Rmu_sc0007968.1_g000004

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007968.1
OG0000598
Physical Location & Seq
Forward (+)
13171 .. 21106
7936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007968.1_g000004.1.cds

Sequence Viewer

Length: 4821 bp
atgcagcttctgttaagagtagtgcaagattgttcgtggatttatagttacaaacagggagaaaaggtaatggcagtcgatggtgggaagaaatctaggagagatcgtctcaaagagattgaggagaaggcacaaaagttgtgggaagaaaatggtgttttcagggctgaatcttgtgaaaagccacctgaaccaggggagaagttctttgggaacttccctcttccttacatgaatggttttttgcatgtagggcatgcattctcactctcgaagctagagttttctgctcgttttcataggttaagaggtgctaatgtgctgctcccggttggtttccacctcactggcatgcccatcaaaagtattggcctgtctgccattgatatatcagaactccagaatccatcgaactggttgagctgcttccctcgagtttcagtgaaagagctcaaggcatttggcttgggctgtgactggaggcgctcctttattaccacagacatgaacccatactttgacaagtttgtgagatggcagatgaggaaactaaaatctatgggtaagattgtgaaggatgtccgttacacaatctactctcctttggatggccagccatgtgcagatcatgatagggaagctggtgaaggagttcggccccaagagtacaccatcatcaaaatggaggtggtggcaccttttcctcctaaactgggagtgttgaagggaaagaaagtcttccttgctgccgcaacattgagacctgagacttcttatggtcaaacaaatgcatgggtgttgcctgatggcaagtatggagcctttgaaatcaatgaaacagatgtcttcattcttacgcagagagcagcacttaatcttgcctatcagaagtactctagggttccagaaaagccttcttgcttggttgagatgactggctatgatttgattggccttccattgaagtctccacttgcactcaatcagatcgtttatgcccttcctatgttgaccgtcctaacagacaaaggtactgggatattgactagtgtacctagtgatgctcctgatgattatatggccttggaagatttaaaattgaaaccagcttttagagaaaaatatggtgtgaaggatgaatgggtcatgccctttgatatcattccaataatcaaaattccggaatatggagacaaggctgctaaaaaggttgtggaagatctcaaaatcaaaagtcagaatgagatagagaagctagcagaagccaagaggttgacatccttgaaaggtttacctgaaggaaaactgcttgtgggagaattcaaagaaaggatagtccaggaggcaaaaccattgataaggagcaggctaatagaggcaggtgatgcaatcatgtatagcgagcctgaaaagctggtagtttcacgatctggtgatgaatgtgttgttgctcttatagatcaatggtgcatcatgtacatatggggaagcagaatggaaaaaaactgctcaggatgggcttgttctcgatcttttggtcttggtacacgcattccctgggatgaagaatacttggtcgagccgttatccgattcaactctttacatggcttattacaccgttgctcacctgttacacaatggagacatgtatggcagctccaacagcacatctgcagtaagagctgaacaaatgaccgatgaggtttgggattttattttcttaaatgcaggctggcccgcggctgatgctccatatctaacactccagagtgcgaataagtatttgcaagactcaattgattcaataaggaagcagcatgataaacaactatcaacttcaaagaaaaccaatatgggtgcttcagctacttctttgacagaagcgttgatatatgttaaggagaaatatgacggatggaaagcagaatgcttaaaaatacttcaacatgacttaaatagagatactcttacttctgctcaagaggacagggagatatttgaggcattgaaggctagttcttttggtcaagatgatgattttagccaaaagaactgtatggaatttttgaagttcaagaaggagaaggcagttgcacttggagttcaggcattggacttgaagctacctttcggagagattgaagtccttgaacagaacttggacttgattaaaaaacaaatacatggtcttgaagaggtacgagtattgtcagctatcaacgctgctgatattgctagagctgatcctcatgctagactgctagagaagaatcctccctttcctggaagcccaattacggtatccaaaggtgataacattctcctagagattaagattctcctagagattgaagcagaggttcgagaatggtgggaagagaaaggcgtttttgtcaatgctgatcaatctcctgacaaccctcactatcctaacgatgaactgggggatgatcggaagaagtggtttgaaaactatctatttggtggtttatcgcgacgggcattcctgatatctaagctagagtgttgtgcagcttatcatagattaagagatgacaatgtgccatggcaaatcaaagcctcaggcgcagaggaacttccggagaagattataaatctgttggttggagaaccaccagtatttccaacagtaaagtggtttgaaaactatctgtttggtggtttatcgcgacgggcattcctgatatctaagctagagtgttgtgcagcttatcatagattaagagatgacaatgtgccatggcaaatcaaagcctcaggcgcagaggaacttccggagaagattataaatctgttggttggagaaccaccagtatttccaacagtttggagagctgcctattctactgatgccatgagactctccttagcttgttcttgtgatggtgatgattctccgagaattttatttaatactgcaaattctgctatccgaaagctcactaaagaaatgtcatggattagtgaacaactagcttatatggctgctgctgcagactcttcttcttttgtgagaagaattagaagagatggcccccccagtacttttgcggacaaggtgtttgcgaatgagataaatattgctgtgcataacagtgataactattaccgggcttgcatgtttcaagaagccctcatttctggctttcttcaacttcaggctgccagggactcgtatagaatttcatgtggtcctcatggcatgaaccatgatttggtgctgcgctatattgatgtgcatacccgtctaattgctccaatctgtccacactatgctgaatatgtctggcgggaatatttaaaaaaggaggggtttgtggtaattaagtcaggctggcctgccgctgatgccccggatttgatactccaaagtgccaataagtatttgcaagatctaattgaacttatgagggagcttgaaaagaagtttcgagctttaaatgatggtaattatgatgtgacagaagaagaaacgaaggcagtaggtttgatatatgttaaggaggaaattgatggatgggagggtaagtgcttgaggatacttcaagataactttgacagcgagacaaacaccttttctgctcaggacgaggacatgctagacgcattaatatcgtacatatatggggattttaccattcgtcaggatatagattataggcaaactgaacagctctgtatgtcttttctgaagttgaagaaggatgaagcacttaattttggggctgatgccttagagttgaagctaccatttggagagattgaggtcgttcaagaaaacttggacttgattaagagagaaattggccttcatgaggttaaggtacaagttttctctggtaccaccggtcttgaagattttacactggatagtcctccatcccctggaaggccagctgctgccttggtgagccgtgacttctatgagaaaatggaacgttctgctcctggagtatgggaactgaaacgtcgtcttcagttatcagataaagttcttactccctcgtctcgtcctccctctgagctattgtaccagaagaaaatggaacatccgtttaagttgttattccaggagaaaacggaacattctgaccttggagaacaggaaccgaataatgaacaatccccagataatattcttgctccattatatcatcctccctatgagctattgtttcagggctctttcaaaaaggccaaacgtactgcttctgccgaggacaaatggctcctcgtgaacttgcaatcgactaaggaattcagctcacatctggcgtatgatgattcaaatgaagtcaagaagatttgcagattctacaacttggtatatacacctgtagtgcttatcattgaccccataaatggtgagaatatgcgttcgtggtatggaatggttcaaccagaacgtctgctggaggcaagtgatctgttagtaccatttttggaaaatagccccaaggatcaccatcatccaggagaagaaagttctcagcctcagccagaggaaagtgaagtgggcattggaagcttccatgaaagcatgaaggtgactcaaccacaagttgaggaagtatatatctctgaagatgaagaggcaatcattagcatcgatgaggaggaagaaggaacagaaaggctactgaaagacaaagaaggaagcaggacagcaaggcgagactttttgagagagatggaggcaaaggctcaaaagttgtgggaagattatgaagttttcaatgctggatcttgcgcaaagcctcctgatccgggagaagttttgtggaaacttcatgcgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0001101 GO:0003674 GO:0003824 GO:0004812 GO:0004819 GO:0004823 GO:0004832 