Rmu_co8262279.1_g000001

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8262279.1
OG0000598
Physical Location & Seq
Forward (+)
1 .. 687
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8262279.1_g000001.1.cds

Sequence Viewer

Length: 602 bp
gatggcctgttgctgatgcttcagacttaaccctccagagtgcgaataagtatttgcaagacttcattgttttaatgaggaagctttttcacaagcaagtttcaggttcaaataaaggccataagggtacttcagttacattgatcactggagagaacaagctaactggcttggtatatgttaatgagcattttgatgggtggaaggcagagtgcttgaaaatacttcaaattcactttaacagtgacactcgtacattttcttctgacaagctgatacaggaggcgctacaaaaaagttctattggtcattttaaagattttcgagaaaccctgaagttgtgtatgcctttcataaggtcaaagatggatgaagcaattgcgcttggggctcgtgccttggacttaatgttgccatttggagagattgaggtccttcatgagaacttggacttgatccagaggcaaatcggtcttcaagagttgcatgttttgtcctttgccaaccctgatgctcgggctttagctggtcctcatgtcaagcagatagatcggaatcctccatttcctgggagccccactgccatcttcttgacttattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0001101 GO:0003674 GO:0003824 GO:0004812 GO:0004819 GO:0004823 GO:0004832 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006425 GO:0006429 GO:0006438 GO:0006518 GO:0006520 GO:0006605 GO:0006622 GO:0006623 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007034 GO:0007041 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009267 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009719 GO:0009892 GO:0009894 GO:0009895 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010506 GO:0010507 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016070 GO:0016604 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0023051 GO:0023056 GO:0030054 GO:0030234 GO:0030695 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032006 GO:0032008 GO:0032535 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034198 GO:0034613 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042594 GO:0042886 GO:0043038 GO:0043039 GO:0043043 GO:0043085 GO:0043087 GO:0043170 GO:0043200 GO:0043201 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043547 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0055044 GO:0060589 GO:0061462 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071233 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090066 GO:0090304 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903432 GO:1904263 GO:1990253 GO:1990928
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
Anticodon_1 tRNA-synt_1

Protein Analysis

199

Amino Acids

22.39

Weight (kDa)

7.25

Isoelectric Point (pI)

