RLG00000003122

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000598
Physical Location & Seq
Reverse (-)
44592411 .. 44594167
1757 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003122

Sequence Viewer

Length: 456 bp
ATGTCCGTGTCTGGGTTGCTGCTGACAATAGTAGAAAACCACCTTAGAGAGAGCGACGGCGACGGCTTGCTCCTCATCGTTGGTCTAGCAGAGGCGCAATCTATCGTCGTCGAGCGAGTTTCAAAGGTAAGAAAGGGGAAGTGGGTTTTGCGGCTTGGAGTAGGTTTCTTTTTTGAGGTTTGGAGCAGGTGTTGCGGATTTGCAGCGGCGATTGAACTAGGTGCGGTTTGTGTAGCCGCAGTGAGTGAGGATTGGCTGAATAGGAGGCCTCGGTTGTTGCGACGGCGGTTGCTAAAAGGAGGCAGCGCTGATGCTGCGTTGGAGGGGACGTCCGCCGGAATCTGTGACTGCGGCGATGATTGGCAGAGGCAGATTAAAGTCTGCTATGGTGTTGTTTTTGGTACCCTTGGGCCTGGGCCTGGGACAAAGTCTTTTGGGCTTAGTCTTAATCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.19

Weight (kDa)

8.61

Isoelectric Point (pI)

