Rmu_co8393711.1_g000001

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8393711.1
OG0000598
Physical Location & Seq
Forward (+)
14 .. 1232
1219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8393711.1_g000001.1.cds

Sequence Viewer

Length: 1219 bp
atgaagtcaataaggagagaccgtcttcgaaagattgaggaagacgctcaaagacggtgggaagagaagcaagttttcagggctgaaccccgtgaaaatcctccccaaccaggagaaaagtttttcggaaatttccctttcccgtacatgaatggtttccttcatctgggacatgcattcaccatctccaagcttgagtttgctgccgcttatcataggctaagaggtgtcaatgtgctcttaccatttgctttccattgcaccagaatgcccatcaaagctgccgccgataaacttgcaagagagctccaacagtttggctaccctccagtatttcccattgatgtgaagcaagatgaaattgcagccaaagcaaaagccgaagctggagcagagaaaaaatataagggaaagaaggccaaggctgcagcaaagttcgccggacaagtcttccaatgggaaattatgcgtgatggtttcggattgtctgacagtgagatatccgagttccaggacccggaaaagtggttgaagtttttcccaccacgtggggtggaagacctgaaagcttttgggttgggatgtgattggagacgttcctttattactacagacatgaaccctttctttgacaactttgtgaaatggcaggttaggaagctcaaatccaagggtaagattgtgaaagatgtccggtacactatattctccccattcgatgggcagccgtgtgcagatcatgatagggcaagaggagaaggagttcaaccacaagaatacattgtcatcaaaatggaggtagtagcacctttaccctcaaaatttggatcagtgttgaaagggaggaaggtattcttagcagcagcaacgttgagacccgagaccatgtatggacaaacaaatgcatgggtattacccgatgctaagtatggagcctttgagatcaacgatacggatgtctttattcttacacatagagcagcacttaattttgcttatcagaagtactctagggtcccagagaaacctacttgcttggtcgaactgactggttctgatttgattggccttccattgaagtcaccacttgcattcagtcatatcatttatgcccttcctatgttgaccatcccaactgacaaaggcactgggatagtgaccagcgtacctagtgatgctcctgatgattatatggctctgcataatttaaagtcaaaat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
Anticodon_1 tRNA-synt_1

Protein Analysis

406

Amino Acids

46.08

Weight (kDa)

9.36

Isoelectric Point (pI)