47.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000598)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09620
fragaria_vesca FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_3g34581 FvH4_4g33720 FvH4_4g33720
malus_domestica MD08G1244600.v1.1 MD15G1439400.v1.1
prunus_persica Prupe.1G582000_v2.0.a1 Prupe.2G015100_v2.0.a1 Prupe.2G123100_v2.0.a1
pyrus_communis pycom08g21210 pycom08g21220 pycom15g38730
rosa_chinensis RchiOBHm_Chr1g0336121 RchiOBHm_Chr1g0353811 RchiOBHm_Chr1g0373331 RchiOBHm_Chr4g0443191 RchiOBHm_Chr4g0443201 RchiOBHm_Chr4g0443211
rosa_laevigata RLG00000003122 RLG00000005948 RLG00000026826 RLG00000028251 RLG00000028252 RLG00000028253 RLG00000029377
rosa_multiflora Rmu_co8002498.1_g000001 Rmu_co8262279.1_g000001 Rmu_co8314139.1_g000001 Rmu_co8393711.1_g000001 Rmu_co8419167.1_g000001 Rmu_sc0007968.1_g000004 Rmu_sc0018919.1_g000004 Rmu_sc0027447.1_g000001
rosa_roxburghii Rroxscaffold_4G00284260 Rroxscaffold_4G00301490 Rroxscaffold_4G00315860 Rroxscaffold_5G00383790 Rroxscaffold_5G00383800
rosa_rugosa Rorug01G0123100 Rorug01G0238700 Rorug01G0377100 Rorug01G0377100 Rorug01G0377200 Rorug01G0377300 Rorug04G0344700 Rorug05G0347900.1
rosa_samantha Rh1AG143800 Rh1AG250300 Rh1AG386300 Rh1BG113400 Rh1BG220800 Rh1BG220900 Rh1BG350400 Rh1CG135500 Rh1CG233100 Rh1CG363500 Rh1DG150200 Rh1DG247700 Rh1DG247800 Rh1DG381300 Rh4AG399400 Rh4AG399500 Rh4BG411000 Rh4BG411100 Rh4BG411200 Rh4CG426500 Rh4CG426600 Rh4DG406100 Rh4DG406200 Rh4DG406300
rosa_wichuraiana Rw0G015190 Rw1G021850 Rw1G034870 Rw4G034440 Rw4G034450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 568
AclWI GGATC 1 cut(s) 450
AcsI RAATTY 1 cut(s) 230
AcuI CTGAAG 3 cut(s) 5, 116, 355
AfaI GTAC 2 cut(s) 129, 255
AfiI CCNNNNNNNGG 1 cut(s) 568
AgsI TTSAA 4 cut(s) 110, 219, 229, 478
AjnI CCWGG 1 cut(s) 567
AluBI AGCT 4 cut(s) 84, 162, 273, 526
AluI AGCT 4 cut(s) 84, 162, 273, 526
AlwI GGATC 1 cut(s) 450
Ama87I CYCGRG 1 cut(s) 515
AoxI GGCC 2 cut(s) 4, 117
ApoI RAATTY 1 cut(s) 230
AspLEI GCGC 2 cut(s) 288, 384
AspS9I GGNCC 2 cut(s) 432, 529
AvaI CYCGRG 1 cut(s) 515
AvaII GGWCC 2 cut(s) 432, 529
BaeI ACNNNNGTAYC 2 cut(s) 119, 152
BanII GRGCYC 2 cut(s) 393, 577
BarI GAAGNNNNNNTAC 2 cut(s) 246, 278
BauI CACGAG 1 cut(s) 392
BbsI GAAGAC 1 cut(s) 466
BccI CCATC 3 cut(s) 190, 360, 592
BcgI CGANNNNNNTGC 2 cut(s) 532, 566
BciT130I CCWGG 1 cut(s) 569
BclI TGATCA 1 cut(s) 143
BfoI RGCGCY 1 cut(s) 289
Bme1390I CCNGG 1 cut(s) 569
Bme18I GGWCC 2 cut(s) 432, 529
BmeT110I CYCGRG 1 cut(s) 515
BmgT120I GGNCC 2 cut(s) 432, 529
BmiI GGNNCC 1 cut(s) 574
BmrFI CCNGG 1 cut(s) 569
BmsI GCATC 2 cut(s) 6, 501
BpiI GAAGAC 1 cut(s) 466
BpmI CTGGAG 2 cut(s) 19, 170
BsaBI GATNNNNATC 1 cut(s) 554
BsaJI CCNNGG 2 cut(s) 398, 568
Bsc4I CCNNNNNNNGG 1 cut(s) 568
Bse1I ACTGG 2 cut(s) 153, 171
Bse8I GATNNNNATC 1 cut(s) 554
BseBI CCWGG 1 cut(s) 569
BseDI CCNNGG 2 cut(s) 398, 568
BseGI GGATG 1 cut(s) 375
BseJI GATNNNNATC 1 cut(s) 554
BseLI CCNNNNNNNGG 1 cut(s) 568
BseNI ACTGG 2 cut(s) 153, 171
BshFI GGCC 2 cut(s) 6, 119
BsiHKCI CYCGRG 1 cut(s) 515
BslI CCNNNNNNNGG 1 cut(s) 568
BsnI GGCC 2 cut(s) 6, 119
BsoBI CYCGRG 1 cut(s) 515
Bsp1286I GDGCHC 2 cut(s) 393, 577
Bsp143I GATC 3 cut(s) 143, 455, 549
BspANI GGCC 2 cut(s) 6, 119
BspHI TCATGA 1 cut(s) 438
BspLI GGNNCC 1 cut(s) 574
BspPI GGATC 1 cut(s) 450
BsrI ACTGG 2 cut(s) 153, 171
BssECI CCNNGG 2 cut(s) 398, 568
BssMI GATC 3 cut(s) 143, 455, 549
BssSI CACGAG 1 cut(s) 392
BssT1I CCWWGG 1 cut(s) 398
Bst2BI CACGAG 1 cut(s) 392
Bst2UI CCWGG 1 cut(s) 569
Bst4CI ACNGT 1 cut(s) 244
BstF5I GGATG 1 cut(s) 375
BstH2I RGCGCY 1 cut(s) 289
BstHHI GCGC 2 cut(s) 288, 384
BstKTI GATC 3 cut(s) 146, 458, 552
BstMBI GATC 3 cut(s) 143, 455, 549