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006425 GO:0006429 GO:0006438 GO:0006518 GO:0006520 GO:0006605 GO:0006622 GO:0006623 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007034 GO:0007041 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009267 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009719 GO:0009892 GO:0009894 GO:0009895 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010506 GO:0010507 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016070 GO:0016604 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0023051 GO:0023056 GO:0030054 GO:0030234 GO:0030695 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032006 GO:0032008 GO:0032535 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034198 GO:0034613 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042594 GO:0042886 GO:0043038 GO:0043039 GO:0043043 GO:0043085 GO:0043087 GO:0043170 GO:0043200 GO:0043201 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043547 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0055044 GO:0060589 GO:0061462 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071233 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090066 GO:0090304 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903432 GO:1904263 GO:1990253 GO:1990928
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
Anticodon_1 tRNA-synt_1

Protein Analysis

1606

Amino Acids

182.6

Weight (kDa)

5.26

Isoelectric Point (pI)

51.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000598)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09620
fragaria_vesca FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_3g34581 FvH4_4g33720 FvH4_4g33720
malus_domestica MD08G1244600.v1.1 MD15G1439400.v1.1
prunus_persica Prupe.1G582000_v2.0.a1 Prupe.2G015100_v2.0.a1 Prupe.2G123100_v2.0.a1
pyrus_communis pycom08g21210 pycom08g21220 pycom15g38730
rosa_chinensis RchiOBHm_Chr1g0336121 RchiOBHm_Chr1g0353811 RchiOBHm_Chr1g0373331 RchiOBHm_Chr4g0443191 RchiOBHm_Chr4g0443201 RchiOBHm_Chr4g0443211
rosa_laevigata RLG00000003122 RLG00000005948 RLG00000026826 RLG00000028251 RLG00000028252 RLG00000028253 RLG00000029377
rosa_multiflora Rmu_co8002498.1_g000001 Rmu_co8262279.1_g000001 Rmu_co8314139.1_g000001 Rmu_co8393711.1_g000001 Rmu_co8419167.1_g000001 Rmu_sc0007968.1_g000004 Rmu_sc0018919.1_g000004 Rmu_sc0027447.1_g000001
rosa_roxburghii Rroxscaffold_4G00284260 Rroxscaffold_4G00301490 Rroxscaffold_4G00315860 Rroxscaffold_5G00383790 Rroxscaffold_5G00383800
rosa_rugosa Rorug01G0123100 Rorug01G0238700 Rorug01G0377100 Rorug01G0377100 Rorug01G0377200 Rorug01G0377300 Rorug04G0344700 Rorug05G0347900.1
