Rorug01G0377100

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
49062542 .. 49065880
3339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0377100.1

Sequence Viewer

Length: 426 bp
ATGTCGTGGCTTCCCTCCGCCGTCGCTCTCAATTGCATCGACGACTTCGCCATGAAGCAAGACCACTTCTCCGGCGTCGAGCACGTCCCGCTCAGCCACTTGGCCCACGGCAGGATCGACTCCGCCTCGGCTGTGGTCCTCCAATCATTCGCGTACCTCCCACGCGCCGCCCAGCGTCGGCTACGTCCTTACCAGCTCATCCTCTGCCTCGGCTCCGGTGACTGCGCCACTGACTCCACTTTCACTGCCGACCTCGGTTGTCAATCTCCGAAGCATTTCGATGGCCGGATTTCCGGCGTTTACGGCTACGAAGATGATGCGAAATGTGGTACGCAGACATGGATCTGCAAGGGGCTTACTTATTTTCTTATTTGCAGGCCTGGTTTACTTCTATCTCTAAGGCTTTTGATCTGTTGGAAATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0001101 GO:0003674 GO:0003824 GO:0004812 GO:0004819 GO:0004823 GO:0004832 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006425 GO:0006429 GO:0006438 GO:0006518 GO:0006520 GO:0006605 GO:0006622 GO:0006623 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007034 GO:0007041 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009267 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009719 GO:0009892 GO:0009894 GO:0009895 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010506 GO:0010507 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016070 GO:0016604 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0023051 GO:0023056 GO:0030054 GO:0030234 GO:0030695 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032006 GO:0032008 GO:0032535 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034198 GO:0034613 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042594 GO:0042886 GO:0043038 GO:0043039 GO:0043043 GO:0043085 GO:0043087 GO:0043170 GO:0043200 GO:0043201 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043547 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0055044 GO:0060589 GO:0061462 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071233 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090066 GO:0090304 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903432 GO:1904263 GO:1990253 GO:1990928
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

141

Amino Acids

15.67

Weight (kDa)

