Rmu_sc0027447.1_g000001

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0027447.1
OG0000598
Physical Location & Seq
Reverse (-)
1 .. 1119
1119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0027447.1_g000001.1.cds

Sequence Viewer

Length: 608 bp
atggtatcctttgcagtaaatgcaggctggcccgcggctgatgctccatatctaacactccagagtgcgaataagtatttgcaagactcaattgattcaataaggaagcagcatgataaacaactatcaacttcaaagaaaaccaatatgggtgcttcagctacttctttgacagaagcgttgatatatgttaaggagaaatatgacggatggaaagcagaatgcttaaaaatacttcaacatgacttaaatagagatactcttacttctgctcaagaggacagggagatatttgaggcattgaaggctagtccttttggtcaagatgatgattttagccaaaagaactgtatggaatttttgaagttcaagaaggagaaggcagttgcacttggagttcaggcattggacttgaagctacctttcggagagattgaagtccttgaacagaacttggacttgattaaaaaacaaatacatggtcttgaagaggtacgagtattgtcagctatcaacgctgctgatattgctagagctgatcctcatgctagactgctagagaagaatcctccctttcctggaagcccaattacggttttcttgacccg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0001101 GO:0003674 GO:0003824 GO:0004812 GO:0004819 GO:0004823 GO:0004832 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006425 GO:0006429 GO:0006438 GO:0006518 GO:0006520 GO:0006605 GO:0006622 GO:0006623 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007034 GO:0007041 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009267 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009719 GO:0009892 GO:0009894 GO:0009895 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010506 GO:0010507 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016070 GO:0016604 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0023051 GO:0023056 GO:0030054 GO:0030234 GO:0030695 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032006 GO:0032008 GO:0032535 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034198 GO:0034613 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042594 GO:0042886 GO:0043038 GO:0043039 GO:0043043 GO:0043085 GO:0043087 GO:0043170 GO:0043200 GO:0043201 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043547 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0055044 GO:0060589 GO:0061462 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071233 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090066 GO:0090304 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903432 GO:1904263 GO:1990253 GO:1990928
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
Anticodon_1 tRNA-synt_1

Protein Analysis

203

Amino Acids

22.69

Weight (kDa)