rosa_samantha Rh1AG143800 Rh1AG250300 Rh1AG386300 Rh1BG113400 Rh1BG220800 Rh1BG220900 Rh1BG350400 Rh1CG135500 Rh1CG233100 Rh1CG363500 Rh1DG150200 Rh1DG247700 Rh1DG247800 Rh1DG381300 Rh4AG399400 Rh4AG399500 Rh4BG411000 Rh4BG411100 Rh4BG411200 Rh4CG426500 Rh4CG426600 Rh4DG406100 Rh4DG406200 Rh4DG406300
rosa_wichuraiana Rw0G015190 Rw1G021850 Rw1G034870 Rw4G034440 Rw4G034450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2615, 2810
AarI CACCTGC 1 cut(s) 1370
Acc16I TGCGCA 1 cut(s) 4774
Acc36I ACCTGC 1 cut(s) 1370
Acc65I GGTACC 1 cut(s) 3863
AccB1I GGYRCC 2 cut(s) 694, 3863
AccB7I CCANNNNNTGG 2 cut(s) 3238, 3908
AccII CGCG 3 cut(s) 1742, 2497, 2692
AccIII TCCGGA 3 cut(s) 1180, 2602, 2797
AciI CCGC 6 cut(s) 750, 1740, 1742, 3074, 3313, 3366
AclI AACGTT 1 cut(s) 3961
AclWI GGATC 4 cut(s) 2240, 4491, 4774, 4781
AcoI YGGCCR 1 cut(s) 610
AcsI RAATTY 7 cut(s) 1176, 1319, 2063, 2925, 2944, 3204, 4280
AcuI CTGAAG 6 cut(s) 1317, 1848, 3164, 3734, 3983, 4626
AflIII ACRYGT 1 cut(s) 1647
AgeI ACCGGT 1 cut(s) 3869
AhlI ACTAGT 1 cut(s) 1046
AjnI CCWGG 9 cut(s) 193, 1338, 1556, 2284, 3188, 3907, 3970, 4092, 4495
AjuI GAANNNNNNNTTGG 4 cut(s) 3221, 3253, 4527, 4559
Alw21I GWGCWC 1 cut(s) 453
AlwI GGATC 4 cut(s) 2240, 4491, 4774, 4781
AlwNI CAGNNNCTG 2 cut(s) 10, 3923
Ama87I CYCGRG 1 cut(s) 432
Aor13HI TCCGGA 3 cut(s) 1180, 2602, 2797
ApoI RAATTY 7 cut(s) 1176, 1319, 2063, 2925, 2944, 3204, 4280
ArsI GACNNNNNNTTYG 4 cut(s) 2173, 2205, 3068, 3100
AseI ATTAAT 1 cut(s) 3632
AsiGI ACCGGT 1 cut(s) 3869
Asp700I GAANNNNTTC 2 cut(s) 651, 737
Asp718I GGTACC 1 cut(s) 3863
AspLEI GCGC 5 cut(s) 486, 2591, 2786, 3249, 4775
AspS9I GGNCC 4 cut(s) 657, 1737, 3056, 3215
AsuC2I CCSGG 4 cut(s) 329, 3134, 3377, 4791
AsuNHI GCTAGC 1 cut(s) 1255
AvaI CYCGRG 1 cut(s) 432
AvaII GGWCC 1 cut(s) 3215
AxyI CCTNAGG 2 cut(s) 2584, 2779
BaeI ACNNNNGTAYC 2 cut(s) 1035, 1068
BalI TGGCCA 1 cut(s) 612
BanI GGYRCC 2 cut(s) 694, 3863
BanII GRGCYC 2 cut(s) 453, 4208
BarI GAAGNNNNNNTAC 2 cut(s) 2281, 2313
BauI CACGAG 1 cut(s) 4256
BbsI GAAGAC 3 cut(s) 730, 838, 3989
Bbv12I GWGCWC 1 cut(s) 453
BbvCI CCTCAGC 1 cut(s) 4518
BceAI ACGGC 2 cut(s) 1567, 3921
BcgI CGANNNNNNTGC 2 cut(s) 3618, 3652
BciT130I CCWGG 9 cut(s) 195, 1340, 1558, 2286, 3190, 3909, 3972, 4094, 4497
BciVI GTATCC 2 cut(s) 2314, 3555
BclI TGATCA 1 cut(s) 2404
BcnI CCSGG 4 cut(s) 329, 3134, 3377, 4791
BcuI ACTAGT 1 cut(s) 1046
BfmI CTRYAG 3 cut(s) 1674, 3015, 4359
BfoI RGCGCY 1 cut(s) 487
BfuAI ACCTGC 1 cut(s) 1370
BfuI GTATCC 2 cut(s) 2314, 3555
BglII AGATCT 2 cut(s) 1219, 3415
BmcAI AGTACT 2 cut(s) 893, 3067
Bme18I GGWCC 1 cut(s) 3215