7.58

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000598)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 91
AccII CGCG 2 cut(s) 152, 165
AciI CCGC 4 cut(s) 18, 89, 123, 168
AclWI GGATC 2 cut(s) 122, 350
AcoI YGGCCR 1 cut(s) 283
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 2 cut(s) 155, 331
AfiI CCNNNNNNNGG 2 cut(s) 111, 177
AjiI CACGTC 1 cut(s) 85
AjnI CCWGG 1 cut(s) 379
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
Alw21I GWGCWC 1 cut(s) 84
AlwI GGATC 2 cut(s) 122, 350
AoxI GGCC 3 cut(s) 102, 283, 377
Asp700I GAANNNNTTC 1 cut(s) 275
AspLEI GCGC 2 cut(s) 167, 227
AspS9I GGNCC 2 cut(s) 103, 136
AsuHPI GGTGA 1 cut(s) 230
AvaII GGWCC 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 84
BccI CCATC 1 cut(s) 275
BceAI ACGGC 3 cut(s) 5, 124, 319
BcgI CGANNNNNNTGC 2 cut(s) 299, 333
BciT130I CCWGG 1 cut(s) 381
BisI GCNGC 1 cut(s) 168
BlpI GCTNAGC 1 cut(s) 92
BlsI GCNGC 1 cut(s) 169
Bme1390I CCNGG 1 cut(s) 381
Bme18I GGWCC 1 cut(s) 136
BmgBI CACGTC 1 cut(s) 85
BmgT120I GGNCC 2 cut(s) 103, 136
BmiI GGNNCC 1 cut(s) 214
BmrFI CCNGG 1 cut(s) 381
BmsI GCATC 2 cut(s) 45, 307
Bpu1102I GCTNAGC 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 4 cut(s) 106, 126, 208, 253
BsaWI WCCGGW 1 cut(s) 215
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 177
BseBI CCWGG 1 cut(s) 381
BseDI CCNNGG 4 cut(s) 106, 126, 208, 253
BseGI GGATG 1 cut(s) 198
BseLI CCNNNNNNNGG 2 cut(s) 111, 177
BseMII CTCAG 1 cut(s) 106
BseYI CCCAGC 1 cut(s) 171
Bsh1236I CGCG 2 cut(s) 152, 165
BshFI GGCC 3 cut(s) 104, 285, 379
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 4 cut(s) 72, 216, 286, 294
BslFI GGGAC 1 cut(s) 71
BslI CCNNNNNNNGG 2 cut(s) 111, 177
BsmFI GGGAC 1 cut(s) 71
BsnI GGCC 3 cut(s) 104, 285, 379
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 3 cut(s) 114, 342, 408
Bsp1720I GCTNAGC 1 cut(s) 92
BspACI CCGC 4 cut(s) 18, 89, 123, 168
BspANI GGCC 3 cut(s) 104, 285, 379
BspCNI CTCAG 1 cut(s) 105
BspFNI CGCG 2 cut(s) 152, 165
BspLI GGNNCC 1 cut(s) 214
BspPI GGATC 2 cut(s) 122, 350
BsrBI CCGCTC 1 cut(s) 91
BssECI CCNNGG 4 cut(s) 106, 126, 208, 253
BssMI GATC 3 cut(s) 114, 342, 408
BssNI GRCGYC 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 381
BstACI GRCGYC 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 377
BstDEI CTNAG 2 cut(s) 92, 398
BstDSI CCRYGG 1 cut(s) 106
BstF5I GGATG 1 cut(s) 198
BstFNI CGCG 2 cut(s) 152, 165
BstHHI GCGC 2 cut(s) 167, 227
BstKTI GATC 3 cut(s) 117, 345, 411
BstMBI GATC 3 cut(s) 114, 342, 408
BstMWI GCNNNNNNNGC 2 cut(s) 88, 303
BstNI CCWGG 1 cut(s) 381
BstSCI CCNGG 1 cut(s) 379
BstUI CGCG 2 cut(s) 152, 165
BstX2I RGATCY 1 cut(s) 342
BstYI RGATCY 1 cut(s) 342
BsuRI GGCC 3 cut(s) 104, 285, 379
BtgI CCRYGG 1 cut(s) 106
BtrI CACGTC 1 cut(s) 85
BtsCI GGATG 1 cut(s) 198
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 2 cut(s) 228, 243
Cac8I GCNNGC 1 cut(s) 377
CfoI GCGC 2 cut(s) 167, 227
Cfr13I GGNCC 2 cut(s) 103, 136
CseI GACGC 2 cut(s) 64, 164
Csp6I GTAC 2 cut(s) 154, 330
CviAII CATG 2 cut(s) 52, 339
CviQI GTAC 2 cut(s) 154, 330
DdeI CTNAG 2 cut(s) 92, 398
DpnI GATC 3 cut(s) 116, 344, 410
DpnII GATC 3 cut(s) 114, 342, 408
EaeI YGGCCR 1 cut(s) 283
EciI GGCGGA 2 cut(s) 7, 112