5.85

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000598)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09620
fragaria_vesca FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_3g34581 FvH4_4g33720 FvH4_4g33720
malus_domestica MD08G1244600.v1.1 MD15G1439400.v1.1
prunus_persica Prupe.1G582000_v2.0.a1 Prupe.2G015100_v2.0.a1 Prupe.2G123100_v2.0.a1
pyrus_communis pycom08g21210 pycom08g21220 pycom15g38730
rosa_chinensis RchiOBHm_Chr1g0336121 RchiOBHm_Chr1g0353811 RchiOBHm_Chr1g0373331 RchiOBHm_Chr4g0443191 RchiOBHm_Chr4g0443201 RchiOBHm_Chr4g0443211
rosa_laevigata RLG00000003122 RLG00000005948 RLG00000026826 RLG00000028251 RLG00000028252 RLG00000028253 RLG00000029377
rosa_multiflora Rmu_co8002498.1_g000001 Rmu_co8262279.1_g000001 Rmu_co8314139.1_g000001 Rmu_co8393711.1_g000001 Rmu_co8419167.1_g000001 Rmu_sc0007968.1_g000004 Rmu_sc0018919.1_g000004 Rmu_sc0027447.1_g000001
rosa_roxburghii Rroxscaffold_4G00284260 Rroxscaffold_4G00301490 Rroxscaffold_4G00315860 Rroxscaffold_5G00383790 Rroxscaffold_5G00383800
rosa_rugosa Rorug01G0123100 Rorug01G0238700 Rorug01G0377100 Rorug01G0377100 Rorug01G0377200 Rorug01G0377300 Rorug04G0344700 Rorug05G0347900.1
rosa_samantha Rh1AG143800 Rh1AG250300 Rh1AG386300 Rh1BG113400 Rh1BG220800 Rh1BG220900 Rh1BG350400 Rh1CG135500 Rh1CG233100 Rh1CG363500 Rh1DG150200 Rh1DG247700 Rh1DG247800 Rh1DG381300 Rh4AG399400 Rh4AG399500 Rh4BG411000 Rh4BG411100 Rh4BG411200 Rh4CG426500 Rh4CG426600 Rh4DG406100 Rh4DG406200 Rh4DG406300
rosa_wichuraiana Rw0G015190 Rw1G021850 Rw1G034870 Rw4G034440 Rw4G034450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 35
AciI CCGC 2 cut(s) 33, 35
AclWI GGATC 1 cut(s) 533
AcsI RAATTY 1 cut(s) 356
AcuI CTGAAG 1 cut(s) 141
AfaI GTAC 1 cut(s) 495
AfiI CCNNNNNNNGG 2 cut(s) 578, 592
AjnI CCWGG 1 cut(s) 577
AluBI AGCT 4 cut(s) 161, 418, 509, 536
AluI AGCT 4 cut(s) 161, 418, 509, 536
AlwI GGATC 1 cut(s) 533
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 2 cut(s) 109, 518
ApoI RAATTY 1 cut(s) 356
ArsI GACNNNNNNTTYG 2 cut(s) 466, 498
AspS9I GGNCC 1 cut(s) 30
BarI GAAGNNNNNNTAC 2 cut(s) 574, 606
BbvI GCAGC 2 cut(s) 121, 505
BccI CCATC 1 cut(s) 204
BciT130I CCWGG 1 cut(s) 579
BciVI GTATCC 1 cut(s) 16
BfaI CTAG 4 cut(s) 309, 531, 549, 557
BfuI GTATCC 1 cut(s) 16
BisI GCNGC 3 cut(s) 36, 110, 519
BlsI GCNGC 3 cut(s) 37, 111, 520
Bme1390I CCNGG 1 cut(s) 579
BmgT120I GGNCC 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 579
BmsI GCATC 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 33
Bsc4I CCNNNNNNNGG 2 cut(s) 578, 592
BseBI CCWGG 1 cut(s) 579
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 1 cut(s) 215
BseLI CCNNNNNNNGG 2 cut(s) 578, 592
BseXI GCAGC 2 cut(s) 121, 505
Bsh1236I CGCG 1 cut(s) 35
BshFI GGCC 1 cut(s) 31
BslI CCNNNNNNNGG 2 cut(s) 578, 592
BsmI GAATGC 1 cut(s) 227
BsnI GGCC 1 cut(s) 31
Bsp143I GATC 1 cut(s) 538
BspACI CCGC 2 cut(s) 33, 35
BspANI GGCC 1 cut(s) 31
BspFNI CGCG 1 cut(s) 35
BspPI GGATC 1 cut(s) 533
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 1 cut(s) 538
Bst2UI CCWGG 1 cut(s) 579
Bst4CI ACNGT 2 cut(s) 350, 595
Bst6I CTCTTC 1 cut(s) 483
BstAPI GCANNNNNTGC 1 cut(s) 20
BstC8I GCNNGC 3 cut(s) 25, 29, 33
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 1 cut(s) 215
BstFNI CGCG 1 cut(s) 35
BstKTI GATC 1 cut(s) 541
BstMBI GATC 1 cut(s) 538