BmeT110I CYCGRG 1 cut(s) 432
BmgT120I GGNCC 4 cut(s) 657, 1737, 3056, 3215
BmiI GGNNCC 8 cut(s) 659, 696, 820, 903, 3058, 3865, 4131, 4253
BmrI ACTGGG 4 cut(s) 722, 1044, 2453, 3057
BmsI GCATC 8 cut(s) 1051, 1375, 1479, 1738, 2863, 3361, 3742, 4638
BmtI GCTAGC 1 cut(s) 1259
BmuI ACTGGG 4 cut(s) 722, 1044, 2453, 3057
BpiI GAAGAC 3 cut(s) 730, 838, 3989
BplI GAGNNNNNCTC 2 cut(s) 93, 125
BpmI CTGGAG 5 cut(s) 383, 499, 1751, 3993, 4457
Bpu10I CCTNAGC 4 cut(s) 1510, 2890, 3606, 4518
BpuEI CTTGAG 3 cut(s) 437, 1965, 3577
BpuMI CCSGG 4 cut(s) 329, 3134, 3377, 4791
Bsa29I ATCGAT 1 cut(s) 4632
BsaBI GATNNNNATC 1 cut(s) 4488
BsaI GGTCTC 1 cut(s) 754
BsaWI WCCGGW 4 cut(s) 1180, 2602, 2797, 3869
BsaXI ACNNNNNCTCC 6 cut(s) 51, 81, 91, 121, 3536, 3566
Bse118I RCCGGY 1 cut(s) 3869
Bse21I CCTNAGG 2 cut(s) 2584, 2779
Bse8I GATNNNNATC 1 cut(s) 4488
BseAI TCCGGA 3 cut(s) 1180, 2602, 2797
BseBI CCWGG 9 cut(s) 195, 1340, 1558, 2286, 3190, 3909, 3972, 4094, 4497
BseCI ATCGAT 1 cut(s) 4632
BseJI GATNNNNATC 1 cut(s) 4488
BseMII CTCAG 8 cut(s) 756, 1524, 2598, 2793, 3620, 4035, 4526, 4532
BseRI GAGGAG 3 cut(s) 137, 4244, 4652
BsgI GTGCAG 3 cut(s) 642, 2553, 2748
Bsh1236I CGCG 3 cut(s) 1742, 2497, 2692
BshNI GGYRCC 2 cut(s) 694, 3863
BshTI ACCGGT 1 cut(s) 3869
BshVI ATCGAT 1 cut(s) 4632
BsiHKAI GWGCWC 1 cut(s) 453
BsiHKCI CYCGRG 1 cut(s) 432
BsiSI CCGG 8 cut(s) 329, 1181, 2603, 2798, 3133, 3377, 3870, 4790
BslFI GGGAC 1 cut(s) 3206
BsmBI CGTCTC 2 cut(s) 113, 4035
BsmFI GGGAC 1 cut(s) 3206
BsmI GAATGC 5 cut(s) 260, 1551, 1934, 2504, 2699
Bso31I GGTCTC 1 cut(s) 754
BsoBI CYCGRG 1 cut(s) 432
Bsp1286I GDGCHC 2 cut(s) 453, 4208
Bsp13I TCCGGA 3 cut(s) 1180, 2602, 2797
Bsp1407I TGTACA 1 cut(s) 1476
Bsp19I CCATGG 2 cut(s) 2567, 2762
Bsp68I TCGCGA 2 cut(s) 2497, 2692
BspACI CCGC 6 cut(s) 750, 1740, 1742, 3074, 3313, 3366
BspCNI CTCAG 8 cut(s) 757, 1523, 2597, 2792, 3619, 4036, 4525, 4531
BspDI ATCGAT 1 cut(s) 4632
BspEI TCCGGA 3 cut(s) 1180, 2602, 2797
BspFNI CGCG 3 cut(s) 1742, 2497, 2692
BspHI TCATGA 2 cut(s) 628, 3835
BspLI GGNNCC 8 cut(s) 659, 696, 820, 903, 3058, 3865, 4131, 4253
BspMAI CTGCAG 2 cut(s) 1678, 3019
BspMI ACCTGC 1 cut(s) 1370
BspOI GCTAGC 1 cut(s) 1259
BspPI GGATC 4 cut(s) 2240, 4491, 4774, 4781
BspT107I GGYRCC 2 cut(s) 694, 3863
BspTNI GGTCTC 1 cut(s) 754
BsrFI RCCGGY 1 cut(s) 3869
BsrGI TGTACA 1 cut(s) 1476
BssAI RCCGGY 1 cut(s) 3869
BssSI CACGAG 1 cut(s) 4256
BssT1I CCWWGG 6 cut(s) 1083, 2567, 2762, 3927, 4117, 4479
Bst2BI CACGAG 1 cut(s) 4256
Bst2UI CCWGG 9 cut(s) 195, 1340, 1558, 2286, 3190, 3909, 3972, 4094, 4497
Bst4CI ACNGT 7 cut(s) 1015, 1621, 2057, 2302, 2653, 2848, 3119
