmI GAANNNNTTC 1 cut(s) 651
PfeI GAWTC 3 cut(s) 251, 404, 652
PkrI GCNGC 1 cut(s) 22
PscI ACATGT 1 cut(s) 142
Psp124BI GAGCTC 1 cut(s) 691
Psp6I CCWGG 2 cut(s) 15, 736
PspGI CCWGG 2 cut(s) 15, 736
PstNI CAGNNNCTG 1 cut(s) 434
RsaI GTAC 2 cut(s) 35, 242
RsaNI GTAC 2 cut(s) 34, 241
SacI GAGCTC 1 cut(s) 691
SaqAI TTAA 1 cut(s) 627
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 2 cut(s) 3, 307
ScaI AGTACT 1 cut(s) 242
ScrFI CCNGG 2 cut(s) 17, 738
SduI GDGCHC 2 cut(s) 562, 691
SfaNI GCATC 1 cut(s) 196
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
Sse9I AATT 5 cut(s) 120, 353, 398, 465, 572
SspI AATATT 1 cut(s) 157
SspMI CTAG 1 cut(s) 692
SstI GAGCTC 1 cut(s) 691
StyD4I CCNGG 2 cut(s) 15, 736
TaaI ACNGT 3 cut(s) 71, 419, 585
TaiI ACGT 1 cut(s) 109
TaqI TCGA 2 cut(s) 357, 607
TaqII GACCGA 1 cut(s) 629
TasI AATT 5 cut(s) 120, 353, 398, 465, 572
TatI WGTACW 2 cut(s) 33, 240
TfiI GAWTC 3 cut(s) 251, 404, 652
Tru1I TTAA 1 cut(s) 627
Tru9I TTAA 1 cut(s) 627
TscAI CASTG 1 cut(s) 439
TseI GCWGC 1 cut(s) 20
TspDTI ATGAA 5 cut(s) 33, 80, 183, 511, 748
TspRI CASTG 1 cut(s) 439
XapI RAATTY 1 cut(s) 398
XceI RCATGY 2 cut(s) 146, 707
XmnI GAANNNNTTC 1 cut(s) 651
XspI CTAG 1 cut(s) 692
ZrmI AGTACT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.