BstMWI GCNNNNNNNGC 1 cut(s) 388
BstNI CCWGG 1 cut(s) 569
BstNSI RCATGY 1 cut(s) 490
BstSCI CCNGG 1 cut(s) 567
BstV2I GAAGAC 1 cut(s) 466
BsuRI GGCC 2 cut(s) 6, 119
BtsCI GGATG 1 cut(s) 375
BtsI GCAGTG 1 cut(s) 578
BtsIMutI CAGTG 3 cut(s) 146, 249, 578
CciI TCATGA 1 cut(s) 438
CfoI GCGC 2 cut(s) 288, 384
Cfr13I GGNCC 2 cut(s) 432, 529
Csp6I GTAC 2 cut(s) 128, 254
CviAII CATG 3 cut(s) 439, 487, 535
CviQI GTAC 2 cut(s) 128, 254
DpnI GATC 3 cut(s) 145, 457, 551
DpnII GATC 3 cut(s) 143, 455, 549
DraI TTTAAA 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 398
Eco24I GRGCYC 2 cut(s) 393, 577
Eco47I GGWCC 2 cut(s) 432, 529
Eco57I CTGAAG 3 cut(s) 5, 116, 355
Eco88I CYCGRG 1 cut(s) 515
EcoO109I RGGNCCY 1 cut(s) 432
EcoRII CCWGG 1 cut(s) 567
EcoT14I CCWWGG 1 cut(s) 398
EcoT38I GRGCYC 2 cut(s) 393, 577
ErhI CCWWGG 1 cut(s) 398
FaeI CATG 3 cut(s) 442, 490, 538
FaiI YATR 8 cut(s) 122, 177, 179, 346, 355, 440, 488, 536
FatI CATG 3 cut(s) 438, 486, 534
FbaI TGATCA 1 cut(s) 143
FokI GGATG 1 cut(s) 382
FriOI GRGCYC 2 cut(s) 393, 577
GlaI GCGC 2 cut(s) 287, 383
GsuI CTGGAG 2 cut(s) 19, 170
HaeII RGCGCY 1 cut(s) 289
HaeIII GGCC 2 cut(s) 6, 119
HhaI GCGC 2 cut(s) 288, 384
Hin1II CATG 3 cut(s) 442, 490, 538
Hin6I GCGC 2 cut(s) 286, 382
HinP1I GCGC 2 cut(s) 286, 382
HindIII AAGCTT 1 cut(s) 82
HinfI GANTC 1 cut(s) 555
Hpy188I TCNGA 3 cut(s) 24, 267, 554
Hpy188III TCNNGA 6 cut(s) 36, 325, 439, 459, 478, 591
HpyAV CCTTC 2 cut(s) 198, 445
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4V TGCA 2 cut(s) 57, 486
HpyF10VI GCNNNNNNNGC 1 cut(s) 388
Hsp92II CATG 3 cut(s) 442, 490, 538
HspAI GCGC 2 cut(s) 286, 382
Ksp22I TGATCA 1 cut(s) 143
Kzo9I GATC 3 cut(s) 143, 455, 549
LmnI GCTCC 1 cut(s) 572
LweI GCATC 2 cut(s) 6, 501
MaeIII GTNAC 2 cut(s) 135, 244
MalI GATC 3 cut(s) 145, 457, 551
MboI GATC 3 cut(s) 143, 455, 549
MboII GAAGA 3 cut(s) 254, 466, 579
MfeI CAATTG 1 cut(s) 377
MhlI GDGCHC 2 cut(s) 393, 577
MluCI AATT 2 cut(s) 230, 377
MnlI CCTC 7 cut(s) 43, 71, 276, 423, 455, 542, 569
MseI TTAA 6 cut(s) 28, 73, 182, 239, 314, 406
MslI CAYNNNNRTG 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 569
MunI CAATTG 1 cut(s) 377
MvaI CCWGG 1 cut(s) 569
MwoI GCNNNNNNNGC 1 cut(s) 388
NdeII GATC 3 cut(s) 143, 455, 549
NlaIII CATG 3 cut(s) 442, 490, 538
NlaIV GGNNCC 1 cut(s) 574
NmuCI GTSAC 1 cut(s) 244
NspI RCATGY 1 cut(s) 490
PagI TCATGA 1 cut(s) 438
PfeI GAWTC 1 cut(s) 555
PflMI CCANNNNNTGG 1 cut(s) 568
PpuMI RGGWCCY 1 cut(s) 432
Psp5II RGGWCCY 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 567
PspGI CCWGG 1 cut(s) 567
PspN4I GGNNCC 1 cut(s) 574
PspPI GGNCC 2 cut(s) 432, 529
PspPPI RGGWCCY 1 cut(s) 432
RsaI GTAC 2 cut(s) 129, 255
RsaNI GTAC 2 cut(s) 128, 254
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 6 cut(s) 28, 73, 182, 239, 314, 406
Sau3AI GATC 3 cut(s) 143, 455, 549
Sau96I GGNCC 2 cut(s) 432, 529
ScrFI CCNGG 1 cut(s) 569
SduI GDGCHC 2 cut(s) 393, 577
SetI ASST 7 cut(s) 86, 108, 164, 275, 361, 434, 528
SfaNI GCATC 2 cut(s) 6, 501
SinI GGWCC 2 cut(s) 432, 529
SmiMI CAYNNNNRTG 1 cut(s) 194
Sse9I AATT 2 cut(s) 230, 377
StyD4I CCNGG 1 cut(s) 567
StyI CCWWGG 1 cut(s) 398
TaaI ACNGT 1 cut(s) 244
TaqI TCGA 1 cut(s) 324
TaqII GACCGA 1 cut(s) 460
TasI AATT 2 cut(s) 230, 377
TfiI GAWTC 1 cut(s) 555
Tru1I TTAA 6 cut(s) 28, 73, 182, 239, 314, 406
Tru9I TTAA 6 cut(s) 28, 73, 182, 239, 314, 406
TscAI CASTG 3 cut(s) 153, 249, 585
TseFI GTSAC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 4 cut(s) 54, 342, 386, 427
TspRI CASTG 3 cut(s) 153, 249, 585
Van91I CCANNNNNTGG 1 cut(s) 568
VpaK11BI GGWCC 2 cut(s) 432, 529
XapI RAATTY 1 cut(s) 230
XceI RCATGY 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.