43.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000598)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09620
fragaria_vesca FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_3g34581 FvH4_4g33720 FvH4_4g33720
malus_domestica MD08G1244600.v1.1 MD15G1439400.v1.1
prunus_persica Prupe.1G582000_v2.0.a1 Prupe.2G015100_v2.0.a1 Prupe.2G123100_v2.0.a1
pyrus_communis pycom08g21210 pycom08g21220 pycom15g38730
rosa_chinensis RchiOBHm_Chr1g0336121 RchiOBHm_Chr1g0353811 RchiOBHm_Chr1g0373331 RchiOBHm_Chr4g0443191 RchiOBHm_Chr4g0443201 RchiOBHm_Chr4g0443211
rosa_laevigata RLG00000003122 RLG00000005948 RLG00000026826 RLG00000028251 RLG00000028252 RLG00000028253 RLG00000029377
rosa_multiflora Rmu_co8002498.1_g000001 Rmu_co8262279.1_g000001 Rmu_co8314139.1_g000001 Rmu_co8393711.1_g000001 Rmu_co8419167.1_g000001 Rmu_sc0007968.1_g000004 Rmu_sc0018919.1_g000004 Rmu_sc0027447.1_g000001
rosa_roxburghii Rroxscaffold_4G00284260 Rroxscaffold_4G00301490 Rroxscaffold_4G00315860 Rroxscaffold_5G00383790 Rroxscaffold_5G00383800
rosa_rugosa Rorug01G0123100 Rorug01G0238700 Rorug01G0377100 Rorug01G0377100 Rorug01G0377200 Rorug01G0377300 Rorug04G0344700 Rorug05G0347900.1
rosa_samantha Rh1AG143800 Rh1AG250300 Rh1AG386300 Rh1BG113400 Rh1BG220800 Rh1BG220900 Rh1BG350400 Rh1CG135500 Rh1CG233100 Rh1CG363500 Rh1DG150200 Rh1DG247700 Rh1DG247800 Rh1DG381300 Rh4AG399400 Rh4AG399500 Rh4BG411000 Rh4BG411100 Rh4BG411200 Rh4CG426500 Rh4CG426600 Rh4DG406100 Rh4DG406200 Rh4DG406300
rosa_wichuraiana Rw0G015190 Rw1G021850 Rw1G034870 Rw4G034440 Rw4G034450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 640
AccB7I CCANNNNNTGG 2 cut(s) 548, 719
AciI CCGC 2 cut(s) 207, 285
AclI AACGTT 1 cut(s) 869
AclWI GGATC 1 cut(s) 835
AcsI RAATTY 2 cut(s) 130, 821
AcvI CACGTG 1 cut(s) 548
AdeI CACNNNGTG 1 cut(s) 548
AfaI GTAC 4 cut(s) 146, 698, 1007, 1167
AfiI CCNNNNNNNGG 5 cut(s) 110, 166, 517, 548, 719
AgsI TTSAA 4 cut(s) 532, 767, 838, 1078
AjnI CCWGG 2 cut(s) 109, 510
AloI GAACNNNNNNTCC 2 cut(s) 747, 779
AluBI AGCT 6 cut(s) 193, 281, 307, 386, 569, 661
AluI AGCT 6 cut(s) 193, 281, 307, 386, 569, 661
Alw21I GWGCWC 2 cut(s) 240, 309
Alw26I GTCTC 4 cut(s) 12, 586, 868, 875
AlwI GGATC 1 cut(s) 835
Ama87I CYCGRG 1 cut(s) 878
AoxI GGCC 2 cut(s) 417, 1066
ApeKI GCWGC 9 cut(s) 203, 281, 365, 425, 428, 724, 860, 863, 980
ApoI RAATTY 2 cut(s) 130, 821
Asp700I GAANNNNTTC 5 cut(s) 155, 536, 623, 762, 851
AspS9I GGNCC 2 cut(s) 514, 1015
AsuC2I CCSGG 1 cut(s) 518
AsuHPI GGTGA 2 cut(s) 172, 1074
AsuII TTCGAA 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 878
AvaII GGWCC 2 cut(s) 514, 1015
BaeI ACNNNNGTAYC 4 cut(s) 942, 975, 1149, 1182
BanII GRGCYC 1 cut(s) 309
BbrPI CACGTG 1 cut(s) 548
BbsI GAAGAC 4 cut(s) 17, 48, 442, 564
Bbv12I GWGCWC 2 cut(s) 240, 309
BbvI GCAGC 9 cut(s) 190, 268, 377, 412, 440, 736, 872, 875, 992