32.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000598)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09620
fragaria_vesca FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_3g34581 FvH4_4g33720 FvH4_4g33720
malus_domestica MD08G1244600.v1.1 MD15G1439400.v1.1
prunus_persica Prupe.1G582000_v2.0.a1 Prupe.2G015100_v2.0.a1 Prupe.2G123100_v2.0.a1
pyrus_communis pycom08g21210 pycom08g21220 pycom15g38730
rosa_chinensis RchiOBHm_Chr1g0336121 RchiOBHm_Chr1g0353811 RchiOBHm_Chr1g0373331 RchiOBHm_Chr4g0443191 RchiOBHm_Chr4g0443201 RchiOBHm_Chr4g0443211
rosa_laevigata RLG00000003122 RLG00000005948 RLG00000026826 RLG00000028251 RLG00000028252 RLG00000028253 RLG00000029377
rosa_multiflora Rmu_co8002498.1_g000001 Rmu_co8262279.1_g000001 Rmu_co8314139.1_g000001 Rmu_co8393711.1_g000001 Rmu_co8419167.1_g000001 Rmu_sc0007968.1_g000004 Rmu_sc0018919.1_g000004 Rmu_sc0027447.1_g000001
rosa_roxburghii Rroxscaffold_4G00284260 Rroxscaffold_4G00301490 Rroxscaffold_4G00315860 Rroxscaffold_5G00383790 Rroxscaffold_5G00383800
rosa_rugosa Rorug01G0123100 Rorug01G0238700 Rorug01G0377100 Rorug01G0377100 Rorug01G0377200 Rorug01G0377300 Rorug04G0344700 Rorug05G0347900.1
rosa_samantha Rh1AG143800 Rh1AG250300 Rh1AG386300 Rh1BG113400 Rh1BG220800 Rh1BG220900 Rh1BG350400 Rh1CG135500 Rh1CG233100 Rh1CG363500 Rh1DG150200 Rh1DG247700 Rh1DG247800 Rh1DG381300 Rh4AG399400 Rh4AG399500 Rh4BG411000 Rh4BG411100 Rh4BG411200 Rh4CG426500 Rh4CG426600 Rh4DG406100 Rh4DG406200 Rh4DG406300
rosa_wichuraiana Rw0G015190 Rw1G021850 Rw1G034870 Rw4G034440 Rw4G034450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 177
AatII GACGTC 1 cut(s) 332
Acc36I ACCTGC 1 cut(s) 177
Acc65I GGTACC 1 cut(s) 401
AccB1I GGYRCC 1 cut(s) 401
AciI CCGC 8 cut(s) 151, 195, 206, 224, 237, 286, 333, 351
AcyI GRCGYC 1 cut(s) 329
AfaI GTAC 1 cut(s) 403
AfeI AGCGCT 1 cut(s) 307
AfiI CCNNNNNNNGG 2 cut(s) 12, 419
AgsI TTSAA 2 cut(s) 123, 215
AjnI CCWGG 2 cut(s) 412, 418
Aor51HI AGCGCT 1 cut(s) 307
AoxI GGCC 3 cut(s) 266, 410, 416
ApeKI GCWGC 4 cut(s) 19, 203, 303, 314
Asp718I GGTACC 1 cut(s) 401
AspLEI GCGC 2 cut(s) 97, 308
AspS9I GGNCC 2 cut(s) 410, 416
BanI GGYRCC 1 cut(s) 401
BbvI GCAGC 4 cut(s) 6, 215, 301, 315
BceAI ACGGC 3 cut(s) 73, 79, 299
BciT130I CCWGG 2 cut(s) 414, 420
BfaI CTAG 3 cut(s) 86, 218, 454
BfoI RGCGCY 1 cut(s) 309
BfuAI ACCTGC 1 cut(s) 177
BisI GCNGC 8 cut(s) 20, 152, 204, 207, 237, 304, 315, 352
BlsI GCNGC 8 cut(s) 21, 153, 205, 208, 238, 305, 316, 353
Bme1390I CCNGG 2 cut(s) 414, 420
BmgT120I GGNCC 2 cut(s) 410, 416
BmiI GGNNCC 1 cut(s) 403
BmrFI CCNGG 2 cut(s) 414, 420
BmsI GCATC 1 cut(s) 301
BsaHI GRCGYC 1 cut(s) 329
BsaJI CCNNGG 4 cut(s) 269, 406, 413, 419
BsaXI ACNNNNNCTCC 4 cut(s) 175, 205, 314, 344
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 419
BseBI CCWGG 2 cut(s) 414, 420
BseDI CCNNGG 4 cut(s) 269, 406, 413, 419
BseLI CCNNNNNNNGG 2 cut(s) 12, 419
BseRI GAGGAG 1 cut(s) 62
BseXI GCAGC 4 cut(s) 6, 215, 301, 315
BshFI GGCC 3 cut(s) 268, 412, 418
BshNI GGYRCC 1 cut(s) 401
BsiSI CCGG 1 cut(s) 336
BslFI GGGAC 2 cut(s) 340, 436
BslI CCNNNNNNNGG 2 cut(s) 12, 419
BsmFI GGGAC 2 cut(s) 340, 436
BsnI GGCC 3 cut(s) 268, 412, 418
BspACI CCGC 8 cut(s) 151, 195, 206, 224, 237, 286, 333, 351
BspANI GGCC 3 cut(s) 268, 412, 418
BspLI GGNNCC 1 cut(s) 403
BspMI ACCTGC 1 cut(s) 177
BspT107I GGYRCC 1 cut(s) 401
BssECI CCNNGG 4 cut(s) 269, 406, 413, 419
BssNI GRCGYC 1 cut(s) 329
BssT1I CCWWGG 1 cut(s) 406
Bst2UI CCWGG 2 cut(s) 414, 420
BstACI GRCGYC 1 cut(s) 329
BstAPI GCANNNNNTGC 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 68