Bst6I CTCTTC 6 cut(s) 228, 2190, 2373, 3028, 3043, 4608
BstAPI GCANNNNNTGC 2 cut(s) 1385, 2948
BstAUI TGTACA 1 cut(s) 1476
BstDSI CCRYGG 3 cut(s) 1740, 2567, 2762
BstENI CCTNNNNNAGG 2 cut(s) 192, 3836
BstFNI CGCG 3 cut(s) 1742, 2497, 2692
BstH2I RGCGCY 1 cut(s) 487
BstHHI GCGC 5 cut(s) 486, 2591, 2786, 3249, 4775
BstNI CCWGG 9 cut(s) 195, 1340, 1558, 2286, 3190, 3909, 3972, 4094, 4497
BstNSI RCATGY 6 cut(s) 251, 260, 355, 1651, 3145, 3622
BstSFI CTRYAG 3 cut(s) 1674, 3015, 4359
BstUI CGCG 3 cut(s) 1742, 2497, 2692
BstV2I GAAGAC 3 cut(s) 730, 838, 3989
BstX2I RGATCY 3 cut(s) 1219, 3415, 4766
BstXI CCANNNNNNTGG 3 cut(s) 347, 414, 2850
BstYI RGATCY 3 cut(s) 1219, 3415, 4766
Bsu15I ATCGAT 1 cut(s) 4632
Bsu36I CCTNAGG 2 cut(s) 2584, 2779
BsuI GTATCC 2 cut(s) 2314, 3555
BsuTUI ATCGAT 1 cut(s) 4632
BtgI CCRYGG 3 cut(s) 1740, 2567, 2762
BtsIMutI CAGTG 4 cut(s) 345, 447, 3124, 3887
BtuMI TCGCGA 2 cut(s) 2497, 2692
BveI ACCTGC 1 cut(s) 1370
CaiI CAGNNNCTG 2 cut(s) 10, 3923
CciI TCATGA 2 cut(s) 628, 3835
CfoI GCGC 5 cut(s) 486, 2591, 2786, 3249, 4775
Cfr10I RCCGGY 1 cut(s) 3869
Cfr13I GGNCC 4 cut(s) 657, 1737, 3056, 3215
Cfr42I CCGCGG 1 cut(s) 1743
ClaI ATCGAT 1 cut(s) 4632
CseI GACGC 1 cut(s) 3635
CspAI ACCGGT 1 cut(s) 3869
CspCI CAANNNNNGTGG 6 cut(s) 122, 157, 3856, 3891, 4718, 4753
DraI TTTAAA 3 cut(s) 1095, 3324, 3462
EaeI YGGCCR 1 cut(s) 610
Eam1104I CTCTTC 6 cut(s) 228, 2190, 2373, 3028, 3043, 4608
EarI CTCTTC 6 cut(s) 228, 2190, 2373, 3028, 3043, 4608
Ecl136II GAGCTC 1 cut(s) 451
Eco130I CCWWGG 6 cut(s) 1083, 2567, 2762, 3927, 4117, 4479
Eco24I GRGCYC 2 cut(s) 453, 4208
Eco31I GGTCTC 1 cut(s) 754
Eco32I GATATC 3 cut(s) 1159, 2514, 2709
Eco47I GGWCC 1 cut(s) 3215
Eco53kI GAGCTC 1 cut(s) 451
Eco57I CTGAAG 6 cut(s) 1317, 1848, 3164, 3734, 3983, 4626
Eco81I CCTNAGG 2 cut(s) 2584, 2779
Eco88I CYCGRG 1 cut(s) 432
EcoICRI GAGCTC 1 cut(s) 451
EcoNI CCTNNNNNAGG 2 cut(s) 192, 3836
EcoRI GAATTC 2 cut(s) 1319, 4280
EcoRII CCWGG 9 cut(s) 193, 1338, 1556, 2284, 3188, 3907, 3970, 4092, 4495
EcoRV GATATC 3 cut(s) 1159, 2514, 2709
EcoT14I CCWWGG 6 cut(s) 1083, 2567, 2762, 3927, 4117, 4479
EcoT22I ATGCAT 2 cut(s) 262, 793
EcoT38I GRGCYC 2 cut(s) 453, 4208
ErhI CCWWGG 6 cut(s) 1083, 2567, 2762, 3927, 4117, 4479
Esp3I CGTCTC 2 cut(s) 113, 4035
FalI AAGNNNNNCTT 4 cut(s) 722, 754, 726, 758
FaqI GGGAC 1 cut(s) 3206
FauI CCCGC 2 cut(s) 1747, 3306
FauNDI CATATG 1 cut(s) 1481
FbaI TGATCA 1 cut(s) 2404
FriOI GRGCYC 2 cut(s) 453, 4208
FspI TGCGCA 1 cut(s) 4774
GlaI GCGC 5 cut(s) 485, 2590, 2785, 3248, 4774
GsuI CTGGAG 5 cut(s) 383, 499, 1751, 3993, 4457
HaeII RGCGCY 1 cut(s) 487