BccI CCATC 5 cut(s) 191, 281, 467, 713, 1136
BceAI ACGGC 1 cut(s) 712
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BciT130I CCWGG 2 cut(s) 111, 512
BcnI CCSGG 1 cut(s) 518
BcoDI GTCTC 4 cut(s) 12, 586, 868, 875
BfaI CTAG 2 cut(s) 1011, 1170
BfmI CTRYAG 2 cut(s) 426, 609
BfuAI ACCTGC 1 cut(s) 640
BmcAI AGTACT 1 cut(s) 1007
Bme1390I CCNGG 3 cut(s) 111, 512, 518
Bme18I GGWCC 2 cut(s) 514, 1015
BmeT110I CYCGRG 1 cut(s) 878
BmgT120I GGNCC 2 cut(s) 514, 1015
BmiI GGNNCC 4 cut(s) 516, 934, 1016, 1017
BmrFI CCNGG 3 cut(s) 111, 512, 518
BmrI ACTGGG 1 cut(s) 1158
BmsI GCATC 2 cut(s) 910, 1165
BmuI ACTGGG 1 cut(s) 1158
BpiI GAAGAC 4 cut(s) 17, 48, 442, 564
BpmI CTGGAG 2 cut(s) 312, 408
Bpu14I TTCGAA 1 cut(s) 28
BpuEI CTTGAG 1 cut(s) 215
BpuMI CCSGG 1 cut(s) 518
BsaAI YACGTR 1 cut(s) 548
BsaI GGTCTC 3 cut(s) 12, 868, 875
BsaJI CCNNGG 2 cut(s) 420, 669
BsaWI WCCGGW 1 cut(s) 693
BsaXI ACNNNNNCTCC 4 cut(s) 7, 37, 747, 777
Bsc4I CCNNNNNNNGG 5 cut(s) 110, 166, 517, 548, 719
Bse1I ACTGG 3 cut(s) 329, 1054, 1153
Bse3DI GCAATG 1 cut(s) 256
BseBI CCWGG 2 cut(s) 111, 512
BseDI CCNNGG 2 cut(s) 420, 669
BseGI GGATG 3 cut(s) 587, 961, 1128
BseLI CCNNNNNNNGG 5 cut(s) 110, 166, 517, 548, 719
BseMI GCAATG 1 cut(s) 256
BseNI ACTGG 3 cut(s) 329, 1054, 1153
BseRI GAGGAG 1 cut(s) 768
BseXI GCAGC 9 cut(s) 190, 268, 377, 412, 440, 736, 872, 875, 992
BsgI GTGCAG 1 cut(s) 753
BshFI GGCC 2 cut(s) 419, 1068
BsiHKAI GWGCWC 2 cut(s) 240, 309
BsiHKCI CYCGRG 1 cut(s) 878
BsiSI CCGG 3 cut(s) 441, 518, 694
BslFI GGGAC 2 cut(s) 183, 1001
BslI CCNNNNNNNGG 5 cut(s) 110, 166, 517, 548, 719
BsmAI GTCTC 4 cut(s) 12, 586, 868, 875
BsmBI CGTCTC 1 cut(s) 586
BsmFI GGGAC 2 cut(s) 183, 1001
BsmI GAATGC 3 cut(s) 176, 273, 1091
BsnI GGCC 2 cut(s) 419, 1068
Bso31I GGTCTC 3 cut(s) 12, 868, 875
BsoBI CYCGRG 1 cut(s) 878
Bsp119I TTCGAA 1 cut(s) 28
Bsp1286I GDGCHC 2 cut(s) 240, 309
Bsp143I GATC 3 cut(s) 736, 827, 942
BspACI CCGC 2 cut(s) 207, 285
BspANI GGCC 2 cut(s) 419, 1068
BspHI TCATGA 1 cut(s) 739
BspLI GGNNCC 4 cut(s) 516, 934, 1016, 1017
BspMAI CTGCAG 1 cut(s) 430
BspMI ACCTGC 1 cut(s) 640
BspPI GGATC 1 cut(s) 835
BspT104I TTCGAA 1 cut(s) 28
BspTNI GGTCTC 3 cut(s) 12, 868, 875
BsrDI GCAATG 1 cut(s) 256
BsrI ACTGG 3 cut(s) 329, 1054, 1153
BssECI CCNNGG 2 cut(s) 420, 669
BssMI GATC 3 cut(s) 736, 827, 942
BssT1I CCWWGG 2 cut(s) 420, 669
Bst2UI CCWGG 2 cut(s) 111, 512
Bst4CI ACNGT 4 cut(s) 23, 57, 315, 494
Bst6I CTCTTC 1 cut(s) 57
BstBAI YACGTR 1 cut(s) 548
BstBI TTCGAA 1 cut(s) 28
BstDEI CTNAG 3 cut(s) 221, 856, 924
BstF5I GGATG 3 cut(s) 587, 961, 1128
BstKTI GATC 3 cut(s) 739, 830, 945
BstMAI GTCTC 4 cut(s) 12, 586, 868, 875
BstMBI GATC 3 cut(s) 736, 827, 942
BstMWI GCNNNNNNNGC 3 cut(s) 371, 425, 437
BstNI CCWGG 2 cut(s) 111, 512
BstNSI RCATGY 1 cut(s) 176
BstSCI CCNGG 3 cut(s) 109, 510, 516
BstSFI CTRYAG 2 cut(s) 426, 609
BstV1I GCAGC 9 cut(s) 190, 268, 377, 412, 440, 736, 872, 875, 992