BstDEI CTNAG 2 cut(s) 44, 440
BstH2I RGCGCY 1 cut(s) 309
BstHHI GCGC 2 cut(s) 97, 308
BstMWI GCNNNNNNNGC 2 cut(s) 192, 314
BstNI CCWGG 2 cut(s) 414, 420
BstSCI CCNGG 2 cut(s) 412, 418
BstV1I GCAGC 4 cut(s) 6, 215, 301, 315
BsuRI GGCC 3 cut(s) 268, 412, 418
BtgZI GCGATG 1 cut(s) 369
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 246
BveI ACCTGC 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 68
CfoI GCGC 2 cut(s) 97, 308
Cfr13I GGNCC 2 cut(s) 410, 416
Csp6I GTAC 1 cut(s) 402
CviJI RGCY 8 cut(s) 66, 154, 236, 256, 268, 412, 418, 439
CviKI_1 RGCY 8 cut(s) 66, 154, 236, 256, 268, 412, 418, 439
CviQI GTAC 1 cut(s) 402
DdeI CTNAG 2 cut(s) 44, 440
EciI GGCGGA 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 406
Eco147I AGGCCT 1 cut(s) 268
Eco47III AGCGCT 1 cut(s) 307
EcoRII CCWGG 2 cut(s) 412, 418
EcoT14I CCWWGG 1 cut(s) 406
ErhI CCWWGG 1 cut(s) 406
FaiI YATR 1 cut(s) 387
FaqI GGGAC 2 cut(s) 340, 436
Fnu4HI GCNGC 8 cut(s) 20, 152, 204, 207, 237, 304, 315, 352
Fsp4HI GCNGC 8 cut(s) 20, 152, 204, 207, 237, 304, 315, 352
FspBI CTAG 3 cut(s) 86, 218, 454
GlaI GCGC 2 cut(s) 96, 307
GluI GCNGC 8 cut(s) 20, 152, 204, 207, 237, 304, 315, 352
HaeII RGCGCY 1 cut(s) 309
HaeIII GGCC 3 cut(s) 268, 412, 418
HapII CCGG 1 cut(s) 336
HhaI GCGC 2 cut(s) 97, 308
Hin1I GRCGYC 1 cut(s) 329
Hin6I GCGC 2 cut(s) 95, 306
HinP1I GCGC 2 cut(s) 95, 306
HinfI GANTC 1 cut(s) 339
HpaII CCGG 1 cut(s) 336
Hpy99I CGWCG 5 cut(s) 59, 65, 110, 113, 285
HpyCH4IV ACGT 1 cut(s) 329
HpyCH4V TGCA 1 cut(s) 203
HpyF10VI GCNNNNNNNGC 2 cut(s) 192, 314
HpyF3I CTNAG 2 cut(s) 44, 440
HpySE526I ACGT 1 cut(s) 329
Hsp92I GRCGYC 1 cut(s) 329
HspAI GCGC 2 cut(s) 95, 306
KpnI GGTACC 1 cut(s) 405
LmnI GCTCC 2 cut(s) 75, 183
LpnPI CCDG 6 cut(s) 172, 349, 399, 405, 426, 432
Lsp1109I GCAGC 4 cut(s) 6, 215, 301, 315
LweI GCATC 1 cut(s) 301
MaeI CTAG 3 cut(s) 86, 218, 454
MaeII ACGT 1 cut(s) 329
MaeIII GTNAC 1 cut(s) 344
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 9 cut(s) 83, 85, 169, 241, 258, 279, 293, 316, 360
MseI TTAA 2 cut(s) 375, 447
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 1 cut(s) 336
MspR9I CCNGG 2 cut(s) 414, 420
MvaI CCWGG 2 cut(s) 414, 420
MwoI GCNNNNNNNGC 2 cut(s) 192, 314
NlaIV GGNNCC 1 cut(s) 403
NmuCI GTSAC 1 cut(s) 344
PaqCI CACCTGC 1 cut(s) 177
PceI AGGCCT 1 cut(s) 268
PcsI WCGNNNNNNNCGW 1 cut(s) 277
PfeI GAWTC 1 cut(s) 339
PflFI GACNNNGTC 1 cut(s) 427
PkrI GCNGC 8 cut(s) 21, 153, 205, 208, 238, 305, 316, 353
Psp6I CCWGG 2 cut(s) 412, 418
PspGI CCWGG 2 cut(s) 412, 418
PspN4I GGNNCC 1 cut(s) 403
PspPI GGNCC 2 cut(s) 410, 416
PsyI GACNNNGTC 1 cut(s) 427
RsaI GTAC 1 cut(s) 403
RsaNI GTAC 1 cut(s) 402
SaqAI TTAA 2 cut(s) 375, 447
SatI GCNGC 8 cut(s) 20, 152, 204, 207, 237, 304, 315, 352
Sau96I GGNCC 2 cut(s) 410, 416
ScrFI CCNGG 2 cut(s) 414, 420
SetI ASST 7 cut(s) 45, 129, 166, 180, 191, 223, 332
SfaNI GCATC 1 cut(s) 301
SseBI AGGCCT 1 cut(s) 268
SsiI CCGC 8 cut(s) 151, 195, 206, 224, 237, 286, 333, 351
SspMI CTAG 3 cut(s) 86, 218, 454
StuI AGGCCT 1 cut(s) 268
StyD4I CCNGG 2 cut(s) 412, 418
StyI CCWWGG 1 cut(s) 406
TaiI ACGT 1 cut(s) 332
TaqI TCGA 1 cut(s) 111
TauI GCSGC 4 cut(s) 154, 209, 239, 354
TfiI GAWTC 1 cut(s) 339
Tru1I TTAA 2 cut(s) 375, 447
Tru9I TTAA 2 cut(s) 375, 447
TscAI CASTG 1 cut(s) 246
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 4 cut(s) 19, 203, 303, 314
Tsp45I GTSAC 1 cut(s) 344
TspRI CASTG 1 cut(s) 246
Tth111I GACNNNGTC 1 cut(s) 427
XspI CTAG 3 cut(s) 86, 218, 454
ZraI GACGTC 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.