BstMWI GCNNNNNNNGC 5 cut(s) 20, 41, 305, 515, 527
BstNI CCWGG 1 cut(s) 579
BstSCI CCNGG 1 cut(s) 577
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 2 cut(s) 121, 505
BsuI GTATCC 1 cut(s) 16
BsuRI GGCC 1 cut(s) 31
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 1 cut(s) 215
Cac8I GCNNGC 3 cut(s) 25, 29, 33
Cfr13I GGNCC 1 cut(s) 30
Cfr42I CCGCGG 1 cut(s) 36
Csp6I GTAC 1 cut(s) 494
CviAII CATG 4 cut(s) 113, 242, 479, 545
CviQI GTAC 1 cut(s) 494
DpnI GATC 1 cut(s) 540
DpnII GATC 1 cut(s) 538
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
Eco57I CTGAAG 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 577
FaeI CATG 4 cut(s) 116, 245, 482, 548
FatI CATG 4 cut(s) 112, 241, 478, 544
FauI CCCGC 1 cut(s) 40
Fnu4HI GCNGC 3 cut(s) 36, 110, 519
FokI GGATG 1 cut(s) 222
Fsp4HI GCNGC 3 cut(s) 36, 110, 519
FspBI CTAG 4 cut(s) 309, 531, 549, 557
GluI GCNGC 3 cut(s) 36, 110, 519
GsuI CTGGAG 1 cut(s) 44
HaeIII GGCC 1 cut(s) 31
Hin1II CATG 4 cut(s) 116, 245, 482, 548
HinfI GANTC 3 cut(s) 86, 95, 565
Hpy188I TCNGA 1 cut(s) 428
Hpy188III TCNNGA 6 cut(s) 61, 275, 323, 370, 485, 601
HpyAV CCTTC 3 cut(s) 298, 367, 373
HpyCH4III ACNGT 2 cut(s) 350, 595
HpyCH4V TGCA 4 cut(s) 14, 23, 82, 389
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 41, 305, 515, 527
Hsp92II CATG 4 cut(s) 116, 245, 482, 548
KspI CCGCGG 1 cut(s) 36
Kzo9I GATC 1 cut(s) 538
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 7 cut(s) 9, 13, 74, 268, 386, 564, 591
Lsp1109I GCAGC 2 cut(s) 121, 505
LweI GCATC 1 cut(s) 31
MaeI CTAG 4 cut(s) 309, 531, 549, 557
MalI GATC 1 cut(s) 540
MboI GATC 1 cut(s) 538
MboII GAAGA 2 cut(s) 500, 574
MfeI CAATTG 1 cut(s) 90
MluCI AATT 3 cut(s) 90, 356, 588
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 5 cut(s) 271, 289, 484, 552, 579
MseI TTAA 4 cut(s) 192, 227, 248, 465
MspA1I CMGCKG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 579
MunI CAATTG 1 cut(s) 90
Mva1269I GAATGC 1 cut(s) 227
MvaI CCWGG 1 cut(s) 579
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 5 cut(s) 20, 41, 305, 515, 527
NdeII GATC 1 cut(s) 538
NlaIII CATG 4 cut(s) 116, 245, 482, 548
PctI GAATGC 1 cut(s) 227
PfeI GAWTC 2 cut(s) 95, 565
PfoI TCCNGGA 1 cut(s) 577
PkrI GCNGC 3 cut(s) 37, 111, 520
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
Psp6I CCWGG 1 cut(s) 577
PspGI CCWGG 1 cut(s) 577
PspPI GGNCC 1 cut(s) 30
RsaI GTAC 1 cut(s) 495
RsaNI GTAC 1 cut(s) 494
SacII CCGCGG 1 cut(s) 36
SaqAI TTAA 4 cut(s) 192, 227, 248, 465
SatI GCNGC 3 cut(s) 36, 110, 519
Sau3AI GATC 1 cut(s) 538
Sau96I GGNCC 1 cut(s) 30
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 579
SetI ASST 6 cut(s) 163, 420, 424, 495, 511, 538
SfaNI GCATC 1 cut(s) 31
Sfr303I CCGCGG 1 cut(s) 36
SgrBI CCGCGG 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 273
SmoI CTYRAG 1 cut(s) 273
Sse9I AATT 3 cut(s) 90, 356, 588
SsiI CCGC 2 cut(s) 33, 35
SspMI CTAG 4 cut(s) 309, 531, 549, 557
StyD4I CCNGG 1 cut(s) 577
TaaI ACNGT 2 cut(s) 350, 595
TasI AATT 3 cut(s) 90, 356, 588
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 2 cut(s) 95, 565
Tru1I TTAA 4 cut(s) 192, 227, 248, 465
Tru9I TTAA 4 cut(s) 192, 227, 248, 465
TseI GCWGC 2 cut(s) 109, 518
TspGWI ACGGA 1 cut(s) 222
XapI RAATTY 1 cut(s) 356
XspI CTAG 4 cut(s) 309, 531, 549, 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.