BstV2I GAAGAC 4 cut(s) 17, 48, 442, 564
BstXI CCANNNNNNTGG 1 cut(s) 317
BsuRI GGCC 2 cut(s) 419, 1068
BtsCI GGATG 3 cut(s) 587, 961, 1128
BtsIMutI CAGTG 3 cut(s) 499, 837, 1146
BveI ACCTGC 1 cut(s) 640
CciI TCATGA 1 cut(s) 739
Cfr13I GGNCC 2 cut(s) 514, 1015
CseI GACGC 1 cut(s) 53
Csp6I GTAC 4 cut(s) 145, 697, 1006, 1166
CspCI CAANNNNNGTGG 2 cut(s) 38, 73
CviAII CATG 6 cut(s) 148, 173, 616, 740, 886, 906
CviQI GTAC 4 cut(s) 145, 697, 1006, 1166
DdeI CTNAG 3 cut(s) 221, 856, 924
DpnI GATC 3 cut(s) 738, 829, 944
DpnII GATC 3 cut(s) 736, 827, 942
DraI TTTAAA 1 cut(s) 1209
DraIII CACNNNGTG 1 cut(s) 548
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Ecl136II GAGCTC 1 cut(s) 307
Eco130I CCWWGG 2 cut(s) 420, 669
Eco24I GRGCYC 1 cut(s) 309
Eco31I GGTCTC 3 cut(s) 12, 868, 875
Eco32I GATATC 1 cut(s) 501
Eco47I GGWCC 2 cut(s) 514, 1015
Eco53kI GAGCTC 1 cut(s) 307
Eco72I CACGTG 1 cut(s) 548
Eco88I CYCGRG 1 cut(s) 878
EcoICRI GAGCTC 1 cut(s) 307
EcoO109I RGGNCCY 2 cut(s) 514, 1015
EcoRII CCWGG 2 cut(s) 109, 510
EcoRV GATATC 1 cut(s) 501
EcoT14I CCWWGG 2 cut(s) 420, 669
EcoT22I ATGCAT 2 cut(s) 178, 907
EcoT38I GRGCYC 1 cut(s) 309
ErhI CCWWGG 2 cut(s) 420, 669
Esp3I CGTCTC 1 cut(s) 586
FaeI CATG 6 cut(s) 151, 176, 619, 743, 889, 909
FalI AAGNNNNNCTT 2 cut(s) 839, 871
FaqI GGGAC 2 cut(s) 183, 1001
FatI CATG 6 cut(s) 147, 172, 615, 739, 885, 905
FokI GGATG 3 cut(s) 594, 968, 1115
FriOI GRGCYC 1 cut(s) 309
FspBI CTAG 2 cut(s) 1011, 1170
GsuI CTGGAG 2 cut(s) 312, 408
HaeIII GGCC 2 cut(s) 419, 1068
HapII CCGG 3 cut(s) 441, 518, 694
HgaI GACGC 1 cut(s) 53
Hin1II CATG 6 cut(s) 151, 176, 619, 743, 889, 909
HincII GTYRAC 1 cut(s) 1125
HindII GTYRAC 1 cut(s) 1125
HindIII AAGCTT 2 cut(s) 191, 567
HpaII CCGG 3 cut(s) 441, 518, 694
HphI GGTGA 2 cut(s) 172, 1074
Hpy166II GTNNAC 2 cut(s) 699, 1125
Hpy188I TCNGA 6 cut(s) 128, 482, 490, 505, 1002, 1057
Hpy188III TCNNGA 2 cut(s) 740, 1181
Hpy8I GTNNAC 2 cut(s) 699, 1125
HpyAV CCTTC 6 cut(s) 170, 409, 752, 841, 1079, 1124
HpyCH4III ACNGT 4 cut(s) 23, 57, 315, 494
HpyCH4IV ACGT 3 cut(s) 547, 595, 869
HpyCH4V TGCA 9 cut(s) 176, 261, 299, 365, 428, 734, 905, 1091, 1201
HpyF10VI GCNNNNNNNGC 3 cut(s) 371, 425, 437
HpyF3I CTNAG 3 cut(s) 221, 856, 924
HpySE526I ACGT 3 cut(s) 547, 595, 869
Hsp92II CATG 6 cut(s) 151, 176, 619, 743, 889, 909
KflI GGGWCCC 1 cut(s) 1015
Kzo9I GATC 3 cut(s) 736, 827, 942
LmnI GCTCC 4 cut(s) 312, 389, 932, 1183
Lsp1109I GCAGC 9 cut(s) 190, 268, 377, 412, 440, 736, 872, 875, 992
LweI GCATC 2 cut(s) 910, 1165
MaeI CTAG 2 cut(s) 1011, 1170
MaeII ACGT 3 cut(s) 547, 595, 869
MaeIII GTNAC 2 cut(s) 1080, 1156
MalI GATC 3 cut(s) 738, 829, 944
MboI GATC 3 cut(s) 736, 827, 942
MboII GAAGA 5 cut(s) 17, 53, 74, 442, 569
MhlI GDGCHC 2 cut(s) 240, 309
MluCI AATT 6 cut(s) 130, 360, 462, 821, 988, 1204