HapII CCGG 8 cut(s) 329, 1181, 2603, 2798, 3133, 3377, 3870, 4790
HgaI GACGC 1 cut(s) 3635
HhaI GCGC 5 cut(s) 486, 2591, 2786, 3249, 4775
Hin6I GCGC 5 cut(s) 484, 2589, 2784, 3247, 4773
HinP1I GCGC 5 cut(s) 484, 2589, 2784, 3247, 4773
HincII GTYRAC 2 cut(s) 1011, 1275
HindII GTYRAC 2 cut(s) 1011, 1275
HindIII AAGCTT 1 cut(s) 4549
HpaII CCGG 8 cut(s) 329, 1181, 2603, 2798, 3133, 3377, 3870, 4790
Hpy166II GTNNAC 9 cut(s) 669, 1011, 1052, 1275, 1292, 1547, 2990, 3290, 4261
Hpy8I GTNNAC 9 cut(s) 669, 1011, 1052, 1275, 1292, 1547, 2990, 3290, 4261
Hpy99I CGWCG 3 cut(s) 2502, 2697, 3996
HpyCH4III ACNGT 7 cut(s) 1015, 1621, 2057, 2302, 2653, 2848, 3119
HpyCH4IV ACGT 4 cut(s) 3961, 3991, 4225, 4429
HpySE526I ACGT 4 cut(s) 3961, 3991, 4225, 4429
HspAI GCGC 5 cut(s) 484, 2589, 2784, 3247, 4773
Kpn2I TCCGGA 3 cut(s) 1180, 2602, 2797
KpnI GGTACC 1 cut(s) 3867
Ksp22I TGATCA 1 cut(s) 2404
KspI CCGCGG 1 cut(s) 1743
LweI GCATC 8 cut(s) 1051, 1375, 1479, 1738, 2863, 3361, 3742, 4638
MaeII ACGT 4 cut(s) 3961, 3991, 4225, 4429
MaeIII GTNAC 7 cut(s) 47, 473, 584, 1632, 3481, 3938, 4570
MfeI CAATTG 1 cut(s) 1797
MflI RGATCY 3 cut(s) 1219, 3415, 4766
MhlI GDGCHC 2 cut(s) 453, 4208
MlsI TGGCCA 1 cut(s) 612
MluNI TGGCCA 1 cut(s) 612
MlyI GAGTC 5 cut(s) 1787, 2877, 3014, 3188, 4567
MmeI TCCRAC 5 cut(s) 1686, 2608, 2672, 2803, 2867
Mox20I TGGCCA 1 cut(s) 612
Mph1103I ATGCAT 2 cut(s) 262, 793
MroI TCCGGA 3 cut(s) 1180, 2602, 2797
MroXI GAANNNNTTC 2 cut(s) 651, 737
MscI TGGCCA 1 cut(s) 612
MslI CAYNNNNRTG 5 cut(s) 350, 503, 680, 3117, 4568
Msp20I TGGCCA 1 cut(s) 612
MspA1I CMGCKG 3 cut(s) 1742, 3368, 3920
MspI CCGG 8 cut(s) 329, 1181, 2603, 2798, 3133, 3377, 3870, 4790
MunI CAATTG 1 cut(s) 1797
Mva1269I GAATGC 5 cut(s) 260, 1551, 1934, 2504, 2699
MvaI CCWGG 9 cut(s) 195, 1340, 1558, 2286, 3190, 3909, 3972, 4094, 4497
MvnI CGCG 3 cut(s) 1742, 2497, 2692
NciI CCSGG 4 cut(s) 329, 3134, 3377, 4791
NcoI CCATGG 2 cut(s) 2567, 2762
NdeI CATATG 1 cut(s) 1481
NheI GCTAGC 1 cut(s) 1255
NlaIV GGNNCC 8 cut(s) 659, 696, 820, 903, 3058, 3865, 4131, 4253
NmeAIII GCCGAG 1 cut(s) 4264
NmuCI GTSAC 4 cut(s) 473, 3481, 3938, 4570
NruI TCGCGA 2 cut(s) 2497, 2692
NsbI TGCGCA 1 cut(s) 4774
NsiI ATGCAT 2 cut(s) 262, 793
NspI RCATGY 6 cut(s) 251, 260, 355, 1651, 3145, 3622
PaeI GCATGC 2 cut(s) 260, 355
PaeR7I CTCGAG 1 cut(s) 432
PagI TCATGA 2 cut(s) 628, 3835
PaqCI CACCTGC 1 cut(s) 1370
PasI CCCWGGG 1 cut(s) 1557
PciI ACATGT 1 cut(s) 1647
PctI GAATGC 5 cut(s) 260, 1551, 1934, 2504, 2699
PdmI GAANNNNTTC 2 cut(s) 651, 737
PfeI GAWTC 9 cut(s) 170, 403, 1592, 1802, 2272, 2338, 2915, 4307, 4335