Eco147I AGGCCT 1 cut(s) 379
Eco47I GGWCC 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 379
FaeI CATG 2 cut(s) 55, 342
FaiI YATR 2 cut(s) 53, 340
FaqI GGGAC 1 cut(s) 71
FatI CATG 2 cut(s) 51, 338
FauI CCCGC 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 168
GlaI GCGC 2 cut(s) 166, 226
GluI GCNGC 1 cut(s) 168
GsaI CCCAGC 1 cut(s) 175
HaeIII GGCC 3 cut(s) 104, 285, 379
HapII CCGG 4 cut(s) 72, 216, 286, 294
HgaI GACGC 2 cut(s) 64, 164
HhaI GCGC 2 cut(s) 167, 227
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 2 cut(s) 55, 342
Hin6I GCGC 2 cut(s) 165, 225
HinP1I GCGC 2 cut(s) 165, 225
HinfI GANTC 2 cut(s) 119, 233
HpaII CCGG 4 cut(s) 72, 216, 286, 294
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 2 cut(s) 301, 386
Hpy188I TCNGA 1 cut(s) 270
Hpy8I GTNNAC 2 cut(s) 301, 386
Hpy99I CGWCG 4 cut(s) 26, 44, 80, 180
HpyCH4IV ACGT 2 cut(s) 84, 184
HpyCH4V TGCA 3 cut(s) 36, 348, 375
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 303
HpyF3I CTNAG 2 cut(s) 92, 398
HpySE526I ACGT 2 cut(s) 84, 184
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 2 cut(s) 55, 342
HspAI GCGC 2 cut(s) 165, 225
Kzo9I GATC 3 cut(s) 114, 342, 408
LmnI GCTCC 1 cut(s) 218
LweI GCATC 2 cut(s) 45, 307
MaeII ACGT 2 cut(s) 84, 184
MaeIII GTNAC 1 cut(s) 218
MalI GATC 3 cut(s) 116, 344, 410
MbiI CCGCTC 1 cut(s) 91
MboI GATC 3 cut(s) 114, 342, 408
MboII GAAGA 1 cut(s) 323
MfeI CAATTG 1 cut(s) 31
MflI RGATCY 1 cut(s) 342
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 1 cut(s) 31
MlyI GAGTC 2 cut(s) 113, 227
MmeI TCCRAC 1 cut(s) 395
MnlI CCTC 7 cut(s) 25, 136, 149, 167, 212, 218, 263
MroXI GAANNNNTTC 1 cut(s) 275
MslI CAYNNNNRTG 1 cut(s) 279
MspI CCGG 4 cut(s) 72, 216, 286, 294
MspR9I CCNGG 1 cut(s) 381
MunI CAATTG 1 cut(s) 31
MvaI CCWGG 1 cut(s) 381
MvnI CGCG 2 cut(s) 152, 165
MwoI GCNNNNNNNGC 2 cut(s) 88, 303
NdeII GATC 3 cut(s) 114, 342, 408
NlaIII CATG 2 cut(s) 55, 342
NlaIV GGNNCC 1 cut(s) 214
NmeAIII GCCGAG 2 cut(s) 107, 189
NmuCI GTSAC 1 cut(s) 218
PceI AGGCCT 1 cut(s) 379
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 275
PkrI GCNGC 1 cut(s) 169
PleI GAGTC 2 cut(s) 113, 227
PpsI GAGTC 2 cut(s) 113, 227
Psp6I CCWGG 1 cut(s) 379
PspFI CCCAGC 1 cut(s) 171
PspGI CCWGG 1 cut(s) 379
PspN4I GGNNCC 1 cut(s) 214
PspPI GGNCC 2 cut(s) 103, 136
PsuI RGATCY 1 cut(s) 342
RsaI GTAC 2 cut(s) 155, 331
RsaNI GTAC 2 cut(s) 154, 330
RseI CAYNNNNRTG 1 cut(s) 279
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 3 cut(s) 114, 342, 408
Sau96I GGNCC 2 cut(s) 103, 136
SchI GAGTC 2 cut(s) 113, 227
ScrFI CCNGG 1 cut(s) 381
SduI GDGCHC 1 cut(s) 84
SetI ASST 5 cut(s) 87, 159, 187, 198, 255
SfaNI GCATC 2 cut(s) 45, 307
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 279
Sse9I AATT 1 cut(s) 31
SseBI AGGCCT 1 cut(s) 379
SsiI CCGC 4 cut(s) 18, 89, 123, 168
StuI AGGCCT 1 cut(s) 379
StyD4I CCNGG 1 cut(s) 379
TaiI ACGT 2 cut(s) 87, 187
TaqI TCGA 4 cut(s) 39, 78, 117, 279
TasI AATT 1 cut(s) 31
TauI GCSGC 1 cut(s) 170
TscAI CASTG 2 cut(s) 235, 250
TseFI GTSAC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 1 cut(s) 68
TspRI CASTG 2 cut(s) 235, 250
VpaK11BI GGWCC 1 cut(s) 136
XmnI GAANNNNTTC 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.