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 8 cut(s) 31, 111, 218, 336, 746, 790, 826, 837
Mph1103I ATGCAT 2 cut(s) 178, 907
MroXI GAANNNNTTC 5 cut(s) 155, 536, 623, 762, 851
MseI TTAA 2 cut(s) 987, 1208
MslI CAYNNNNRTG 3 cut(s) 266, 344, 791
MspI CCGG 3 cut(s) 441, 518, 694
MspR9I CCNGG 3 cut(s) 111, 512, 518
Mva1269I GAATGC 3 cut(s) 176, 273, 1091
MvaI CCWGG 2 cut(s) 111, 512
MwoI GCNNNNNNNGC 3 cut(s) 371, 425, 437
NciI CCSGG 1 cut(s) 518
NdeII GATC 3 cut(s) 736, 827, 942
NlaIII CATG 6 cut(s) 151, 176, 619, 743, 889, 909
NlaIV GGNNCC 4 cut(s) 516, 934, 1016, 1017
NmuCI GTSAC 2 cut(s) 1080, 1156
NsiI ATGCAT 2 cut(s) 178, 907
NspI RCATGY 1 cut(s) 176
NspV TTCGAA 1 cut(s) 28
PagI TCATGA 1 cut(s) 739
PctI GAATGC 3 cut(s) 176, 273, 1091
PdmI GAANNNNTTC 5 cut(s) 155, 536, 623, 762, 851
PflMI CCANNNNNTGG 2 cut(s) 548, 719
PfoI TCCNGGA 1 cut(s) 510
PmaCI CACGTG 1 cut(s) 548
PmlI CACGTG 1 cut(s) 548
Ppu21I YACGTR 1 cut(s) 548
PpuMI RGGWCCY 2 cut(s) 514, 1015
Psp124BI GAGCTC 1 cut(s) 309
Psp1406I AACGTT 1 cut(s) 869
Psp5II RGGWCCY 2 cut(s) 514, 1015
Psp6I CCWGG 2 cut(s) 109, 510
PspCI CACGTG 1 cut(s) 548
PspGI CCWGG 2 cut(s) 109, 510
PspN4I GGNNCC 4 cut(s) 516, 934, 1016, 1017
PspPI GGNCC 2 cut(s) 514, 1015
PspPPI RGGWCCY 2 cut(s) 514, 1015
PstI CTGCAG 1 cut(s) 430
RsaI GTAC 4 cut(s) 146, 698, 1007, 1167
RsaNI GTAC 4 cut(s) 145, 697, 1006, 1166
RseI CAYNNNNRTG 3 cut(s) 266, 344, 791
SacI GAGCTC 1 cut(s) 309
SaqAI TTAA 2 cut(s) 987, 1208
Sau3AI GATC 3 cut(s) 736, 827, 942
Sau96I GGNCC 2 cut(s) 514, 1015
ScaI AGTACT 1 cut(s) 1007
ScrFI CCNGG 3 cut(s) 111, 512, 518
SduI GDGCHC 2 cut(s) 240, 309
SfaNI GCATC 2 cut(s) 910, 1165
SfcI CTRYAG 2 cut(s) 426, 609
SfuI TTCGAA 1 cut(s) 28
SinI GGWCC 2 cut(s) 514, 1015
SmiMI CAYNNNNRTG 3 cut(s) 266, 344, 791
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 6 cut(s) 130, 360, 462, 821, 988, 1204
SsiI CCGC 2 cut(s) 207, 285
SspMI CTAG 2 cut(s) 1011, 1170
SstI GAGCTC 1 cut(s) 309
StyD4I CCNGG 3 cut(s) 109, 510, 516
StyI CCWWGG 2 cut(s) 420, 669
TaaI ACNGT 4 cut(s) 23, 57, 315, 494
TaiI ACGT 3 cut(s) 550, 598, 872
TaqI TCGA 3 cut(s) 28, 717, 1041
TasI AATT 6 cut(s) 130, 360, 462, 821, 988, 1204
TatI WGTACW 1 cut(s) 1005
TauI GCSGC 2 cut(s) 209, 287
Tru1I TTAA 2 cut(s) 987, 1208
Tru9I TTAA 2 cut(s) 987, 1208
TscAI CASTG 3 cut(s) 499, 837, 1153
TseFI GTSAC 2 cut(s) 1080, 1156
TseI GCWGC 9 cut(s) 203, 281, 365, 425, 428, 724, 860, 863, 980
Tsp45I GTSAC 2 cut(s) 1080, 1156
TspDTI ATGAA 5 cut(s) 17, 152, 164, 372, 632
TspGWI ACGGA 1 cut(s) 968
TspRI CASTG 3 cut(s) 499, 837, 1153
Van91I CCANNNNNTGG 2 cut(s) 548, 719
VpaK11BI GGWCC 2 cut(s) 514, 1015
XapI RAATTY 2 cut(s) 130, 821
XceI RCATGY 1 cut(s) 176
XmnI GAANNNNTTC 5 cut(s) 155, 536, 623, 762, 851
XspI CTAG 2 cut(s) 1011, 1170
ZrmI AGTACT 1 cut(s) 1007
Zsp2I ATGCAT 2 cut(s) 178, 907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.