PflMI CCANNNNNTGG 2 cut(s) 3238, 3908
PfoI TCCNGGA 6 cut(s) 1338, 2284, 3970, 4092, 4495, 4789
PinAI ACCGGT 1 cut(s) 3869
PleI GAGTC 5 cut(s) 1787, 2877, 3014, 3188, 4567
PpsI GAGTC 5 cut(s) 1787, 2877, 3014, 3188, 4567
PscI ACATGT 1 cut(s) 1647
PshBI ATTAAT 1 cut(s) 3632
PsiI TTATAA 2 cut(s) 2615, 2810
Psp124BI GAGCTC 1 cut(s) 453
Psp1406I AACGTT 1 cut(s) 3961
Psp6I CCWGG 9 cut(s) 193, 1338, 1556, 2284, 3188, 3907, 3970, 4092, 4495
PspGI CCWGG 9 cut(s) 193, 1338, 1556, 2284, 3188, 3907, 3970, 4092, 4495
PspN4I GGNNCC 8 cut(s) 659, 696, 820, 903, 3058, 3865, 4131, 4253
PspPI GGNCC 4 cut(s) 657, 1737, 3056, 3215
PspXI VCTCGAGB 1 cut(s) 432
PstI CTGCAG 2 cut(s) 1678, 3019
PstNI CAGNNNCTG 2 cut(s) 10, 3923
PsuI RGATCY 3 cut(s) 1219, 3415, 4766
PvuII CAGCTG 1 cut(s) 3920
RruI TCGCGA 2 cut(s) 2497, 2692
RseI CAYNNNNRTG 5 cut(s) 350, 503, 680, 3117, 4568
SacI GAGCTC 1 cut(s) 453
SacII CCGCGG 1 cut(s) 1743
Sau96I GGNCC 4 cut(s) 657, 1737, 3056, 3215
ScaI AGTACT 2 cut(s) 893, 3067
SchI GAGTC 5 cut(s) 1787, 2877, 3014, 3188, 4567
SduI GDGCHC 2 cut(s) 453, 4208
SfaNI GCATC 8 cut(s) 1051, 1375, 1479, 1738, 2863, 3361, 3742, 4638
SfcI CTRYAG 3 cut(s) 1674, 3015, 4359
Sfr274I CTCGAG 1 cut(s) 432
Sfr303I CCGCGG 1 cut(s) 1743
SgrBI CCGCGG 1 cut(s) 1743
SinI GGWCC 1 cut(s) 3215
SlaI CTCGAG 1 cut(s) 432
SmiMI CAYNNNNRTG 5 cut(s) 350, 503, 680, 3117, 4568
SmlI CTYRAG 4 cut(s) 432, 452, 1980, 3556
SmoI CTYRAG 4 cut(s) 432, 452, 1980, 3556
SpeI ACTAGT 1 cut(s) 1046
SphI GCATGC 2 cut(s) 260, 355
SsiI CCGC 6 cut(s) 750, 1740, 1742, 3074, 3313, 3366
SspI AATATT 3 cut(s) 3103, 3320, 4159
SstI GAGCTC 1 cut(s) 453
StyI CCWWGG 6 cut(s) 1083, 2567, 2762, 3927, 4117, 4479
TaaI ACNGT 7 cut(s) 1015, 1621, 2057, 2302, 2653, 2848, 3119
TaiI ACGT 4 cut(s) 3964, 3994, 4228, 4432
TaqII GACCGA 1 cut(s) 1712
TatI WGTACW 4 cut(s) 666, 891, 1476, 3065
TauI GCSGC 3 cut(s) 752, 1745, 3368
TfiI GAWTC 9 cut(s) 170, 403, 1592, 1802, 2272, 2338, 2915, 4307, 4335
TscAI CASTG 4 cut(s) 352, 447, 3124, 3894
TseFI GTSAC 4 cut(s) 473, 3481, 3938, 4570
Tsp45I GTSAC 4 cut(s) 473, 3481, 3938, 4570
TspGWI ACGGA 4 cut(s) 572, 1929, 4065, 4118
TspRI CASTG 4 cut(s) 352, 447, 3124, 3894
Van91I CCANNNNNTGG 2 cut(s) 3238, 3908
VpaK11BI GGWCC 1 cut(s) 3215
VspI ATTAAT 1 cut(s) 3632
XagI CCTNNNNNAGG 2 cut(s) 192, 3836
XapI RAATTY 7 cut(s) 1176, 1319, 2063, 2925, 2944, 3204, 4280
XceI RCATGY 6 cut(s) 251, 260, 355, 1651, 3145, 3622
XcmI CCANNNNNNNNNTGG 2 cut(s) 679, 2655
XhoI CTCGAG 1 cut(s) 432
XmnI GAANNNNTTC 2 cut(s) 651, 737
ZrmI AGTACT 2 cut(s) 893, 3067
Zsp2I ATGCAT 2 cut(s) 262, 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.